Changes between Version 15 and Version 16 of StartersTutorial


Ignore:
Timestamp:
Apr 27, 2011, 1:59:46 PM (14 years ago)
Author:
FrederikHeber
Comment:

-p is now -l for loading a molecule

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  • StartersTutorial

    v15 v16  
    8989Adding atoms singly is now very tedious. Often one already has an xyz description of the molecule. Let's parse in another water molecule from the file [attachment:water.xyz].
    9090{{{
    91 ./src/molecuilder -i test.conf -o xyz -p water.xyz
     91./src/molecuilder -i test.conf -o xyz -l water.xyz
    9292}}}
    9393
    9494If we would like to place it right-away somewhere else, we would use this call:
    9595{{{
    96 ./src/molecuilder -i test.conf -o xyz -p water.xyz --select-molecules-atoms 1 -t "15, 15, 15" --periodic 1
     96./src/molecuilder -i test.conf -o xyz -l water.xyz --select-molecules-atoms 1 -t "15, 15, 15" --periodic 1
    9797}}}
    9898which would translate the newly parsed-in molecule, getting index 1, by (15,15,15), adhering to periodic boundary conditions.