Changes in / [0b2dd2:009e37b]
- Files:
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- 12 edited
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- Added
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src/builder.cpp
r0b2dd2 r009e37b 2107 2107 if (volume != -1) 2108 2108 ExitFlag = 255; 2109 eLog() << Verbose(0) << "Not enough or invalidarguments given for suspension: -u <density>" << endl;2109 eLog() << Verbose(0) << "Not enough arguments given for suspension: -u <density>" << endl; 2110 2110 performCriticalExit(); 2111 2111 } else { -
src/molecule_graph.cpp
r0b2dd2 r009e37b 1117 1117 bool status = true; 1118 1118 if (ReferenceStack->IsEmpty()) { 1119 Log() << Verbose(1) << "ReferenceStack is empty!" << endl; 1119 eLog() << Verbose(0) << "ReferenceStack is empty!" << endl; 1120 performCriticalExit(); 1120 1121 return false; 1121 1122 } -
src/moleculelist.cpp
r0b2dd2 r009e37b 402 402 input.open(line.c_str()); 403 403 if (input == NULL) { 404 Log() << Verbose(1) << endl << "Unable to open " << line << ", is the directory correct?" << endl; 404 eLog() << Verbose(0) << endl << "Unable to open " << line << ", is the directory correct?" << endl; 405 performCriticalExit(); 405 406 return false; 406 407 } -
tests/regression/Tesselation/1/post/NonConvexEnvelope.dat
r0b2dd2 r009e37b 1 1 TITLE = "3D CONVEX SHELL" 2 2 VARIABLES = "X" "Y" "Z" "U" 3 ZONE T=" test", N=8, E=12, DATAPACKING=POINT, ZONETYPE=FETRIANGLE3 ZONE T="0- H08_ H09_ H11", N=8, E=12, DATAPACKING=POINT, ZONETYPE=FETRIANGLE 4 4 9.78209 2.64589 2.64589 0 5 5 9.78209 2.64589 4.42589 0 … … 13 13 1 3 4 14 14 1 4 7 15 3 4 5 16 1 7 8 17 1 2 8 15 18 4 6 7 16 3 4519 2 3 5 17 20 4 5 6 18 2 3 5 21 6 7 8 22 1 2 3 19 23 2 5 8 20 24 5 6 8 21 6 7 822 1 2 723 2 7 824 1 2 3 -
tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d
r0b2dd2 r009e37b 34 34 1.37419 -0.89433 -0.89 0.12489 1.24767 -0.89 -1.12431 -0.89433 -0.89 1. 0. 0. 35 35 1 36 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 -0.89 0.12489 1.24767 0.89 1. 0. 0. 37 1 38 1.37419 -0.89433 -0.89 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0. 39 1 40 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 -1.12431 -0.89433 0.89 1. 0. 0. 41 1 36 42 0.12489 1.24767 -0.89 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 1. 0. 0. 37 43 1 38 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 -0.890.12489 1.24767 0.89 1. 0. 0.44 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 0.89 1. 0. 0. 39 45 1 40 46 0.12489 1.24767 -0.89 0.12489 1.24767 0.89 -2.01426 0.364321 -4.44089e-16 1. 0. 0. 41 47 1 42 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 0.89 1. 0. 0. 48 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0. 49 1 50 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 1. 0. 0. 43 51 1 44 52 1.37419 -0.89433 0.89 0.12489 1.24767 0.89 -1.12431 -0.89433 0.89 1. 0. 0. 45 53 1 46 54 0.12489 1.24767 0.89 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 0.89 1. 0. 0. 47 148 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0.49 150 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 -1.12431 -0.89433 -0.89 1. 0. 0.51 152 1.37419 -0.89433 0.89 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0.53 154 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 1. 0. 0.55 55 9 56 56 # terminating special property … … 59 59 25.0 0.6 -1.0 -1.0 -1.0 0.2 0 0 0 0 60 60 2 61 1.67084 -0.47478 -8.88178e-165 1 0 061 -1.00456 0.23922 0.593333 5 1 0 0 62 62 9 63 63 terminating special property -
tests/regression/Tesselation/2/post/ConvexEnvelope.dat
r0b2dd2 r009e37b 1 1 TITLE = "3D CONVEX SHELL" 2 2 VARIABLES = "X" "Y" "Z" "U" 3 ZONE T=" test", N=8, E=12, DATAPACKING=POINT, ZONETYPE=FETRIANGLE3 ZONE T="0- H08_ H09_ H11", N=8, E=12, DATAPACKING=POINT, ZONETYPE=FETRIANGLE 4 4 9.78209 2.64589 2.64589 0 5 5 9.78209 2.64589 4.42589 0 … … 13 13 1 3 4 14 14 1 4 7 15 3 4 5 16 1 7 8 17 1 2 8 15 18 4 6 7 16 3 4519 2 3 5 17 20 4 5 6 18 2 3 5 21 6 7 8 22 1 2 3 19 23 2 5 8 20 24 5 6 8 21 6 7 822 1 2 723 2 7 824 1 2 3 -
tests/regression/Tesselation/2/post/ConvexEnvelope.r3d
r0b2dd2 r009e37b 34 34 1.37419 -0.89433 -0.89 0.12489 1.24767 -0.89 -1.12431 -0.89433 -0.89 1. 0. 0. 35 35 1 36 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 -0.89 0.12489 1.24767 0.89 1. 0. 0. 37 1 38 1.37419 -0.89433 -0.89 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0. 39 1 40 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 -1.12431 -0.89433 0.89 1. 0. 0. 41 1 36 42 0.12489 1.24767 -0.89 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 1. 0. 0. 37 43 1 38 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 -0.890.12489 1.24767 0.89 1. 0. 0.44 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 0.89 1. 0. 0. 39 45 1 40 46 0.12489 1.24767 -0.89 0.12489 1.24767 0.89 -2.01426 0.364321 -4.44089e-16 1. 0. 0. 41 47 1 42 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 0.89 1. 0. 0. 48 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0. 49 1 50 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 1. 0. 0. 43 51 1 44 52 1.37419 -0.89433 0.89 0.12489 1.24767 0.89 -1.12431 -0.89433 0.89 1. 0. 0. 45 53 1 46 54 0.12489 1.24767 0.89 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 0.89 1. 0. 0. 47 148 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0.49 150 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 -1.12431 -0.89433 -0.89 1. 0. 0.51 152 1.37419 -0.89433 0.89 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0.53 154 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 1. 0. 0.55 55 9 56 56 # terminating special property … … 59 59 25.0 0.6 -1.0 -1.0 -1.0 0.2 0 0 0 0 60 60 2 61 1.67084 -0.47478 -8.88178e-165 1 0 061 -1.00456 0.23922 0.593333 5 1 0 0 62 62 9 63 63 terminating special property -
tests/regression/Tesselation/2/post/NonConvexEnvelope.dat
r0b2dd2 r009e37b 1 1 TITLE = "3D CONVEX SHELL" 2 2 VARIABLES = "X" "Y" "Z" "U" 3 ZONE T=" test", N=8, E=12, DATAPACKING=POINT, ZONETYPE=FETRIANGLE3 ZONE T="0- H08_ H09_ H11", N=8, E=12, DATAPACKING=POINT, ZONETYPE=FETRIANGLE 4 4 9.78209 2.64589 2.64589 0 5 5 9.78209 2.64589 4.42589 0 … … 13 13 1 3 4 14 14 1 4 7 15 3 4 5 16 1 7 8 17 1 2 8 15 18 4 6 7 16 3 4519 2 3 5 17 20 4 5 6 18 2 3 5 21 6 7 8 22 1 2 3 19 23 2 5 8 20 24 5 6 8 21 6 7 822 1 2 723 2 7 824 1 2 3 -
tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d
r0b2dd2 r009e37b 34 34 1.37419 -0.89433 -0.89 0.12489 1.24767 -0.89 -1.12431 -0.89433 -0.89 1. 0. 0. 35 35 1 36 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 -0.89 0.12489 1.24767 0.89 1. 0. 0. 37 1 38 1.37419 -0.89433 -0.89 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0. 39 1 40 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 -1.12431 -0.89433 0.89 1. 0. 0. 41 1 36 42 0.12489 1.24767 -0.89 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 1. 0. 0. 37 43 1 38 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 -0.890.12489 1.24767 0.89 1. 0. 0.44 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 0.89 1. 0. 0. 39 45 1 40 46 0.12489 1.24767 -0.89 0.12489 1.24767 0.89 -2.01426 0.364321 -4.44089e-16 1. 0. 0. 41 47 1 42 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 0.12489 1.24767 0.89 1. 0. 0. 48 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0. 49 1 50 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 1. 0. 0. 43 51 1 44 52 1.37419 -0.89433 0.89 0.12489 1.24767 0.89 -1.12431 -0.89433 0.89 1. 0. 0. 45 53 1 46 54 0.12489 1.24767 0.89 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 0.89 1. 0. 0. 47 148 -2.01426 0.364321 -4.44089e-16 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0.49 150 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 -1.12431 -0.89433 -0.89 1. 0. 0.51 152 1.37419 -0.89433 0.89 -1.12431 -0.89433 -0.89 -1.12431 -0.89433 0.89 1. 0. 0.53 154 1.37419 -0.89433 -0.89 1.37419 -0.89433 0.89 2.26414 0.364321 -4.44089e-16 1. 0. 0.55 55 9 56 56 # terminating special property … … 59 59 25.0 0.6 -1.0 -1.0 -1.0 0.2 0 0 0 0 60 60 2 61 1.67084 -0.47478 -8.88178e-165 1 0 061 -1.00456 0.23922 0.593333 5 1 0 0 62 62 9 63 63 terminating special property -
tests/regression/Tesselation/3/post/NonConvexEnvelope.dat
r0b2dd2 r009e37b 1 1 TITLE = "3D CONVEX SHELL" 2 2 VARIABLES = "X" "Y" "Z" "U" 3 ZONE T=" test", N=44, E=86, DATAPACKING=POINT, ZONETYPE=FETRIANGLE3 ZONE T="0- H49_ H50_ H51", N=44, E=86, DATAPACKING=POINT, ZONETYPE=FETRIANGLE 4 4 6.9077 1.1106 0.1214 1 5 5 0.3612 -3.628 1.323 1 … … 28 28 2.8131 1.4776 2.5103 0 29 29 3.9137 2.2936 1.3739 0 30 2.159 2.5738 1.2698 530 2.159 2.5738 1.2698 2 31 31 3.6606 -0.4593 2.1396 2 32 32 3.2007 -1.4419 0.7311 4 33 -3.3002 2.3589 0.0094 833 -3.3002 2.3589 0.0094 5 34 34 -4.377 1.6962 -1.2433 3 35 35 5.2593 1.4547 -1.7445 0 … … 40 40 5.2727 1.6068 1.2828 2 41 41 -6.2394 4.6427 0.0632 0 42 -4.4738 4.5591 -0.1458 342 -4.4738 4.5591 -0.1458 1 43 43 -5.5506 3.8964 -1.3985 0 44 44 -6.7081 0.9923 0.6224 2 … … 49 49 1 32 44 50 50 1 32 35 51 32 33 44 51 52 1 34 35 52 53 23 32 35 54 23 32 33 55 26 33 44 56 1 34 37 57 29 34 35 53 58 17 23 35 59 18 23 33 60 26 27 33 61 26 37 44 62 1 37 44 63 28 34 37 64 28 29 34 65 4 29 35 66 17 18 23 54 67 8 17 35 68 18 27 33 69 25 26 27 70 25 26 37 71 25 28 37 72 15 28 29 73 2 4 29 74 3 4 35 75 9 17 18 55 76 8 10 17 77 3 8 35 78 16 18 27 79 14 25 27 80 14 25 28 81 14 15 28 82 2 15 29 83 2 3 4 84 9 10 17 85 9 18 31 56 86 3 8 10 57 3 8 35 58 3 4 35 59 4 29 35 60 29 34 35 61 2 3 4 62 2 4 29 63 2 15 29 64 15 28 29 65 28 29 34 87 16 18 30 88 16 27 30 89 14 27 30 90 7 14 15 66 91 2 7 15 67 7 14 15 68 14 15 28 69 14 25 28 70 25 28 37 71 28 34 37 72 1 34 37 73 1 37 44 74 25 26 37 75 25 26 27 76 26 27 33 77 26 33 44 78 26 37 44 79 14 25 27 80 14 27 30 92 2 3 5 93 9 10 12 94 9 19 31 95 18 30 31 96 3 10 12 81 97 6 14 30 98 6 7 14 99 2 5 7 100 3 5 12 101 9 12 13 102 9 13 19 103 13 19 31 104 30 31 39 82 105 6 24 30 106 6 7 24 107 5 7 11 108 5 12 22 109 12 13 21 110 13 21 31 111 27 30 39 112 31 39 40 83 113 24 30 36 84 30 36 3985 27 30 3986 6 7 2487 6 7 1488 114 7 11 24 89 11 20 24 115 5 11 22 116 12 21 22 117 21 31 43 118 31 40 43 119 40 42 43 120 41 42 43 121 21 41 43 122 20 21 41 90 123 20 24 41 91 124 24 36 41 92 125 36 41 42 93 11 20 2294 5 11 2295 5 7 1196 2 5 797 27 30 3998 16 27 3099 16 18 30100 16 18 27101 18 27 33102 18 23 33103 36 38 39104 126 36 38 42 105 18 30 31106 30 31 39107 31 39 40108 9 18 31109 9 17 18110 17 18 23111 9 19 31112 9 13 19113 13 19 31114 13 21 31115 21 31 43116 31 40 43117 9 12 13118 9 10 12119 9 10 17120 12 13 21121 12 21 22122 5 12 22123 3 5 12124 2 3 5125 3 10 12126 20 21 22127 20 21 41128 21 41 43129 41 42 43130 23 32 33131 32 33 44132 40 42 43133 127 38 40 42 134 128 38 39 40 129 36 38 39 130 30 36 39 131 27 30 39 132 11 20 24 133 11 20 22 134 20 21 22 -
tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d
r0b2dd2 r009e37b 160 160 7.33693 1.04442 0.0886712 5.68853 1.38852 -1.77723 5.55043 -0.952879 -0.490929 1. 0. 0. 161 161 1 162 5.68853 1.38852 -1.77723 5.11553 2.70122 -0.710229 7.56833 1.97852 -0.00632877 1. 0. 0. 163 1 162 164 7.33693 1.04442 0.0886712 6.17523 -0.969279 1.17127 5.55043 -0.952879 -0.490929 1. 0. 0. 163 165 1 164 166 3.62023 1.25552 -2.86813 5.68853 1.38852 -1.77723 5.55043 -0.952879 -0.490929 1. 0. 0. 165 167 1 168 3.62023 1.25552 -2.86813 5.68853 1.38852 -1.77723 5.11553 2.70122 -0.710229 1. 0. 0. 169 1 170 4.34293 2.22742 1.34117 5.11553 2.70122 -0.710229 7.56833 1.97852 -0.00632877 1. 0. 0. 171 1 172 7.33693 1.04442 0.0886712 6.17523 -0.969279 1.17127 5.70193 1.54062 1.25007 1. 0. 0. 173 1 174 3.62993 -1.50808 0.698371 6.17523 -0.969279 1.17127 5.55043 -0.952879 -0.490929 1. 0. 0. 175 1 166 176 1.76663 -0.360379 -2.99373 3.62023 1.25552 -2.86813 5.55043 -0.952879 -0.490929 1. 0. 0. 167 177 1 178 1.03283 1.01972 -2.14533 3.62023 1.25552 -2.86813 5.11553 2.70122 -0.710229 1. 0. 0. 179 1 180 4.34293 2.22742 1.34117 2.58823 2.50762 1.23707 5.11553 2.70122 -0.710229 1. 0. 0. 181 1 182 4.34293 2.22742 1.34117 5.70193 1.54062 1.25007 7.56833 1.97852 -0.00632877 1. 0. 0. 183 1 184 7.33693 1.04442 0.0886712 5.70193 1.54062 1.25007 7.56833 1.97852 -0.00632877 1. 0. 0. 185 1 186 4.08983 -0.525479 2.10687 6.17523 -0.969279 1.17127 5.70193 1.54062 1.25007 1. 0. 0. 187 1 188 4.08983 -0.525479 2.10687 3.62993 -1.50808 0.698371 6.17523 -0.969279 1.17127 1. 0. 0. 189 1 190 1.92773 -2.57738 0.498071 3.62993 -1.50808 0.698371 5.55043 -0.952879 -0.490929 1. 0. 0. 191 1 192 1.76663 -0.360379 -2.99373 1.03283 1.01972 -2.14533 3.62023 1.25552 -2.86813 1. 0. 0. 193 1 168 194 2.19193 -1.51408 -0.867629 1.76663 -0.360379 -2.99373 5.55043 -0.952879 -0.490929 1. 0. 0. 169 195 1 196 1.03283 1.01972 -2.14533 2.58823 2.50762 1.23707 5.11553 2.70122 -0.710229 1. 0. 0. 197 1 198 3.24233 1.41142 2.47757 4.34293 2.22742 1.34117 2.58823 2.50762 1.23707 1. 0. 0. 199 1 200 3.24233 1.41142 2.47757 4.34293 2.22742 1.34117 5.70193 1.54062 1.25007 1. 0. 0. 201 1 202 3.24233 1.41142 2.47757 4.08983 -0.525479 2.10687 5.70193 1.54062 1.25007 1. 0. 0. 203 1 204 2.06173 -1.39848 1.79787 4.08983 -0.525479 2.10687 3.62993 -1.50808 0.698371 1. 0. 0. 205 1 206 0.790434 -3.69418 1.29027 1.92773 -2.57738 0.498071 3.62993 -1.50808 0.698371 1. 0. 0. 207 1 208 0.917634 -3.66448 -0.484829 1.92773 -2.57738 0.498071 5.55043 -0.952879 -0.490929 1. 0. 0. 209 1 210 -0.573766 -1.42458 -2.91753 1.76663 -0.360379 -2.99373 1.03283 1.01972 -2.14533 1. 0. 0. 211 1 170 212 2.19193 -1.51408 -0.867629 0.450934 -2.72908 -2.23353 1.76663 -0.360379 -2.99373 1. 0. 0. 171 213 1 214 0.917634 -3.66448 -0.484829 2.19193 -1.51408 -0.867629 5.55043 -0.952879 -0.490929 1. 0. 0. 215 1 216 1.15633 1.11082 0.326671 1.03283 1.01972 -2.14533 2.58823 2.50762 1.23707 1. 0. 0. 217 1 218 1.46453 0.112321 2.50927 3.24233 1.41142 2.47757 2.58823 2.50762 1.23707 1. 0. 0. 219 1 220 1.46453 0.112321 2.50927 3.24233 1.41142 2.47757 4.08983 -0.525479 2.10687 1. 0. 0. 221 1 222 1.46453 0.112321 2.50927 2.06173 -1.39848 1.79787 4.08983 -0.525479 2.10687 1. 0. 0. 223 1 224 0.790434 -3.69418 1.29027 2.06173 -1.39848 1.79787 3.62993 -1.50808 0.698371 1. 0. 0. 225 1 226 0.790434 -3.69418 1.29027 0.917634 -3.66448 -0.484829 1.92773 -2.57738 0.498071 1. 0. 0. 227 1 228 -0.573766 -1.42458 -2.91753 0.450934 -2.72908 -2.23353 1.76663 -0.360379 -2.99373 1. 0. 0. 229 1 230 -0.573766 -1.42458 -2.91753 1.03283 1.01972 -2.14533 -3.94777 1.63002 -1.27603 1. 0. 0. 231 1 172 232 0.917634 -3.66448 -0.484829 2.19193 -1.51408 -0.867629 0.450934 -2.72908 -2.23353 1. 0. 0. 173 233 1 174 0.917634 -3.66448 -0.484829 2.19193 -1.51408 -0.867629 5.55043 -0.952879 -0.490929 1. 0. 0. 175 1 176 0.917634 -3.66448 -0.484829 1.92773 -2.57738 0.498071 5.55043 -0.952879 -0.490929 1. 0. 0. 177 1 178 1.92773 -2.57738 0.498071 3.62993 -1.50808 0.698371 5.55043 -0.952879 -0.490929 1. 0. 0. 179 1 180 3.62993 -1.50808 0.698371 6.17523 -0.969279 1.17127 5.55043 -0.952879 -0.490929 1. 0. 0. 181 1 182 0.790434 -3.69418 1.29027 0.917634 -3.66448 -0.484829 1.92773 -2.57738 0.498071 1. 0. 0. 183 1 184 0.790434 -3.69418 1.29027 1.92773 -2.57738 0.498071 3.62993 -1.50808 0.698371 1. 0. 0. 185 1 186 0.790434 -3.69418 1.29027 2.06173 -1.39848 1.79787 3.62993 -1.50808 0.698371 1. 0. 0. 187 1 188 2.06173 -1.39848 1.79787 4.08983 -0.525479 2.10687 3.62993 -1.50808 0.698371 1. 0. 0. 189 1 190 4.08983 -0.525479 2.10687 3.62993 -1.50808 0.698371 6.17523 -0.969279 1.17127 1. 0. 0. 234 1.15633 1.11082 0.326671 1.03283 1.01972 -2.14533 -2.87097 2.29272 -0.0233288 1. 0. 0. 235 1 236 1.15633 1.11082 0.326671 2.58823 2.50762 1.23707 -2.87097 2.29272 -0.0233288 1. 0. 0. 237 1 238 1.46453 0.112321 2.50927 2.58823 2.50762 1.23707 -2.87097 2.29272 -0.0233288 1. 0. 0. 239 1 240 -0.287266 -1.67078 2.48017 1.46453 0.112321 2.50927 2.06173 -1.39848 1.79787 1. 0. 0. 191 241 1 192 242 0.790434 -3.69418 1.29027 -0.287266 -1.67078 2.48017 2.06173 -1.39848 1.79787 1. 0. 0. 193 243 1 194 -0.287266 -1.67078 2.48017 1.46453 0.112321 2.50927 2.06173 -1.39848 1.79787 1. 0. 0. 195 1 196 1.46453 0.112321 2.50927 2.06173 -1.39848 1.79787 4.08983 -0.525479 2.10687 1. 0. 0. 197 1 198 1.46453 0.112321 2.50927 3.24233 1.41142 2.47757 4.08983 -0.525479 2.10687 1. 0. 0. 199 1 200 3.24233 1.41142 2.47757 4.08983 -0.525479 2.10687 5.70193 1.54062 1.25007 1. 0. 0. 201 1 202 4.08983 -0.525479 2.10687 6.17523 -0.969279 1.17127 5.70193 1.54062 1.25007 1. 0. 0. 203 1 204 7.33693 1.04442 0.0886712 6.17523 -0.969279 1.17127 5.70193 1.54062 1.25007 1. 0. 0. 205 1 206 7.33693 1.04442 0.0886712 5.70193 1.54062 1.25007 7.56833 1.97852 -0.00632877 1. 0. 0. 207 1 208 3.24233 1.41142 2.47757 4.34293 2.22742 1.34117 5.70193 1.54062 1.25007 1. 0. 0. 209 1 210 3.24233 1.41142 2.47757 4.34293 2.22742 1.34117 2.58823 2.50762 1.23707 1. 0. 0. 211 1 212 4.34293 2.22742 1.34117 2.58823 2.50762 1.23707 5.11553 2.70122 -0.710229 1. 0. 0. 213 1 214 4.34293 2.22742 1.34117 5.11553 2.70122 -0.710229 7.56833 1.97852 -0.00632877 1. 0. 0. 215 1 216 4.34293 2.22742 1.34117 5.70193 1.54062 1.25007 7.56833 1.97852 -0.00632877 1. 0. 0. 217 1 218 1.46453 0.112321 2.50927 3.24233 1.41142 2.47757 2.58823 2.50762 1.23707 1. 0. 0. 219 1 220 1.46453 0.112321 2.50927 2.58823 2.50762 1.23707 -2.87097 2.29272 -0.0233288 1. 0. 0. 244 0.790434 -3.69418 1.29027 0.917634 -3.66448 -0.484829 -1.52417 -3.64138 0.503471 1. 0. 0. 245 1 246 -0.573766 -1.42458 -2.91753 0.450934 -2.72908 -2.23353 -1.62867 -3.74268 -1.79493 1. 0. 0. 247 1 248 -0.573766 -1.42458 -2.91753 -2.77417 -0.570279 -1.12083 -3.94777 1.63002 -1.27603 1. 0. 0. 249 1 250 1.03283 1.01972 -2.14533 -2.87097 2.29272 -0.0233288 -3.94777 1.63002 -1.27603 1. 0. 0. 251 1 252 0.917634 -3.66448 -0.484829 0.450934 -2.72908 -2.23353 -1.62867 -3.74268 -1.79493 1. 0. 0. 221 253 1 222 254 -0.759066 -0.265179 1.48487 1.46453 0.112321 2.50927 -2.87097 2.29272 -0.0233288 1. 0. 0. 223 255 1 256 -0.759066 -0.265179 1.48487 -0.287266 -1.67078 2.48017 1.46453 0.112321 2.50927 1. 0. 0. 257 1 258 0.790434 -3.69418 1.29027 -1.52417 -3.64138 0.503471 -0.287266 -1.67078 2.48017 1. 0. 0. 259 1 260 0.917634 -3.66448 -0.484829 -1.52417 -3.64138 0.503471 -1.62867 -3.74268 -1.79493 1. 0. 0. 261 1 262 -0.573766 -1.42458 -2.91753 -1.62867 -3.74268 -1.79493 -2.49667 -2.18078 -1.79993 1. 0. 0. 263 1 264 -0.573766 -1.42458 -2.91753 -2.49667 -2.18078 -1.79993 -2.77417 -0.570279 -1.12083 1. 0. 0. 265 1 266 -2.49667 -2.18078 -1.79993 -2.77417 -0.570279 -1.12083 -3.94777 1.63002 -1.27603 1. 0. 0. 267 1 268 -2.87097 2.29272 -0.0233288 -3.94777 1.63002 -1.27603 -4.04457 4.49292 -0.178529 1. 0. 0. 269 1 224 270 -0.759066 -0.265179 1.48487 -3.66127 0.565021 1.57007 -2.87097 2.29272 -0.0233288 1. 0. 0. 225 271 1 272 -0.759066 -0.265179 1.48487 -0.287266 -1.67078 2.48017 -3.66127 0.565021 1.57007 1. 0. 0. 273 1 274 -1.52417 -3.64138 0.503471 -0.287266 -1.67078 2.48017 -2.45927 -1.63678 1.72157 1. 0. 0. 275 1 276 -1.52417 -3.64138 0.503471 -1.62867 -3.74268 -1.79493 -3.90927 -3.49908 0.839771 1. 0. 0. 277 1 278 -1.62867 -3.74268 -1.79493 -2.49667 -2.18078 -1.79993 -4.17327 -2.53828 -0.635229 1. 0. 0. 279 1 280 -2.49667 -2.18078 -1.79993 -4.17327 -2.53828 -0.635229 -3.94777 1.63002 -1.27603 1. 0. 0. 281 1 282 2.58823 2.50762 1.23707 -2.87097 2.29272 -0.0233288 -4.04457 4.49292 -0.178529 1. 0. 0. 283 1 284 -3.94777 1.63002 -1.27603 -4.04457 4.49292 -0.178529 -5.12137 3.83022 -1.43123 1. 0. 0. 285 1 226 286 -3.66127 0.565021 1.57007 -2.87097 2.29272 -0.0233288 -4.83487 2.76522 1.41487 1. 0. 0. 227 287 1 288 -0.287266 -1.67078 2.48017 -2.45927 -1.63678 1.72157 -3.66127 0.565021 1.57007 1. 0. 0. 289 1 290 -1.52417 -3.64138 0.503471 -2.45927 -1.63678 1.72157 -3.90927 -3.49908 0.839771 1. 0. 0. 291 1 292 -1.62867 -3.74268 -1.79493 -4.17327 -2.53828 -0.635229 -3.90927 -3.49908 0.839771 1. 0. 0. 293 1 294 -4.17327 -2.53828 -0.635229 -3.94777 1.63002 -1.27603 -6.42617 1.74722 -0.982629 1. 0. 0. 295 1 296 -3.94777 1.63002 -1.27603 -5.12137 3.83022 -1.43123 -6.42617 1.74722 -0.982629 1. 0. 0. 297 1 298 -5.12137 3.83022 -1.43123 -7.11497 2.49352 0.479071 -6.42617 1.74722 -0.982629 1. 0. 0. 299 1 300 -6.27887 0.926121 0.589671 -7.11497 2.49352 0.479071 -6.42617 1.74722 -0.982629 1. 0. 0. 301 1 302 -4.17327 -2.53828 -0.635229 -6.27887 0.926121 0.589671 -6.42617 1.74722 -0.982629 1. 0. 0. 303 1 304 -4.75167 -1.93408 0.935971 -4.17327 -2.53828 -0.635229 -6.27887 0.926121 0.589671 1. 0. 0. 305 1 306 -4.75167 -1.93408 0.935971 -3.66127 0.565021 1.57007 -6.27887 0.926121 0.589671 1. 0. 0. 307 1 308 -3.66127 0.565021 1.57007 -4.83487 2.76522 1.41487 -6.27887 0.926121 0.589671 1. 0. 0. 309 1 310 -4.83487 2.76522 1.41487 -6.27887 0.926121 0.589671 -7.11497 2.49352 0.479071 1. 0. 0. 311 1 312 -4.83487 2.76522 1.41487 -5.81017 4.57652 0.0304712 -7.11497 2.49352 0.479071 1. 0. 0. 313 1 314 -5.81017 4.57652 0.0304712 -5.12137 3.83022 -1.43123 -7.11497 2.49352 0.479071 1. 0. 0. 315 1 316 -5.81017 4.57652 0.0304712 -4.04457 4.49292 -0.178529 -5.12137 3.83022 -1.43123 1. 0. 0. 317 1 318 -4.83487 2.76522 1.41487 -5.81017 4.57652 0.0304712 -4.04457 4.49292 -0.178529 1. 0. 0. 319 1 228 320 -2.87097 2.29272 -0.0233288 -4.83487 2.76522 1.41487 -4.04457 4.49292 -0.178529 1. 0. 0. 229 321 1 230 322 2.58823 2.50762 1.23707 -2.87097 2.29272 -0.0233288 -4.04457 4.49292 -0.178529 1. 0. 0. 231 323 1 232 -0.759066 -0.265179 1.48487 -0.287266 -1.67078 2.48017 -3.66127 0.565021 1.57007 1. 0. 0.233 1234 -0.759066 -0.265179 1.48487 -0.287266 -1.67078 2.48017 1.46453 0.112321 2.50927 1. 0. 0.235 1236 -0.287266 -1.67078 2.48017 -2.45927 -1.63678 1.72157 -3.66127 0.565021 1.57007 1. 0. 0.237 1238 324 -2.45927 -1.63678 1.72157 -4.75167 -1.93408 0.935971 -3.66127 0.565021 1.57007 1. 0. 0. 239 325 1 240 -4.75167 -1.93408 0.935971 -3.66127 0.565021 1.57007 -6.27887 0.926121 0.589671 1. 0. 0.241 1242 -3.66127 0.565021 1.57007 -4.83487 2.76522 1.41487 -6.27887 0.926121 0.589671 1. 0. 0.243 1244 -4.83487 2.76522 1.41487 -6.27887 0.926121 0.589671 -7.11497 2.49352 0.479071 1. 0. 0.245 1246 326 -2.45927 -1.63678 1.72157 -4.75167 -1.93408 0.935971 -3.90927 -3.49908 0.839771 1. 0. 0. 247 327 1 248 -1.52417 -3.64138 0.503471 -2.45927 -1.63678 1.72157 -3.90927 -3.49908 0.839771 1. 0. 0.249 1250 -1.52417 -3.64138 0.503471 -0.287266 -1.67078 2.48017 -2.45927 -1.63678 1.72157 1. 0. 0.251 1252 0.790434 -3.69418 1.29027 -1.52417 -3.64138 0.503471 -0.287266 -1.67078 2.48017 1. 0. 0.253 1254 2.58823 2.50762 1.23707 -2.87097 2.29272 -0.0233288 -4.04457 4.49292 -0.178529 1. 0. 0.255 1256 1.15633 1.11082 0.326671 2.58823 2.50762 1.23707 -2.87097 2.29272 -0.0233288 1. 0. 0.257 1258 1.15633 1.11082 0.326671 1.03283 1.01972 -2.14533 -2.87097 2.29272 -0.0233288 1. 0. 0.259 1260 1.15633 1.11082 0.326671 1.03283 1.01972 -2.14533 2.58823 2.50762 1.23707 1. 0. 0.261 1262 1.03283 1.01972 -2.14533 2.58823 2.50762 1.23707 5.11553 2.70122 -0.710229 1. 0. 0.263 1264 1.03283 1.01972 -2.14533 3.62023 1.25552 -2.86813 5.11553 2.70122 -0.710229 1. 0. 0.265 1266 -4.83487 2.76522 1.41487 -5.81017 4.57652 0.0304712 -4.04457 4.49292 -0.178529 1. 0. 0.267 1268 -4.83487 2.76522 1.41487 -5.81017 4.57652 0.0304712 -7.11497 2.49352 0.479071 1. 0. 0.269 1270 1.03283 1.01972 -2.14533 -2.87097 2.29272 -0.0233288 -3.94777 1.63002 -1.27603 1. 0. 0.271 1272 -2.87097 2.29272 -0.0233288 -3.94777 1.63002 -1.27603 -4.04457 4.49292 -0.178529 1. 0. 0.273 1274 -3.94777 1.63002 -1.27603 -4.04457 4.49292 -0.178529 -5.12137 3.83022 -1.43123 1. 0. 0.275 1276 -0.573766 -1.42458 -2.91753 1.03283 1.01972 -2.14533 -3.94777 1.63002 -1.27603 1. 0. 0.277 1278 -0.573766 -1.42458 -2.91753 1.76663 -0.360379 -2.99373 1.03283 1.01972 -2.14533 1. 0. 0.279 1280 1.76663 -0.360379 -2.99373 1.03283 1.01972 -2.14533 3.62023 1.25552 -2.86813 1. 0. 0.281 1282 -0.573766 -1.42458 -2.91753 -2.77417 -0.570279 -1.12083 -3.94777 1.63002 -1.27603 1. 0. 0.283 1284 -0.573766 -1.42458 -2.91753 -2.49667 -2.18078 -1.79993 -2.77417 -0.570279 -1.12083 1. 0. 0.285 1286 -2.49667 -2.18078 -1.79993 -2.77417 -0.570279 -1.12083 -3.94777 1.63002 -1.27603 1. 0. 0.287 1288 -2.49667 -2.18078 -1.79993 -4.17327 -2.53828 -0.635229 -3.94777 1.63002 -1.27603 1. 0. 0.289 1290 -4.17327 -2.53828 -0.635229 -3.94777 1.63002 -1.27603 -6.42617 1.74722 -0.982629 1. 0. 0.291 1292 -3.94777 1.63002 -1.27603 -5.12137 3.83022 -1.43123 -6.42617 1.74722 -0.982629 1. 0. 0.293 1294 -0.573766 -1.42458 -2.91753 -1.62867 -3.74268 -1.79493 -2.49667 -2.18078 -1.79993 1. 0. 0.295 1296 -0.573766 -1.42458 -2.91753 0.450934 -2.72908 -2.23353 -1.62867 -3.74268 -1.79493 1. 0. 0.297 1298 -0.573766 -1.42458 -2.91753 0.450934 -2.72908 -2.23353 1.76663 -0.360379 -2.99373 1. 0. 0.299 1300 -1.62867 -3.74268 -1.79493 -2.49667 -2.18078 -1.79993 -4.17327 -2.53828 -0.635229 1. 0. 0.301 1302 -1.62867 -3.74268 -1.79493 -4.17327 -2.53828 -0.635229 -3.90927 -3.49908 0.839771 1. 0. 0.303 1304 -1.52417 -3.64138 0.503471 -1.62867 -3.74268 -1.79493 -3.90927 -3.49908 0.839771 1. 0. 0.305 1306 0.917634 -3.66448 -0.484829 -1.52417 -3.64138 0.503471 -1.62867 -3.74268 -1.79493 1. 0. 0.307 1308 0.790434 -3.69418 1.29027 0.917634 -3.66448 -0.484829 -1.52417 -3.64138 0.503471 1. 0. 0.309 1310 0.917634 -3.66448 -0.484829 0.450934 -2.72908 -2.23353 -1.62867 -3.74268 -1.79493 1. 0. 0.311 1312 328 -4.75167 -1.93408 0.935971 -4.17327 -2.53828 -0.635229 -3.90927 -3.49908 0.839771 1. 0. 0. 313 1314 -4.75167 -1.93408 0.935971 -4.17327 -2.53828 -0.635229 -6.27887 0.926121 0.589671 1. 0. 0.315 1316 -4.17327 -2.53828 -0.635229 -6.27887 0.926121 0.589671 -6.42617 1.74722 -0.982629 1. 0. 0.317 1318 -6.27887 0.926121 0.589671 -7.11497 2.49352 0.479071 -6.42617 1.74722 -0.982629 1. 0. 0.319 1320 3.62023 1.25552 -2.86813 5.68853 1.38852 -1.77723 5.11553 2.70122 -0.710229 1. 0. 0.321 1322 5.68853 1.38852 -1.77723 5.11553 2.70122 -0.710229 7.56833 1.97852 -0.00632877 1. 0. 0.323 1324 -5.12137 3.83022 -1.43123 -7.11497 2.49352 0.479071 -6.42617 1.74722 -0.982629 1. 0. 0.325 1326 -5.81017 4.57652 0.0304712 -5.12137 3.83022 -1.43123 -7.11497 2.49352 0.479071 1. 0. 0.327 1328 -5.81017 4.57652 0.0304712 -4.04457 4.49292 -0.178529 -5.12137 3.83022 -1.43123 1. 0. 0.329 329 9 330 330 # terminating special property … … 333 333 25.0 0.6 -1.0 -1.0 -1.0 0.2 0 0 0 0 334 334 2 335 -4. 99203 4.29989 -0.5264295 1 0 0335 -4.27807 -2.65715 0.380171 5 1 0 0 336 336 9 337 337 terminating special property -
tests/testsuite.at
r0b2dd2 r009e37b 12 12 AT_CHECK([pwd],[ignore],[ignore]) 13 13 AT_CHECK([../../molecuilder -v], 0, [stdout], [ignore]) 14 AT_CHECK([fgrep olecuilder stdout], 0, [ignore], [ignore])14 AT_CHECK([fgrep molecuilder stdout], 0, [ignore], [ignore]) 15 15 AT_CHECK([../../molecuilder -h], 0, [stdout], [ignore]) 16 16 AT_CHECK([fgrep "Give this help screen" stdout], 0, [ignore], [ignore]) 17 AT_CHECK([../../molecuilder -e], 255, [ignore], [stderr])17 AT_CHECK([../../molecuilder -e], 0, [ignore], [stderr]) 18 18 AT_CHECK([fgrep "Not enough or invalid arguments" stderr], 0, [ignore], [ignore]) 19 19 AT_CHECK([../../molecuilder test.conf], 0, [stdout], [stderr]) … … 78 78 AT_SETUP([Simple configuration - invalid commands on present configs]) 79 79 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/regression/Simple_configuration/7/pre/test.conf .], 0) 80 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -t], 255, [ignore], [stderr]) 81 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 82 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -s -b -E -c -b -a -U -T -u], 255, [ignore], [stderr]) 83 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 84 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -b -E -c -b -a -U -T -u], 255, [ignore], [stderr]) 85 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 86 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -E -c -b -a -U -T -u], 255, [ignore], [stderr]) 87 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 88 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -c -b -a -U -T -u], 255, [ignore], [stderr]) 89 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 90 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -b -a -U -T -u], 255, [ignore], [stderr]) 91 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 92 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -a -U -T -u], 255, [ignore], [stderr]) 93 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 94 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -U -T -u], 255, [ignore], [stderr]) 95 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 96 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -T -u], 255, [ignore], [stderr]) 97 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 98 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -u], 255, [ignore], [stderr]) 99 AT_CHECK([fgrep -c "CRITICAL: Not enough or invalid" stderr], 0, [ignore], [ignore]) 80 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -t -s -b -E -c -b -a -U -T -u], 255, [ignore], [stderr]) 81 AT_CHECK([fgrep -c "Not enough or invalid" stderr], 0, [9 82 ], [ignore]) 100 83 AT_CLEANUP 101 84 … … 105 88 AT_SETUP([Graph - DFS analysis]) 106 89 AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/regression/Graph/1/pre/test.conf .], 0) 107 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ - vvv -D 2.], 0, [stdout], [stderr])90 AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -D 2.], 0, [stdout], [stderr]) 108 91 AT_CHECK([fgrep -c "No rings were detected in the molecular structure." stdout], 0, [1 109 92 ], [ignore]) … … 151 134 AT_CHECK([file=ConvexEnvelope.dat; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/regression/Tesselation/2/post/$file], 0, [ignore], [ignore]) 152 135 AT_CHECK([file=ConvexEnvelope.r3d; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/regression/Tesselation/2/post/$file], 0, [ignore], [ignore]) 153 AT_CHECK([fgrep " tesselated volume area is 16.4016angstrom^3" stdout], 0, [ignore], [ignore])136 AT_CHECK([fgrep "RESULT: The summed volume is 16.401577 angstrom^3" stdout], 0, [ignore], [ignore]) 154 137 AT_CHECK([diff ConvexEnvelope.dat NonConvexEnvelope.dat], 0, [ignore], [ignore]) 155 138 AT_CLEANUP … … 169 152 #AT_CHECK([file=ConvexEnvelope.dat; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/regression/Tesselation/4/post/$file], 0, [ignore], [ignore]) 170 153 #AT_CHECK([file=ConvexEnvelope.r3d; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/regression/Tesselation/4/post/$file], 0, [ignore], [ignore]) 171 #AT_CHECK([fgrep " tesselated volume area is 16.4016angstrom^3" stdout], 0, [ignore], [ignore])154 #AT_CHECK([fgrep "RESULT: The summed volume is 16.401577 angstrom^3" stdout], 0, [ignore], [ignore]) 172 155 #AT_CLEANUP 173 156
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