Changeset d12d621 for src/Jobs/VMGJob.hpp

Timestamp:

Nov 14, 2012, 10:02:51 AM (13 years ago)

Author:

Frederik Heber <heber@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

28c025

Parents:

2764e0

git-author:

Frederik Heber <heber@…> (07/25/12 18:26:01)

git-committer:

Frederik Heber <heber@…> (11/14/12 10:02:51)

Message:

VMGJob, MPQCJob, and MPQCData now contain information how to sample the density.

• begin, size, and level are stored in the classes. Additionally, InterfaceVMG stores the level as VMG::Interface::levelMax is private.
• We obtain begin and size via the domain size of the system, the level is set via an arbitrary constant that later has to be adapted to the required accuracy.
• MPQCJob is uses by mpqc to place the infor in resulting MPQCData, wherefrom VMGJobs are constructed that now also contain the vector of sample points.

File:

• src/Jobs/VMGJob.hpp (modified) (3 diffs)

src/Jobs/VMGJob.hpp

@@ -34 +34 @@
    *
    * @param _JobId id of the job
+   * @param _begin offset of the domain
+   * @param _size edge length of the cubic(!) domain
+   * @param _level level is \f$2^{\text{level}}\f$ grid points
    * @param _sampled_input vector of sampled points of the grid as right-hand side
    */
-  VMGJob(const JobId_t _JobId, const std::vector< double > &_sampled_input);
+  VMGJob(const JobId_t _JobId,
+      const double _begin[3],
+      const double _size,
+      const int _level,
+      const std::vector< double > &_sampled_input);
   virtual ~VMGJob();
 
@@ -45 +52 @@
 
 private:
+  double begin[3];
+  const double size;
+  const int level;
   //!> contents of the input file
   const std::vector< double > sampled_input;
@@ -59 +69 @@
   {
     ar & boost::serialization::base_object<FragmentJob>(*this);
+    int i;
+    for (i=0; i< 3; ++i)
+      ar & begin[i];
+    ar & const_cast< double &>(size);
+    ar & const_cast< int &>(level);
     ar & const_cast< std::vector< double > &>(sampled_input);
   }