Ignore:
Timestamp:
Apr 27, 2010, 2:25:42 PM (16 years ago)
Author:
Frederik Heber <heber@…>
Children:
90c4460
Parents:
1561e2 (diff), 2bc713 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Merge branch 'Analysis_PairCorrelation' into StructureRefactoring

Conflicts:

molecuilder/src/Makefile.am
molecuilder/src/World.cpp
molecuilder/src/World.hpp
molecuilder/src/boundary.cpp
molecuilder/src/builder.cpp
molecuilder/src/log.cpp
molecuilder/src/moleculelist.cpp
molecuilder/src/periodentafel.cpp
molecuilder/src/tesselation.cpp
molecuilder/src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp
molecuilder/src/unittests/Makefile.am
molecuilder/src/unittests/bondgraphunittest.cpp
molecuilder/src/unittests/gslvectorunittest.cpp
molecuilder/src/unittests/logunittest.cpp
molecuilder/src/unittests/tesselation_boundarytriangleunittest.hpp
molecuilder/src/vector.cpp
molecuilder/tests/Tesselations/defs.in

Conflicts have been many and too numerous to listen here, just the few general cases

  • new molecule() replaced by World::getInstance().createMolecule()
  • new atom() replaced by World::getInstance().createAtom() where appropriate.
  • Some DoLog()s added interfered with changes to the message produced by Log() << Verbose(.) << ...
  • DoLog() has been erroneously added to TestRunner.cpp as well, there cout is appropriate
  • ...

Additionally, there was a bug in atom::clone(), sort was set to atom::nr of the atom to clone not of the clone itself. This caused a failure of the fragmentation.

This merge has been fully checked from a clean build directory with subsequent configure,make all install and make check.
It configures, compiles and runs all test cases and the test suite without errors.

Signed-off-by: Frederik Heber <heber@…>

File:
1 edited

Legend:

Unmodified
Added
Removed
  • molecuilder/src/unittests/AnalysisCorrelationToPointUnitTest.cpp

    r1561e2 r075729  
    8383
    8484  TestList = World::getInstance().getMolecules();
     85  TestList->insert(TestMolecule);
    8586  TestMolecule->ActiveFlag = true;
    86   TestList->insert(TestMolecule);
    8787
    8888  // init point
     
    122122  // put pair correlation into bins and check with no range
    123123  binmap = BinData( pointmap, 0.5, 0., 0. );
    124   CPPUNIT_ASSERT_EQUAL( (size_t)2, binmap->size() );
    125   //OutputCorrelation ( binmap );
     124  OutputCorrelation ( (ofstream *)&cout, binmap );
     125  CPPUNIT_ASSERT_EQUAL( (size_t)3, binmap->size() );
    126126  tester = binmap->begin();
    127127  CPPUNIT_ASSERT_EQUAL( 1., tester->first );
     
    135135  // ... and check with [0., 2.] range
    136136  binmap = BinData( pointmap, 0.5, 0., 2. );
     137  OutputCorrelation ( (ofstream *)&cout, binmap );
    137138  CPPUNIT_ASSERT_EQUAL( (size_t)5, binmap->size() );
    138   //OutputCorrelation ( binmap );
    139139  tester = binmap->begin();
    140140  CPPUNIT_ASSERT_EQUAL( 0., tester->first );
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