Index: tests/GuiChecks/Atoms/RemoveCuboid/testsuite-atoms-remove-cuboid.at
===================================================================
--- tests/GuiChecks/Atoms/RemoveCuboid/testsuite-atoms-remove-cuboid.at	(revision dd6c07d2c5d563c8e46c0a4b01a0de11563eb584)
+++ tests/GuiChecks/Atoms/RemoveCuboid/testsuite-atoms-remove-cuboid.at	(revision dd6c07d2c5d563c8e46c0a4b01a0de11563eb584)
@@ -0,0 +1,91 @@
+#
+#    MoleCuilder - creates and alters molecular systems
+#    Copyright (C) 2008-2012 University of Bonn
+#
+#    This program is free software: you can redistribute it and/or modify
+#    it under the terms of the GNU General Public License as published by
+#    the Free Software Foundation, either version 3 of the License, or
+#    (at your option) any later version.
+#
+#    This program is distributed in the hope that it will be useful,
+#    but WITHOUT ANY WARRANTY; without even the implied warranty of
+#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#    GNU General Public License for more details.
+#
+#    You should have received a copy of the GNU General Public License
+#    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
+### Removing atoms inside and outside of cuboid
+
+AT_SETUP([Atoms - Removing cuboid of atoms])
+AT_KEYWORDS([atoms remove-atom])
+
+file=test-withoutcuboid.xyz
+AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/pre/test.xyz $file], 0)
+AT_CHECK([chmod u+w $file], 0)
+AT_CHECK([../../molecuilder --dry-run -i $file --create-shape --shape-name "cube1" --shape-type "cube" --translation "9.78,2.64,2.64" --stretch "2,2,2" --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "cube1" --select-atoms-inside-volume -r --no-dry-run --store-session session-atoms-remove-cuboid.py --session-type python], 0, [stdout], [stderr])
+AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-cuboid.py >session-atoms-remove-cuboid_new.py], 0, [ignore], [ignore])
+AT_CHECK([../../molecuilderguitest session-atoms-remove-cuboid_new.py], 0, [stdout], [stderr])
+AT_CHECK([sort -n $file | grep -v -E "^[[[:digit:]]]+" | grep -v "Created by" >test-withoutcuboid.xyz-sorted], 0, [ignore], [ignore])
+AT_CHECK([file=test-withoutcuboid.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/post/test-withoutcuboid.xyz-sorted], 0, [ignore], [ignore])
+
+file=test-cuboid.xyz
+AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/pre/test.xyz $file], 0)
+AT_CHECK([chmod u+w $file], 0)
+AT_CHECK([../../molecuilder --dry-run -i $file --select-all-atoms --create-shape --shape-name "cube1" --shape-type "cube" --translation "9.78,2.64,2.64" --stretch "2,2,2" --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "cube1" --unselect-atoms-inside-volume -r --no-dry-run --store-session session-atoms-remove-cuboid.py --session-type python], 0, [stdout], [stderr])
+AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-cuboid.py >session-atoms-remove-cuboid_new.py], 0, [ignore], [ignore])
+AT_CHECK([../../molecuilderguitest session-atoms-remove-cuboid_new.py], 0, [stdout], [stderr])
+AT_CHECK([sort -n $file | grep -v -E "^[[[:digit:]]]+" | grep -v "Created by" >test-cuboid.xyz-sorted], 0, [ignore], [ignore])
+AT_CHECK([file=test-cuboid.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/post/test-cuboid.xyz-sorted], 0, [ignore], [ignore])
+AT_CHECK([cat test-cuboid.xyz-sorted test-withoutcuboid.xyz-sorted | sort -n >test.xyz-sorted], 0, [ignore], [ignore])
+AT_CHECK([file=test.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/post/test.xyz-sorted], 0, [ignore], [ignore])
+
+AT_CLEANUP
+
+
+AT_SETUP([Atoms - Removing cuboid of atoms with Undo])
+AT_KEYWORDS([atoms remove-atom undo])
+
+file=test.xyz
+AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/pre/test.xyz $file], 0)
+AT_CHECK([chmod u+w $file], 0)
+AT_CHECK([../../molecuilder --dry-run -i $file --select-all-atoms --create-shape --shape-name "cube1" --shape-type "cube" --translation "9.78,2.64,2.64" --stretch "2,2,2" --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "cube1" --unselect-atoms-inside-volume -r --undo --no-dry-run --store-session session-atoms-remove-cuboid.py --session-type python], 0, [stdout], [stderr])
+AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-cuboid.py >session-atoms-remove-cuboid_new.py], 0, [ignore], [ignore])
+AT_CHECK([../../molecuilderguitest session-atoms-remove-cuboid_new.py], 0, [stdout], [stderr])
+AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/pre/$file], 0, [ignore], [ignore])
+
+file=test.xyz
+AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/pre/test.xyz $file], 0)
+AT_CHECK([chmod u+w $file], 0)
+AT_CHECK([../../molecuilder --dry-run -i $file --create-shape --shape-name "cube1" --shape-type "cube" --translation "9.78,2.64,2.64" --stretch "2,2,2" --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "cube1" --select-atoms-inside-volume -r --undo --no-dry-run --store-session session-atoms-remove-cuboid.py --session-type python], 0, [stdout], [stderr])
+AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-cuboid.py >session-atoms-remove-cuboid_new.py], 0, [ignore], [ignore])
+AT_CHECK([../../molecuilderguitest session-atoms-remove-cuboid_new.py], 0, [stdout], [stderr])
+AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/pre/$file], 0, [ignore], [ignore])
+
+AT_CLEANUP
+
+
+AT_SETUP([Atoms - Removing cuboid of atoms with Redo])
+AT_KEYWORDS([atoms remove-atom redo])
+
+file=test-withoutcuboid.xyz
+AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/pre/test.xyz $file], 0)
+AT_CHECK([chmod u+w $file], 0)
+AT_CHECK([../../molecuilder --dry-run -i $file --create-shape --shape-name "cube1" --shape-type "cube" --translation "9.78,2.64,2.64" --stretch "2,2,2" --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "cube1" --select-atoms-inside-volume -r --undo --redo --no-dry-run --store-session session-atoms-remove-cuboid.py --session-type python], 0, [stdout], [stderr])
+AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-cuboid.py >session-atoms-remove-cuboid_new.py], 0, [ignore], [ignore])
+AT_CHECK([../../molecuilderguitest session-atoms-remove-cuboid_new.py], 0, [stdout], [stderr])
+AT_CHECK([sort -n $file | grep -v -E "^[[[:digit:]]]+" | grep -v "Created by" >test-withoutcuboid.xyz-sorted], 0, [ignore], [ignore])
+AT_CHECK([file=test-withoutcuboid.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/post/test-withoutcuboid.xyz-sorted], 0, [ignore], [ignore])
+
+file=test-cuboid.xyz
+AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/pre/test.xyz $file], 0)
+AT_CHECK([chmod u+w $file], 0)
+AT_CHECK([../../molecuilder --dry-run -i $file --select-all-atoms --create-shape --shape-name "cube1" --shape-type "cube" --translation "9.78,2.64,2.64" --stretch "2,2,2" --angle-x 0. --angle-y 0. --angle-z 0. --select-shape-by-name "cube1" --unselect-atoms-inside-volume -r --undo --redo --no-dry-run --store-session session-atoms-remove-cuboid.py --session-type python], 0, [stdout], [stderr])
+AT_CHECK([grep -v "Command.*DryRun" session-atoms-remove-cuboid.py >session-atoms-remove-cuboid_new.py], 0, [ignore], [ignore])
+AT_CHECK([../../molecuilderguitest session-atoms-remove-cuboid_new.py], 0, [stdout], [stderr])
+AT_CHECK([sort -n $file | grep -v -E "^[[[:digit:]]]+" | grep -v "Created by" >test-cuboid.xyz-sorted], 0, [ignore], [ignore])
+AT_CHECK([file=test-cuboid.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/post/test-cuboid.xyz-sorted], 0, [ignore], [ignore])
+AT_CHECK([cat test-cuboid.xyz-sorted test-withoutcuboid.xyz-sorted | sort -n >test.xyz-sorted], 0, [ignore], [ignore])
+AT_CHECK([file=test.xyz-sorted; diff $file ${abs_top_srcdir}/tests/regression/Atoms/RemoveCuboid/post/test.xyz-sorted], 0, [ignore], [ignore])
+
+AT_CLEANUP
