Changes between Version 15 and Version 16 of StartersTutorial
- Timestamp:
- Apr 27, 2011, 1:59:46 PM (14 years ago)
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StartersTutorial
v15 v16 89 89 Adding atoms singly is now very tedious. Often one already has an xyz description of the molecule. Let's parse in another water molecule from the file [attachment:water.xyz]. 90 90 {{{ 91 ./src/molecuilder -i test.conf -o xyz - pwater.xyz91 ./src/molecuilder -i test.conf -o xyz -l water.xyz 92 92 }}} 93 93 94 94 If we would like to place it right-away somewhere else, we would use this call: 95 95 {{{ 96 ./src/molecuilder -i test.conf -o xyz - pwater.xyz --select-molecules-atoms 1 -t "15, 15, 15" --periodic 196 ./src/molecuilder -i test.conf -o xyz -l water.xyz --select-molecules-atoms 1 -t "15, 15, 15" --periodic 1 97 97 }}} 98 98 which would translate the newly parsed-in molecule, getting index 1, by (15,15,15), adhering to periodic boundary conditions.