- Timestamp:
- Jul 2, 2012, 7:54:12 AM (13 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 6ee809
- Parents:
- 9d14c3
- git-author:
- Frederik Heber <heber@…> (03/04/12 20:05:05)
- git-committer:
- Frederik Heber <heber@…> (07/02/12 07:54:12)
- Location:
- src/Fragmentation/Automation
- Files:
-
- 7 edited
- 27 moved
Legend:
- Unmodified
- Added
- Removed
-
src/Fragmentation/Automation/Controller/CommandRegistry.hpp
r9d14c3 r50d095 14 14 #endif 15 15 16 #include "Controller/Commands/Operation.hpp"17 16 #include "CodePatterns/Registry.hpp" 17 18 #include "Operations/Operation.hpp" 18 19 19 20 class CommandRegistry : public Registry<Operation> -
src/Fragmentation/Automation/Controller/FragmentController.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "FragmentController.hpp" 26 25 27 #include "Connection.hpp" // Must come before boost/serialization headers. 26 28 #include "CodePatterns/Info.hpp" 27 29 #include "CodePatterns/Log.hpp" 28 30 29 #include "Controller/FragmentController.hpp" 30 #include "Controller/Commands/CheckResultsOperation.hpp" 31 #include "Controller/Commands/GetNextJobIdOperation.hpp" 32 #include "Controller/Commands/ReceiveResultsOperation.hpp" 33 #include "Controller/Commands/SendJobsOperation.hpp" 34 #include "Controller/Commands/ShutdownOperation.hpp" 31 #include "Operations/Controllers/CheckResultsOperation.hpp" 32 #include "Operations/Controllers/GetNextJobIdOperation.hpp" 33 #include "Operations/Controllers/ReceiveResultsOperation.hpp" 34 #include "Operations/Controllers/SendJobsOperation.hpp" 35 #include "Operations/Controllers/ShutdownOperation.hpp" 35 36 36 37 /** Constructor of class FragmentController. -
src/Fragmentation/Automation/FragmentScheduler.cpp
r9d14c3 r50d095 36 36 #include "CodePatterns/Observer/Notification.hpp" 37 37 #include "ControllerChoices.hpp" 38 #include " Controller/Commands/EnrollInPoolOperation.hpp"38 #include "Operations/Workers/EnrollInPoolOperation.hpp" 39 39 #include "Jobs/MPQCCommandJob.hpp" 40 40 #include "Jobs/SystemCommandJob.hpp" -
src/Fragmentation/Automation/FragmentScheduler.hpp
r9d14c3 r50d095 21 21 #include "Connection.hpp" 22 22 #include "ControllerChoices.hpp" 23 #include " Controller/Commands/SendJobToWorkerOperation.hpp"24 #include " Controller/Commands/ShutdownWorkerOperation.hpp""23 #include "Operations/Servers/SendJobToWorkerOperation.hpp" 24 #include "Operations/Servers/ShutdownWorkerOperation.hpp" 25 25 #include "ControllerChoices.hpp" 26 26 #include "FragmentQueue.hpp" -
src/Fragmentation/Automation/Makefile.am
r9d14c3 r50d095 42 42 $(BOOST_IOSTREAMS_LDFLAGS) $(BOOST_IOSTREAMS_LIBS) 43 43 44 FRAGMENTATION COMMANDSSOURCE = \45 Controller/Commands/AsyncOperation.cpp \46 Controller/Commands/CheckResultsOperation.cpp \47 Controller/Commands/EnrollInPoolOperation.cpp \48 Controller/Commands/GetNextJobIdOperation.cpp \49 Controller/Commands/ObtainJobOperation.cpp \50 Controller/Commands/ReceiveResultsOperation.cpp \51 Controller/Commands/RemoveFromPoolOperation.cpp \52 Controller/Commands/SendJobsOperation.cpp \53 Controller/Commands/SendJobToWorkerOperation.cpp \54 Controller/Commands/ShutdownOperation.cpp \55 Controller/Commands/ShutdownWorkerOperation.cpp \56 Controller/Commands/SubmitResultOperation.cpp \57 Controller/Commands/SyncOperation.cpp44 FRAGMENTATIONOPERATIONSSOURCE = \ 45 Operations/AsyncOperation.cpp \ 46 Operations/SyncOperation.cpp \ 47 Operations/Controllers/CheckResultsOperation.cpp \ 48 Operations/Controllers/GetNextJobIdOperation.cpp \ 49 Operations/Controllers/ReceiveResultsOperation.cpp \ 50 Operations/Controllers/SendJobsOperation.cpp \ 51 Operations/Controllers/ShutdownOperation.cpp \ 52 Operations/Servers/SendJobToWorkerOperation.cpp \ 53 Operations/Servers/ShutdownWorkerOperation.cpp \ 54 Operations/Workers/EnrollInPoolOperation.cpp \ 55 Operations/Workers/ObtainJobOperation.cpp \ 56 Operations/Workers/RemoveFromPoolOperation.cpp \ 57 Operations/Workers/SubmitResultOperation.cpp 58 58 59 FRAGMENTATION COMMANDSHEADER = \59 FRAGMENTATIONOPERATIONSHEADER = \ 60 60 ControllerChoices.hpp \ 61 Controller/Commands/AsyncOperation.hpp \62 Controller/Commands/CheckResultsOperation.hpp \63 Controller/Commands/EnrollInPoolOperation.hpp \64 Controller/Commands/GetNextJobIdOperation.hpp \65 Controller/Commands/ObtainJobOperation.hpp \66 Controller/Commands/Operation.hpp \67 Controller/Commands/ReceiveResultsOperation.hpp \68 Controller/Commands/RemoveFromPoolOperation.hpp \69 Controller/Commands/SendJobsOperation.hpp \70 Controller/Commands/SendJobToWorkerOperation.hpp \71 Controller/Commands/ShutdownOperation.hpp \72 Controller/Commands/ShutdownWorkerOperation.hpp \73 Controller/Commands/SubmitResultOperation.hpp \74 Controller/Commands/SyncOperation.hpp \61 Operations/AsyncOperation.hpp \ 62 Operations/Operation.hpp \ 63 Operations/SyncOperation.hpp \ 64 Operations/Controllers/CheckResultsOperation.hpp \ 65 Operations/Controllers/GetNextJobIdOperation.hpp \ 66 Operations/Controllers/ReceiveResultsOperation.hpp \ 67 Operations/Controllers/SendJobsOperation.hpp \ 68 Operations/Controllers/ShutdownOperation.hpp \ 69 Operations/Servers/SendJobToWorkerOperation.hpp \ 70 Operations/Servers/ShutdownWorkerOperation.hpp \ 71 Operations/Workers/EnrollInPoolOperation.hpp \ 72 Operations/Workers/ObtainJobOperation.hpp \ 73 Operations/Workers/RemoveFromPoolOperation.hpp \ 74 Operations/Workers/SubmitResultOperation.hpp \ 75 75 WorkerChoices.hpp 76 76 77 noinst_LTLIBRARIES += libMolecuilderFragmentation Commands.la78 libMolecuilderFragmentation Commands_la_includedir = $(includedir)/MoleCuilder/Fragmentation/Automation/79 nobase_libMolecuilderFragmentation Commands_la_include_HEADERS = $(FRAGMENTATIONCOMMANDSHEADER)80 libMolecuilderFragmentation Commands_la_CXXFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS} $(BOOST_ASIO_DEBUG)81 libMolecuilderFragmentation Commands_la_SOURCES = $(FRAGMENTATIONCOMMANDSSOURCE)77 noinst_LTLIBRARIES += libMolecuilderFragmentationOperations.la 78 libMolecuilderFragmentationOperations_la_includedir = $(includedir)/MoleCuilder/Fragmentation/Automation/ 79 nobase_libMolecuilderFragmentationOperations_la_include_HEADERS = $(FRAGMENTATIONOPERATIONSHEADER) 80 libMolecuilderFragmentationOperations_la_CXXFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS} $(BOOST_ASIO_DEBUG) 81 libMolecuilderFragmentationOperations_la_SOURCES = $(FRAGMENTATIONOPERATIONSSOURCE) 82 82 83 83 FRAGMENTATIONAUTOMATIONHELPERSOURCE = \ … … 137 137 Controller_LDADD = \ 138 138 libMolecuilderFragmentationAutomationHelper.la \ 139 libMolecuilderFragmentation Commands.la \139 libMolecuilderFragmentationOperations.la \ 140 140 libMolecuilderFragmentJobs.la \ 141 141 $(BOOST_ASIO_LIBS) \ … … 150 150 PoolWorker_LDADD = \ 151 151 libMolecuilderFragmentationAutomationHelper.la \ 152 libMolecuilderFragmentation Commands.la \152 libMolecuilderFragmentationOperations.la \ 153 153 libMolecuilderFragmentJobs.la \ 154 154 $(BOOST_ASIO_LIBS) \ … … 163 163 Server_LDADD = \ 164 164 libMolecuilderFragmentationAutomationHelper.la \ 165 libMolecuilderFragmentation Commands.la \165 libMolecuilderFragmentationOperations.la \ 166 166 libMolecuilderFragmentJobs.la \ 167 167 $(BOOST_ASIO_LIBS) \ -
src/Fragmentation/Automation/Operations/AsyncOperation.cpp
r9d14c3 r50d095 24 24 #include "CodePatterns/MemDebug.hpp" 25 25 26 #include "AsyncOperation.hpp" 27 26 28 #include <boost/bind.hpp> 27 29 #include <vector> … … 29 31 #include "CodePatterns/Info.hpp" 30 32 #include "CodePatterns/Log.hpp" 31 32 #include "Controller/Commands/AsyncOperation.hpp"33 33 34 34 /** Callback function when an operation has been completed. -
src/Fragmentation/Automation/Operations/Controllers/CheckResultsOperation.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "CheckResultsOperation.hpp" 26 25 27 #include <boost/bind.hpp> 26 28 #include <iostream> … … 30 32 #include "CodePatterns/Log.hpp" 31 33 #include "ControllerChoices.hpp" 32 33 #include "Controller/Commands/CheckResultsOperation.hpp"34 34 35 35 /** Handle connect operation to send number of done jobs. -
src/Fragmentation/Automation/Operations/Controllers/CheckResultsOperation.hpp
r9d14c3 r50d095 19 19 #include "Connection.hpp" 20 20 21 #include " Controller/Commands/AsyncOperation.hpp"21 #include "Operations/AsyncOperation.hpp" 22 22 23 23 /** This Operations requests number of present jobs and present results (done -
src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "GetNextJobIdOperation.hpp" 26 25 27 #include <boost/bind.hpp> 26 28 #include <iostream> … … 31 33 #include "ControllerChoices.hpp" 32 34 #include "types.hpp" 33 34 #include "Controller/Commands/GetNextJobIdOperation.hpp"35 35 36 36 /** Handle connect operation to send number of done jobs. -
src/Fragmentation/Automation/Operations/Controllers/GetNextJobIdOperation.hpp
r9d14c3 r50d095 18 18 #include "Connection.hpp" 19 19 20 #include "Controller/Commands/AsyncOperation.hpp"21 20 #include "JobId.hpp" 21 #include "Operations/AsyncOperation.hpp" 22 22 #include "types.hpp" 23 23 -
src/Fragmentation/Automation/Operations/Controllers/ReceiveResultsOperation.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "ReceiveResultsOperation.hpp" 26 25 27 #include <boost/bind.hpp> 26 28 #include <iostream> … … 32 34 #include "ControllerChoices.hpp" 33 35 #include "Results/FragmentResult.hpp" 34 35 #include "Controller/Commands/ReceiveResultsOperation.hpp"36 36 37 37 /** Handle connect operation to send results. -
src/Fragmentation/Automation/Operations/Controllers/ReceiveResultsOperation.hpp
r9d14c3 r50d095 19 19 20 20 #include "Connection.hpp" 21 #include "Operations/AsyncOperation.hpp" 21 22 #include "Results/FragmentResult.hpp" 22 23 23 #include "Controller/Commands/AsyncOperation.hpp"24 24 25 25 class ReceiveResultsOperation : public AsyncOperation { -
src/Fragmentation/Automation/Operations/Controllers/SendJobsOperation.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "SendJobsOperation.hpp" 26 25 27 #include <boost/bind.hpp> 26 28 #include <boost/foreach.hpp> … … 33 35 #include "ControllerChoices.hpp" 34 36 #include "Jobs/FragmentJob.hpp" 35 36 #include "Controller/Commands/SendJobsOperation.hpp"37 37 38 38 /** Handle connect operation to receive jobs from controller -
src/Fragmentation/Automation/Operations/Controllers/SendJobsOperation.hpp
r9d14c3 r50d095 21 21 #include "Jobs/FragmentJob.hpp" 22 22 23 #include " Controller/Commands/AsyncOperation.hpp"23 #include "Operations/AsyncOperation.hpp" 24 24 25 25 class SendJobsOperation : public AsyncOperation { -
src/Fragmentation/Automation/Operations/Controllers/ShutdownOperation.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "ShutdownOperation.hpp" 26 25 27 #include <boost/bind.hpp> 26 28 #include <iostream> … … 28 30 #include "CodePatterns/Info.hpp" 29 31 #include "ControllerChoices.hpp" 30 31 #include "Controller/Commands/ShutdownOperation.hpp"32 32 33 33 /** Virtual internal function to give shutdown choice. -
src/Fragmentation/Automation/Operations/Controllers/ShutdownOperation.hpp
r9d14c3 r50d095 19 19 20 20 #include "Connection.hpp" 21 22 #include "Controller/Commands/SyncOperation.hpp" 21 #include "Operations/SyncOperation.hpp" 23 22 24 23 /** Synchronous operation that gives shutdown command. -
src/Fragmentation/Automation/Operations/Servers/SendJobToWorkerOperation.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "SendJobToWorkerOperation.hpp" 26 25 27 #include <boost/bind.hpp> 26 28 #include <iostream> … … 28 30 #include "CodePatterns/Info.hpp" 29 31 #include "CodePatterns/Log.hpp" 30 31 #include "Controller/Commands/SendJobToWorkerOperation.hpp"32 32 33 33 /** Handle connect operation to shutdown scheduler. -
src/Fragmentation/Automation/Operations/Servers/SendJobToWorkerOperation.hpp
r9d14c3 r50d095 20 20 #include "Connection.hpp" 21 21 22 #include "Controller/Commands/AsyncOperation.hpp"23 22 #include "Jobs/FragmentJob.hpp" 24 23 #include "Jobs/SystemCommandJob.hpp" 24 #include "Operations/AsyncOperation.hpp" 25 25 #include "WorkerAddress.hpp" 26 26 -
src/Fragmentation/Automation/Operations/Servers/ShutdownWorkerOperation.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "ShutdownWorkerOperation.hpp" 26 25 27 #include <boost/bind.hpp> 26 28 #include <iostream> … … 30 32 #include "Jobs/SystemCommandJob.hpp" 31 33 #include "JobId.hpp" 32 33 #include "Controller/Commands/ShutdownWorkerOperation.hpp"34 34 35 35 FragmentJob::ptr ShutdownWorkerOperation::NoJob(new SystemCommandJob(std::string(""), std::string(""), JobId::NoJob)); -
src/Fragmentation/Automation/Operations/Servers/ShutdownWorkerOperation.hpp
r9d14c3 r50d095 20 20 #include "Connection.hpp" 21 21 22 #include "Controller/Commands/SyncOperation.hpp"23 22 #include "Jobs/FragmentJob.hpp" 23 #include "Operations/SyncOperation.hpp" 24 24 25 25 /** Synchronous operation that gives shutdown command. -
src/Fragmentation/Automation/Operations/SyncOperation.cpp
r9d14c3 r50d095 24 24 #include "CodePatterns/MemDebug.hpp" 25 25 26 #include "SyncOperation.hpp" 27 26 28 #include <boost/bind.hpp> 27 29 #include <vector> … … 29 31 #include "CodePatterns/Info.hpp" 30 32 #include "CodePatterns/Log.hpp" 31 32 #include "Controller/Commands/SyncOperation.hpp"33 33 34 34 /** Internal function to connect connection_. -
src/Fragmentation/Automation/Operations/Workers/EnrollInPoolOperation.hpp
r9d14c3 r50d095 21 21 #include "Connection.hpp" 22 22 23 #include "Controller/Commands/AsyncOperation.hpp"24 23 #include "Jobs/FragmentJob.hpp" 24 #include "Operations/AsyncOperation.hpp" 25 25 #include "Results/FragmentResult.hpp" 26 26 #include "WorkerAddress.hpp" -
src/Fragmentation/Automation/Operations/Workers/ObtainJobOperation.hpp
r9d14c3 r50d095 21 21 #include "Connection.hpp" 22 22 23 #include "Controller/Commands/AsyncOperation.hpp"24 23 #include "Jobs/FragmentJob.hpp" 24 #include "Operations/AsyncOperation.hpp" 25 25 #include "Results/FragmentResult.hpp" 26 26 -
src/Fragmentation/Automation/Operations/Workers/RemoveFromPoolOperation.cpp
r9d14c3 r50d095 23 23 #include "CodePatterns/MemDebug.hpp" 24 24 25 #include "RemoveFromPoolOperation.hpp" 26 25 27 #include <boost/bind.hpp> 26 28 #include <iostream> … … 30 32 #include "WorkerChoices.hpp" 31 33 32 #include "Controller/Commands/RemoveFromPoolOperation.hpp"33 34 34 35 /** Internal operation after connect to give address and send remove signal -
src/Fragmentation/Automation/Operations/Workers/RemoveFromPoolOperation.hpp
r9d14c3 r50d095 20 20 #include "Connection.hpp" 21 21 22 #include " Controller/Commands/SyncOperation.hpp"22 #include "Operations/SyncOperation.hpp" 23 23 #include "WorkerAddress.hpp" 24 24 -
src/Fragmentation/Automation/Operations/Workers/SubmitResultOperation.hpp
r9d14c3 r50d095 21 21 #include "Connection.hpp" 22 22 23 #include "Controller/Commands/AsyncOperation.hpp"24 23 #include "Jobs/FragmentJob.hpp" 24 #include "Operations/AsyncOperation.hpp" 25 25 #include "Results/FragmentResult.hpp" 26 26 #include "WorkerAddress.hpp" -
src/Fragmentation/Automation/Pool/PoolWorker.hpp
r9d14c3 r50d095 22 22 #include "Connection.hpp" 23 23 #include "Jobs/FragmentJob.hpp" 24 #include " Controller/Commands/EnrollInPoolOperation.hpp"25 #include " Controller/Commands/RemoveFromPoolOperation.hpp"26 #include " Controller/Commands/SubmitResultOperation.hpp"24 #include "Operations/Workers/EnrollInPoolOperation.hpp" 25 #include "Operations/Workers/RemoveFromPoolOperation.hpp" 26 #include "Operations/Workers/SubmitResultOperation.hpp" 27 27 #include "Listener.hpp" 28 28 #include "WorkerAddress.hpp" -
src/Fragmentation/Automation/controller.cpp
r9d14c3 r50d095 40 40 #include "CodePatterns/Log.hpp" 41 41 #include "Controller/FragmentController.hpp" 42 #include " Controller/Commands/CheckResultsOperation.hpp"43 #include " Controller/Commands/GetNextJobIdOperation.hpp"44 #include " Controller/Commands/ReceiveResultsOperation.hpp"45 #include " Controller/Commands/SendJobsOperation.hpp"46 #include " Controller/Commands/ShutdownOperation.hpp"42 #include "Operations/Controllers/CheckResultsOperation.hpp" 43 #include "Operations/Controllers/GetNextJobIdOperation.hpp" 44 #include "Operations/Controllers/ReceiveResultsOperation.hpp" 45 #include "Operations/Controllers/SendJobsOperation.hpp" 46 #include "Operations/Controllers/ShutdownOperation.hpp" 47 47 #include "Jobs/MPQCCommandJob.hpp" 48 48 #include "Jobs/MPQCCommandJob_MPQCData.hpp"
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