Ignore:
Timestamp:
Mar 4, 2010, 9:49:45 AM (16 years ago)
Author:
Saskia Metzler <metzler@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, Candidate_v1.7.0, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
ab4b55
Parents:
6bc51d (diff), 88d586 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Merge commit 'till/StructureRefactoring' into StateAndFormatParser

Conflicts:

molecuilder/src/Makefile.am
molecuilder/src/unittests/Makefile.am

SOURCE and HEADER are both one long line and thus could not be merged automatically.

File:
1 edited

Legend:

Unmodified
Added
Removed
  • src/unittests/listofbondsunittest.cpp

    r6bc51d r57f5cf  
    1616#include "listofbondsunittest.hpp"
    1717
     18#include "World.hpp"
    1819#include "atom.hpp"
    1920#include "bond.hpp"
     
    5051
    5152  // construct periodentafel
    52   tafel = new periodentafel;
     53  tafel = World::get()->getPeriode();
    5354  tafel->AddElement(hydrogen);
    5455
    5556  // construct molecule (tetraeder of hydrogens)
    56   TestMolecule = new molecule(tafel);
    57   Walker = new atom();
     57  TestMolecule = World::get()->createMolecule();
     58  Walker = World::get()->createAtom();
    5859  Walker->type = hydrogen;
    5960  Walker->node->Init(1., 0., 1. );
    6061  TestMolecule->AddAtom(Walker);
    61   Walker = new atom();
     62  Walker = World::get()->createAtom();
    6263  Walker->type = hydrogen;
    6364  Walker->node->Init(0., 1., 1. );
    6465  TestMolecule->AddAtom(Walker);
    65   Walker = new atom();
     66  Walker = World::get()->createAtom();
    6667  Walker->type = hydrogen;
    6768  Walker->node->Init(1., 1., 0. );
    6869  TestMolecule->AddAtom(Walker);
    69   Walker = new atom();
     70  Walker = World::get()->createAtom();
    7071  Walker->type = hydrogen;
    7172  Walker->node->Init(0., 0., 0. );
     
    8182{
    8283  // remove
    83   delete(TestMolecule);
    84   // note that all the atoms are cleaned by TestMolecule
    85   delete(tafel);
    86   // note that element is cleaned by periodentafel
     84  World::get()->destroyMolecule(TestMolecule);
     85  // note that all the atoms, molecules, the tafel and the elements
     86  // are all cleaned when the world is destroyed
    8787  World::destroy();
    8888  MemoryUsageObserver::purgeInstance();
     
    250250
    251251  // remove atom2
    252   delete(atom2);
     252  World::get()->destroyAtom(atom2);
    253253
    254254  // check bond if removed from other atom
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