== First steps into the code ==

MoleCuilder has become quite complex, so a few initial pointers might be helpful:

   * MoleCuilder has a built-in documentation system through [[http://www.doxygen.org/ doxygen]]. By default the documentation resides in molecuilder/doc/html/index.html (''note'': not build64/molecuilder/doc/html!). You have to create it first through by entering in your build directory
{{{
make doc
}}}
   * In general, look at [source:molecuilder/src/builder.cpp] as a start. All the stuff that MoleCuilder can do is launched from there and also the main() routine resides therein. If you have a suitable development environment such as Eclipse you can easily strg+click through the functions to discover what they do.