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  • src/Makefile.am

    r97ebf8 r6f646d  
    1 # PLEASE adhere to the alphabetical ordering in this Makefile!
    2 # Also indentation by a single tab
    3 
    41# this includes source files that need to be present at multiple points
    5 HELPERSOURCE =  \
    6   Helpers/Assert.cpp \
    7   Helpers/MemDebug.cpp
     2HELPERSOURCE =  Helpers/Assert.cpp \
     3                                Helpers/MemDebug.cpp
    84                       
    9 ATOMSOURCE = \
    10   atom.cpp \
    11   atom_atominfo.cpp \
    12   atom_bondedparticle.cpp \
    13   atom_bondedparticleinfo.cpp \
    14   atom_graphnode.cpp \
    15   atom_graphnodeinfo.cpp \
    16   atom_particleinfo.cpp \
    17   atom_trajectoryparticle.cpp \
    18   atom_trajectoryparticleinfo.cpp
    19 ATOMHEADER = \
    20   atom.hpp \
    21   atom_atominfo.hpp \
    22   atom_bondedparticle.hpp \
    23   atom_bondedparticleinfo.hpp \
    24   atom_graphnode.hpp \
    25   atom_graphnodeinfo.hpp \
    26   atom_particleinfo.hpp \
    27   atom_trajectoryparticle.hpp \
    28   atom_trajectoryparticleinfo.hpp
    29 
    30 LINALGSOURCE = \
    31   ${HELPERSOURCE} \
    32   gslmatrix.cpp \
    33   gslvector.cpp \
    34   linearsystemofequations.cpp \
    35   Space.cpp \
    36   vector.cpp
     5ATOMSOURCE = atom.cpp atom_atominfo.cpp atom_bondedparticle.cpp atom_bondedparticleinfo.cpp atom_graphnode.cpp atom_graphnodeinfo.cpp atom_particleinfo.cpp atom_trajectoryparticle.cpp atom_trajectoryparticleinfo.cpp
     6ATOMHEADER = atom.hpp atom_atominfo.hpp atom_bondedparticle.hpp atom_bondedparticleinfo.hpp atom_graphnode.hpp atom_graphnodeinfo.hpp atom_particleinfo.hpp atom_trajectoryparticle.hpp atom_trajectoryparticleinfo.hpp
     7
     8LINALGSOURCE = ${HELPERSOURCE} \
     9               gslmatrix.cpp \
     10                           gslvector.cpp \
     11                           linearsystemofequations.cpp \
     12                           Space.cpp \
     13                           vector.cpp
    3714                           
    3815LINALGHEADER = gslmatrix.hpp \
    39   gslvector.hpp \
    40   linearsystemofequations.hpp \
    41   Space.hpp \
    42   vector.hpp
     16                           gslvector.hpp \
     17                           linearsystemofequations.hpp \
     18                           Space.hpp \
     19                           vector.hpp
    4320                           
    44 ANALYSISSOURCE = \
    45   analysis_bonds.cpp \
    46   analysis_correlation.cpp
    47 ANALYSISHEADER = \
    48   analysis_bonds.hpp \
    49   analysis_correlation.hpp
     21
     22ANALYSISSOURCE = analysis_bonds.cpp analysis_correlation.cpp
     23ANALYSISHEADER = analysis_bonds.hpp analysis_correlation.hpp
    5024
    5125ACTIONSSOURCE = Actions/Action.cpp \
    52   ${ANALYSISACTIONSOURCE} \
    53   ${ATOMACTIONSOURCE} \
    54   ${CMDACTIONSOURCE} \
    55   ${FRAGMENTATIONACTIONSOURCE} \
    56   ${MOLECULEACTIONSOURCE} \
    57   ${PARSERACTIONSOURCE} \
    58   ${TESSELATIONACTIONSOURCE} \
    59   ${WORLDACTIONSOURCE} \
    60   Actions/ActionHistory.cpp \
    61   Actions/ActionRegistry.cpp \
    62   Actions/ActionSequence.cpp \
    63   Actions/ErrorAction.cpp \
    64   Actions/MakroAction.cpp \
    65   Actions/ManipulateAtomsProcess.cpp \
    66   Actions/MapOfActions.cpp \
    67   Actions/MethodAction.cpp \
    68   Actions/Process.cpp
    69 
     26                                Actions/ActionHistory.cpp \
     27                                Actions/ActionRegistry.cpp \
     28                                Actions/ActionSequence.cpp \
     29                                Actions/ErrorAction.cpp \
     30                                Actions/MakroAction.cpp \
     31                                Actions/ManipulateAtomsProcess.cpp \
     32                                Actions/MethodAction.cpp \
     33                Actions/Process.cpp \
     34                Actions/small_actions.cpp
     35               
     36                 
    7037ACTIONSHEADER = Actions/Action.hpp \
    71   ${ANALYSISACTIONHEADER} \
    72   ${ATOMACTIONHEADER} \
    73   ${CMDACTIONHEADER} \
    74   ${FRAGMENTATIONACTIONHEADER} \
    75   ${MOLECULEACTIONHEADER} \
    76   ${PARSERACTIONHEADER} \
    77   ${TESSELATIONACTIONHEADER} \
    78   ${WORLDACTIONHEADER} \
    79   Actions/ActionHistory.hpp \
    80   Actions/ActionRegistry.hpp \
    81   Actions/ActionSequence.hpp \
    82   Actions/Calculation.hpp \
    83   Actions/Calculation_impl.hpp \
    84   Actions/ErrorAction.hpp \
    85   Actions/MakroAction.hpp \
    86   Actions/ManipulateAtomsProcess.hpp \
    87   Actions/MapOfActions.hpp \
    88   Actions/MethodAction.hpp \
    89   Actions/Process.hpp
    90  
    91 ANALYSISACTIONSOURCE = \
    92   Actions/AnalysisAction/MolecularVolumeAction.cpp \
    93   Actions/AnalysisAction/PairCorrelationAction.cpp \
    94   Actions/AnalysisAction/PairCorrelationToPointAction.cpp \
    95   Actions/AnalysisAction/PairCorrelationToSurfaceAction.cpp \
    96   Actions/AnalysisAction/PrincipalAxisSystemAction.cpp
    97 ANALYSISACTIONHEADER = \
    98   Actions/AnalysisAction/MolecularVolumeAction.hpp \
    99   Actions/AnalysisAction/PairCorrelationAction.hpp \
    100   Actions/AnalysisAction/PairCorrelationToPointAction.hpp \
    101   Actions/AnalysisAction/PairCorrelationToSurfaceAction.hpp \
    102   Actions/AnalysisAction/PrincipalAxisSystemAction.hpp
    103 
    104 ATOMACTIONSOURCE = \
    105   Actions/AtomAction/AddAction.cpp \
    106   Actions/AtomAction/ChangeElementAction.cpp \
    107   Actions/AtomAction/RemoveAction.cpp
    108 ATOMACTIONHEADER = \
    109   Actions/AtomAction/AddAction.hpp \
    110   Actions/AtomAction/ChangeElementAction.hpp \
    111   Actions/AtomAction/RemoveAction.cpp
    112 
    113 CMDACTIONSOURCE = \
    114   Actions/CmdAction/BondLengthTableAction.cpp \
    115   Actions/CmdAction/ElementDbAction.cpp \
    116   Actions/CmdAction/FastParsingAction.cpp \
    117   Actions/CmdAction/HelpAction.cpp \
    118   Actions/CmdAction/VerboseAction.cpp \
    119   Actions/CmdAction/VersionAction.cpp
    120 CMDACTIONHEADER = \
    121   Actions/CmdAction/BondLengthTableAction.hpp \
    122   Actions/CmdAction/ElementDbAction.hpp \
    123   Actions/CmdAction/FastParsingAction.hpp \
    124   Actions/CmdAction/HelpAction.hpp \
    125   Actions/CmdAction/VerboseAction.hpp \
    126   Actions/CmdAction/VersionAction.hpp
    127 
    128 FRAGMENTATIONACTIONSOURCE = \
    129   Actions/FragmentationAction/DepthFirstSearchAction.cpp \
    130   Actions/FragmentationAction/FragmentationAction.cpp \
    131   Actions/FragmentationAction/SubgraphDissectionAction.cpp               
    132 FRAGMENTATIONACTIONHEADER = \
    133   Actions/FragmentationAction/DepthFirstSearchAction.hpp \
    134   Actions/FragmentationAction/FragmentationAction.hpp \
    135   Actions/FragmentationAction/SubgraphDissectionAction.hpp
    136 
    137 MOLECULEACTIONSOURCE = \
    138   Actions/MoleculeAction/BondFileAction.cpp \
    139   Actions/MoleculeAction/ChangeNameAction.cpp \
    140   Actions/MoleculeAction/FillWithMoleculeAction.cpp \
    141   Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp \
    142   Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp \
    143   Actions/MoleculeAction/SaveAdjacencyAction.cpp \
    144   Actions/MoleculeAction/SaveBondsAction.cpp \
    145   Actions/MoleculeAction/SaveTemperatureAction.cpp \
    146   Actions/MoleculeAction/SuspendInWaterAction.cpp \
    147   Actions/MoleculeAction/TranslateAction.cpp \
    148   Actions/MoleculeAction/VerletIntegrationAction.cpp
    149 MOLECULEACTIONHEADER = \
    150   Actions/MoleculeAction/BondFileAction.hpp \
    151   Actions/MoleculeAction/ChangeNameAction.hpp \
    152   Actions/MoleculeAction/FillWithMoleculeAction.hpp \
    153   Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp \
    154   Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp \
    155   Actions/MoleculeAction/SaveAdjacencyAction.hpp \
    156   Actions/MoleculeAction/SaveBondsAction.hpp \
    157   Actions/MoleculeAction/SaveTemperatureAction.hpp \
    158   Actions/MoleculeAction/SuspendInWaterAction.hpp \
    159   Actions/MoleculeAction/TranslateAction.hpp \
    160   Actions/MoleculeAction/VerletIntegrationAction.hpp
    161                  
    162 PARSERACTIONSOURCE = \
    163   Actions/ParserAction/LoadXyzAction.cpp \
    164   Actions/ParserAction/SaveXyzAction.cpp       
    165 PARSERACTIONHEADER = \
    166   Actions/ParserAction/LoadXyzAction.hpp \
    167   Actions/ParserAction/SaveXyzAction.hpp
    168 
    169 TESSELATIONACTIONSOURCE = \
    170   Actions/TesselationAction/ConvexEnvelopeAction.cpp \
    171   Actions/TesselationAction/NonConvexEnvelopeAction.cpp               
    172 TESSELATIONACTIONHEADER = \
    173   Actions/TesselationAction/ConvexEnvelopeAction.hpp \
    174   Actions/TesselationAction/NonConvexEnvelopeAction.hpp
    175 
    176 WORLDACTIONSOURCE = \
    177   Actions/WorldAction/AddEmptyBoundaryAction.cpp \
    178   Actions/WorldAction/BoundInBoxAction.cpp \
    179   Actions/WorldAction/CenterInBoxAction.cpp \
    180   Actions/WorldAction/CenterOnEdgeAction.cpp \
    181   Actions/WorldAction/ChangeBoxAction.cpp \
    182   Actions/WorldAction/RemoveSphereOfAtomsAction.cpp \
    183   Actions/WorldAction/RepeatBoxAction.cpp \
    184   Actions/WorldAction/ScaleBoxAction.cpp \
    185   Actions/WorldAction/SetDefaultNameAction.cpp \
    186   Actions/WorldAction/SetGaussianBasisAction.cpp               
    187 WORLDACTIONHEADER = \
    188   Actions/WorldAction/AddEmptyBoundaryAction.hpp \
    189   Actions/WorldAction/BoundInBoxAction.hpp \
    190   Actions/WorldAction/CenterInBoxAction.hpp \
    191   Actions/WorldAction/CenterOnEdgeAction.hpp \
    192   Actions/WorldAction/ChangeBoxAction.hpp \
    193   Actions/WorldAction/RemoveSphereOfAtomsAction.hpp \
    194   Actions/WorldAction/RepeatBoxAction.hpp \
    195   Actions/WorldAction/ScaleBoxAction.hpp \
    196   Actions/WorldAction/SetDefaultNameAction.hpp \
    197   Actions/WorldAction/SetGaussianBasisAction.hpp
    198 
    199 
    200 
    201 PARSERSOURCE = \
    202   Parser/ChangeTracker.cpp \
    203   Parser/FormatParser.cpp \
    204   Parser/TremoloParser.cpp \
    205   Parser/XyzParser.cpp
    206 PARSERHEADER = \
    207   Parser/ChangeTracker.hpp \
    208   Parser/FormatParser.hpp \
    209   Parser/TremoloParser.hpp \
    210   Parser/XyzParser.hpp
    211 
    212 PATTERNSOURCE = \
    213   Patterns/Observer.cpp
    214 PATTERNHEADER = \
    215   Patterns/Cacheable.hpp \
    216   Patterns/Observer.hpp \
    217   Patterns/Singleton.hpp
    218 
    219 # Below is all for the User Interface
    220 
    221 VIEWSOURCE = \
    222   Views/View.cpp \
    223   Views/StringView.cpp \
    224   Views/MethodStringView.cpp \
    225   Views/StreamStringView.cpp
    226 VIEWHEADER = \
    227   Views/View.hpp \
    228   Views/StringView.hpp \
    229   Views/MethodStringView.hpp \
    230   Views/StreamStringView.hpp
    231 
    232 MENUSOURCE = \
    233   Menu/Menu.cpp \
    234   Menu/TextMenu.cpp \
    235   Menu/MenuItem.cpp \
    236   Menu/SubMenuItem.cpp \
    237   Menu/ActionMenuItem.cpp \
    238   Menu/SeperatorItem.cpp \
    239   Menu/DisplayMenuItem.cpp
    240  
    241 MENUHEADER = \
    242   Menu/Menu.hpp \
    243   Menu/TextMenu.hpp \
    244   Menu/MenuItem.hpp \
    245   Menu/SubMenuItem.hpp \
    246   Menu/ActionMenuItem.hpp \
    247   Menu/SeperatorItem.hpp \
    248   Menu/DisplayMenuItem.hpp
    249 
    250 UISOURCE = \
    251   ${ACTIONSSOURCE} \
    252   ${COMMANDLINEUISOURCE} \
    253   ${MENUSOURCE} \
    254   ${TEXTUISOURCE} \
    255   ${VIEWSOURCE} \
    256   UIElements/Dialog.cpp \
    257   UIElements/MainWindow.cpp \
    258   UIElements/UIFactory.cpp
    259  
    260 UIHEADER = \
    261   ${ACTIONSHEADER} \
    262   ${COMMANDLINEUIHEADER} \
    263   ${MENUHEADER} \
    264   ${TEXTUIHEADER} \
    265   ${VIEWHEADER} \
    266   UIElements/Dialog.hpp \
    267   UIElements/MainWindow.hpp \
    268   UIElements/UIFactory.hpp
    269 
    270 TEXTUISOURCE = \
    271   UIElements/TextDialog.cpp \
    272   UIElements/TextStatusIndicator.cpp \
    273   UIElements/TextUIFactory.cpp \
    274   UIElements/TextWindow.cpp
    275 TEXTUIHEADER = \
    276   UIElements/TextDialog.hpp \
    277   UIElements/TextStatusIndicator.hpp \
    278   UIElements/TextUIFactory.hpp \
    279   UIElements/TextWindow.hpp
    280 
    281 COMMANDLINEUISOURCE = \
    282   UIElements/CommandLineDialog.cpp \
    283   UIElements/CommandLineStatusIndicator.cpp \
    284   UIElements/CommandLineUIFactory.cpp \
    285   UIElements/CommandLineWindow.cpp
    286 COMMANDLINEUIHEADER = \
    287   UIElements/CommandLineDialog.hpp \
    288   UIElements/CommandLineStatusIndicator.hpp \
    289   UIElements/CommandLineUIFactory.hpp \
    290   UIElements/CommandLineWindow.hpp
     38                                Actions/ActionHistory.hpp \
     39                                Actions/ActionRegistry.hpp \
     40                                Actions/ActionSequence.hpp \
     41                            Actions/Calculation.hpp \
     42                            Actions/Calculation_impl.hpp \
     43                            Actions/ErrorAction.hpp \
     44                            Actions/MakroAction.hpp \
     45                            Actions/ManipulateAtomsProcess.hpp \
     46                            Actions/MethodAction.hpp \
     47                            Actions/Process.hpp \
     48                            Actions/small_actions.hpp
     49                           
     50                           
     51
     52PATTERNSOURCE = Patterns/Observer.cpp
     53PATTERNHEADER = Patterns/Cacheable.hpp \
     54                                Patterns/Observer.hpp \
     55                Patterns/Singleton.hpp
     56
     57VIEWSOURCE = Views/View.cpp Views/StringView.cpp Views/MethodStringView.cpp Views/StreamStringView.cpp
     58VIEWHEADER = Views/View.hpp Views/StringView.hpp Views/MethodStringView.hpp Views/StreamStringView.hpp
     59
     60MENUSOURCE = Menu/Menu.cpp Menu/TextMenu.cpp Menu/MenuItem.cpp Menu/SubMenuItem.cpp Menu/ActionMenuItem.cpp Menu/SeperatorItem.cpp Menu/DisplayMenuItem.cpp
     61MENUHEADER = Menu/Menu.hpp Menu/TextMenu.hpp Menu/MenuItem.hpp Menu/SubMenuItem.hpp Menu/ActionMenuItem.hpp Menu/SeperatorItem.hpp Menu/DisplayMenuItem.hpp
     62
     63UISOURCE = ${ACTIONSSOURCE} ${VIEWSOURCE} ${MENUSOURCE} UIElements/UIFactory.cpp UIElements/TextUIFactory.cpp UIElements/MainWindow.cpp UIElements/TextWindow.cpp UIElements/TextStatusIndicator.cpp UIElements/Dialog.cpp UIElements/TextDialog.cpp
     64UIHEADER = ${ACTIONSHEADER} ${VIEWHEADER} ${MENUHEADER} UIElements/UIFactory.hpp UIElements/TextUIFactory.hpp UIElements/MainWindow.hpp UIElements/TextWindow.hpp UIElements/TextStatusIndicator.hpp UIElements/Dialog.hpp UIElements/TextDialog.hpp
    29165
    29266# all these files are only used for legacy reasons while the transition is in progress
    … …  
    29771
    29872DESCRIPTORSOURCE = Descriptors/AtomDescriptor.cpp \
    299   Descriptors/AtomIdDescriptor.cpp \
    300   Descriptors/AtomTypeDescriptor.cpp \
    301   Descriptors/MoleculeDescriptor.cpp \
    302   Descriptors/MoleculeIdDescriptor.cpp
     73                                   Descriptors/AtomIdDescriptor.cpp \
     74                                   Descriptors/AtomTypeDescriptor.cpp \
     75                                   Descriptors/MoleculeDescriptor.cpp \
     76                                   Descriptors/MoleculeIdDescriptor.cpp
    30377                                   
    30478                                   
    30579DESCRIPTORHEADER = Descriptors/AtomDescriptor.hpp \
    306   Descriptors/AtomIdDescriptor.hpp \
    307   Descriptors/AtomTypeDescriptor.hpp \
    308   Descriptors/MoleculeDescriptor.hpp \
    309   Descriptors/MoleculeIdDescriptor.hpp
     80                                   Descriptors/AtomIdDescriptor.hpp \
     81                                   Descriptors/AtomTypeDescriptor.hpp \
     82                                   Descriptors/MoleculeDescriptor.hpp \
     83                                   Descriptors/MoleculeIdDescriptor.hpp
    31084                                   
     85
     86
    31187EXCEPTIONSOURCE = Exceptions/CustomException.cpp \
    312   Exceptions/LinearDependenceException.cpp \
    313   Exceptions/MathException.cpp \
    314   Exceptions/ZeroVectorException.cpp
     88                                  Exceptions/LinearDependenceException.cpp \
     89                                  Exceptions/MathException.cpp \
     90                                  Exceptions/ZeroVectorException.cpp
    31591                                 
    31692EXCEPTIONHEADER = Exceptions/CustomException.hpp \
    317   Exceptions/LinearDependenceException.hpp \
    318   Exceptions/MathException.hpp \
    319   Exceptions/ZeroVectorException.hpp
    320 
    321 SOURCE = \
    322   ${ANALYSISSOURCE} \
    323   ${ATOMSOURCE} \
    324   ${PATTERNSOURCE} \
    325   ${PARSERSOURCE} \
    326   ${UISOURCE} \
    327   ${DESCRIPTORSOURCE} \
    328   ${HELPERSOURCE} \
    329   ${LEGACYSOURCE} \
    330   ${EXCEPTIONSOURCE} \
    331   bond.cpp \
    332   bondgraph.cpp \
    333   boundary.cpp \
    334   CommandLineParser.cpp \
    335   config.cpp \
    336   element.cpp \
    337   ellipsoid.cpp \
    338   errorlogger.cpp \
    339   graph.cpp \
    340   helpers.cpp \
    341   info.cpp \
    342   leastsquaremin.cpp \
    343   Line.cpp \
    344   linkedcell.cpp \
    345   lists.cpp \
    346   log.cpp \
    347   logger.cpp \
    348   memoryusageobserver.cpp \
    349   moleculelist.cpp \
    350   molecule.cpp \
    351   molecule_dynamics.cpp \
    352   molecule_fragmentation.cpp \
    353   molecule_geometry.cpp \
    354   molecule_graph.cpp \
    355   molecule_pointcloud.cpp \
    356   parser.cpp \
    357   periodentafel.cpp \
    358   Plane.cpp \
    359   tesselation.cpp \
    360   tesselationhelpers.cpp \
    361   triangleintersectionlist.cpp \
    362   verbose.cpp \
    363   vector_ops.cpp \
    364   World.cpp
     93                                  Exceptions/LinearDependenceException.hpp \
     94                                  Exceptions/MathException.hpp \
     95                                  Exceptions/ZeroVectorException.hpp
     96
     97SOURCE = ${ANALYSISSOURCE} \
     98                 ${ATOMSOURCE} \
     99                 ${PATTERNSOURCE} \
     100                 ${UISOURCE} \
     101                 ${DESCRIPTORSOURCE} \
     102                 ${HELPERSOURCE} \
     103                 ${LEGACYSOURCE} \
     104                 ${EXCEPTIONSOURCE} \
     105                 bond.cpp \
     106                 bondgraph.cpp \
     107                 boundary.cpp \
     108                 config.cpp \
     109                 element.cpp \
     110                 ellipsoid.cpp \
     111                 errorlogger.cpp \
     112                 graph.cpp \
     113                 helpers.cpp \
     114                 info.cpp \
     115                 leastsquaremin.cpp \
     116                 Line.cpp \
     117                 linkedcell.cpp \
     118                 lists.cpp \
     119                 log.cpp \
     120                 logger.cpp \
     121                 memoryusageobserver.cpp \
     122                 moleculelist.cpp \
     123                 molecule.cpp \
     124                 molecule_dynamics.cpp \
     125                 molecule_fragmentation.cpp \
     126                 molecule_geometry.cpp \
     127                 molecule_graph.cpp \
     128                 molecule_pointcloud.cpp \
     129                 parser.cpp \
     130                 periodentafel.cpp \
     131                 Plane.cpp \
     132                 tesselation.cpp \
     133                 tesselationhelpers.cpp \
     134                 triangleintersectionlist.cpp \
     135                 verbose.cpp \
     136                 vector_ops.cpp \
     137                 World.cpp
    365138
    366139HEADER = \
    367   ${ANALYSISHEADER} \
    368   ${ATOMHEADER} \
    369   ${PARSERHEADER} \
    370   ${PATTERNHEADER} \
    371   ${UIHEADER} \
    372   ${DESCRIPTORHEADER} \
    373   ${EXCEPTIONHEADER} \
    374   ${LEGACYHEADER} \
    375   bond.hpp \
    376   bondgraph.hpp \
    377   boundary.hpp \
    378   CommandLineParser.hpp \
    379   config.hpp \
    380   defs.hpp \
    381   element.hpp \
    382   ellipsoid.hpp \
    383   errorlogger.hpp \
    384   graph.hpp \
    385   helpers.hpp \
    386   info.hpp \
    387   leastsquaremin.hpp \
    388   Line.hpp \
    389   linkedcell.hpp \
    390   lists.hpp \
    391   log.hpp \
    392   logger.hpp \
    393   memoryallocator.hpp \
    394   memoryusageobserver.hpp \
    395   molecule.hpp \
    396   molecule_template.hpp \
    397   parser.hpp \
    398   periodentafel.hpp \
    399   Plane.hpp \
    400   stackclass.hpp \
    401   tesselation.hpp \
    402   tesselationhelpers.hpp \
    403   triangleintersectionlist.hpp \
    404   verbose.hpp \
    405   vector_ops.hpp \
    406   World.hpp
     140          ${ANALYSISHEADER} \
     141          ${ATOMHEADER} \
     142          ${PATTERNHEADER} \
     143          ${UIHEADER} \
     144          ${DESCRIPTORHEADER} \
     145          ${EXCEPTIONHEADER} \
     146          ${LEGACYHEADER} \
     147          bond.hpp \
     148          bondgraph.hpp \
     149          boundary.hpp \
     150          config.hpp \
     151          defs.hpp \
     152          element.hpp \
     153          ellipsoid.hpp \
     154          errorlogger.hpp \
     155          graph.hpp \
     156          helpers.hpp \
     157          info.hpp \
     158          leastsquaremin.hpp \
     159          Line.hpp \
     160          linkedcell.hpp \
     161          lists.hpp \
     162          log.hpp \
     163          logger.hpp \
     164          memoryallocator.hpp \
     165          memoryusageobserver.hpp \
     166          molecule.hpp \
     167          molecule_template.hpp \
     168          parser.hpp \
     169          periodentafel.hpp \
     170          Plane.hpp \
     171          stackclass.hpp \
     172          tesselation.hpp \
     173          tesselationhelpers.hpp \
     174          triangleintersectionlist.hpp \
     175          verbose.hpp \
     176          vector_ops.hpp \
     177          World.hpp
    407178
    408179BOOST_LIB = $(BOOST_LDFLAGS) $(BOOST_MPL_LIB)
    … …  
    417188molecuilder_LDFLAGS = $(BOOST_LDFLAGS)
    418189molecuilder_SOURCES = builder.cpp
    419 molecuilder_LDADD = libmolecuilder.a libgslwrapper.a $(BOOST_LIB) ${BOOST_THREAD_LIB} ${BOOST_PROGRAM_OPTIONS_LIB}
     190molecuilder_LDADD = libmolecuilder.a libgslwrapper.a $(BOOST_LIB) ${BOOST_THREAD_LIB}
    420191joiner_SOURCES = joiner.cpp datacreator.cpp parser.cpp datacreator.hpp helpers.hpp parser.hpp periodentafel.hpp
    421192joiner_LDADD = libmolecuilder.a $(BOOST_LIB) ${BOOST_THREAD_LIB}
    422193analyzer_SOURCES = analyzer.cpp datacreator.cpp parser.cpp helpers.hpp periodentafel.hpp parser.hpp datacreator.hpp
    423194analyzer_LDADD = libmolecuilder.a $(BOOST_LIB) ${BOOST_THREAD_LIB}
     195
     196#EXTRA_DIST = ${molecuilder_DATA}
    424197
    425198FORCE:
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