Changeset 58ed4a for src/boundary.cpp
- Timestamp:
- Mar 18, 2010, 11:33:54 AM (15 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- b48ba6
- Parents:
- 7ee87f
- git-author:
- Frederik Heber <heber@…> (03/18/10 10:26:55)
- git-committer:
- Frederik Heber <heber@…> (03/18/10 11:33:54)
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/boundary.cpp
r7ee87f r58ed4a 342 342 for (Boundaries::iterator runner = BoundaryPoints[axis].begin(); runner != BoundaryPoints[axis].end(); runner++) 343 343 if (!TesselStruct->AddBoundaryPoint(runner->second.second, 0)) 344 eLog() << Verbose(2) << "Point " << *(runner->second.second) << " is already present!" << endl;344 DoeLog(2) && (eLog()<< Verbose(2) << "Point " << *(runner->second.second) << " is already present!" << endl); 345 345 346 346 Log() << Verbose(0) << "I found " << TesselStruct->PointsOnBoundaryCount << " points on the convex boundary." << endl; … … 362 362 // 3c. check whether all atoms lay inside the boundary, if not, add to boundary points, segment triangle into three with the new point 363 363 if (!TesselStruct->InsertStraddlingPoints(mol, LCList)) 364 eLog() << Verbose(1) << "Insertion of straddling points failed!" << endl;364 DoeLog(1) && (eLog()<< Verbose(1) << "Insertion of straddling points failed!" << endl); 365 365 366 366 Log() << Verbose(0) << "I created " << TesselStruct->TrianglesOnBoundary.size() << " intermediate triangles with " << TesselStruct->LinesOnBoundary.size() << " lines and " << TesselStruct->PointsOnBoundary.size() << " points." << endl; … … 401 401 // flip the line 402 402 if (TesselStruct->PickFarthestofTwoBaselines(line) == 0.) 403 eLog() << Verbose(1) << "Correction of concave baselines failed!" << endl;403 DoeLog(1) && (eLog()<< Verbose(1) << "Correction of concave baselines failed!" << endl); 404 404 else { 405 405 TesselStruct->FlipBaseline(line); … … 456 456 457 457 if ((TesselStruct == NULL) || (TesselStruct->PointsOnBoundary.empty())) { 458 eLog() << Verbose(1) << "TesselStruct is empty." << endl;458 DoeLog(1) && (eLog()<< Verbose(1) << "TesselStruct is empty." << endl); 459 459 return false; 460 460 } … … 521 521 // check whether there is something to work on 522 522 if (TesselStruct == NULL) { 523 eLog() << Verbose(1) << "TesselStruct is empty!" << endl;523 DoeLog(1) && (eLog()<< Verbose(1) << "TesselStruct is empty!" << endl); 524 524 return volume; 525 525 } … … 748 748 Log() << Verbose(1) << "Minimum volume of the convex envelope contained in a rectangular box is " << minimumvolume << " atomicmassunit/" << (IsAngstroem ? "angstrom" : "atomiclength") << "^3." << endl; 749 749 if (minimumvolume > cellvolume) { 750 eLog() << Verbose(1) << "the containing box already has a greater volume than the envisaged cell volume!" << endl;750 DoeLog(1) && (eLog()<< Verbose(1) << "the containing box already has a greater volume than the envisaged cell volume!" << endl); 751 751 Log() << Verbose(0) << "Setting Box dimensions to minimum possible, the greatest diameters." << endl; 752 752 for (int i = 0; i < NDIM; i++)
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