Changeset 455573 for src/Graph

Timestamp:

Apr 18, 2011, 12:45:06 PM (14 years ago)

Author:

Frederik Heber <heber@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

4217e7

Parents:

ca2cfa

git-author:

Frederik Heber <heber@…> (03/02/11 16:25:13)

git-committer:

Frederik Heber <heber@…> (04/18/11 12:45:06)

Message:

Large Commit: SUBDIRS in src/Makefile.am replaced by include.

• This should let make decide on the dependencies automatically.
• We had to change each Makefile.am due to different relative location now.
• FIX: convenience libs were not created due to lib_LT... instead of noinst_LT... (thanks, Ralf!)
• FIX: convenience libs cannot pass on dependencies on real libs, these (seemingly: libLinearAlgebra) have to be re-specified.
• FIX: RANDOMSOURCE/HEADER were still present to include in libMolecuilder although RandomNumbers have been outsourced for some time already.
• this should make it a lot easier for unit tests to get away with the massive dependencies because we may now include single libs and can construct stubs in replacement.

File:

• src/Graph/Makefile.am (modified) (2 diffs)

src/Graph/Makefile.am

@@ -2 +2 @@
 # Also indentation by a single tab
 
-INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/LinearAlgebra/src
-
-AM_LDFLAGS = ${CodePatterns_LIBS} -ldl
-AM_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
-
 GRAPHSOURCE = \
-        BreadthFirstSearchAdd.cpp \
-        BuildInducedSubgraph.cpp \
-        CheckAgainstAdjacencyFile.cpp \
-        ConnectedSubgraph.cpp \
-        CyclicStructureAnalysis.cpp \
-        DepthFirstSearchAnalysis.cpp
+        Graph/BondGraph.cpp \
+        Graph/BreadthFirstSearchAdd.cpp \
+        Graph/BuildInducedSubgraph.cpp \
+        Graph/CheckAgainstAdjacencyFile.cpp \
+        Graph/ConnectedSubgraph.cpp \
+        Graph/CyclicStructureAnalysis.cpp \
+        Graph/DepthFirstSearchAnalysis.cpp
                                   
 GRAPHHEADER = \
-        BreadthFirstSearchAdd.hpp \
-        BuildInducedSubgraph.hpp \
-        CheckAgainstAdjacencyFile.hpp \
-        ConnectedSubgraph.hpp \
-        CyclicStructureAnalysis.hpp \
-        DepthFirstSearchAnalysis.hpp
+        Graph/BondGraph.hpp \
+        Graph/BreadthFirstSearchAdd.hpp \
+        Graph/BuildInducedSubgraph.hpp \
+        Graph/CheckAgainstAdjacencyFile.hpp \
+        Graph/ConnectedSubgraph.hpp \
+        Graph/CyclicStructureAnalysis.hpp \
+        Graph/DepthFirstSearchAnalysis.hpp
 
 
-lib_LTLIBRARIES = libMolecuilderGraph.la
+noinst_LTLIBRARIES += libMolecuilderGraph.la
 libMolecuilderGraph_la_includedir = $(includedir)/MoleCuilder/Graph/
+
 nobase_libMolecuilderGraph_la_include_HEADERS = ${GRAPHHEADER}
 
@@ -63 +61 @@
 #pkgconfigdir = $(libdir)/pkgconfig
 #pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
-
-unity.cpp:
-        echo "" >  unity.cpp; \
-        list='$(GRAPHSOURCE)'; for file in $$list; do \
-          echo "#include \"$(srcdir)/$$file\"" >> unity.cpp; \
-        done;
-        
-MOSTLYCLEANFILES = unity.cpp