| [6253ed] | 1 | #
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 | 2 | #    MoleCuilder - creates and alters molecular systems
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 | 3 | #    Copyright (C) 2008-2012 University of Bonn
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 | 4 | #
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 | 5 | #    This program is free software: you can redistribute it and/or modify
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 | 6 | #    it under the terms of the GNU General Public License as published by
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 | 7 | #    the Free Software Foundation, either version 3 of the License, or
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 | 8 | #    (at your option) any later version.
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 | 9 | #
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 | 10 | #    This program is distributed in the hope that it will be useful,
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 | 11 | #    but WITHOUT ANY WARRANTY; without even the implied warranty of
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 | 12 | #    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 | 13 | #    GNU General Public License for more details.
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 | 14 | #
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 | 15 | #    You should have received a copy of the GNU General Public License
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 | 16 | #    along with this program.  If not, see <http://www.gnu.org/licenses/>.
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 | 17 | #
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| [c52e08] | 18 | ### Subgraph dissection with specific boundary conditions
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 | 19 | 
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 | 20 | AT_SETUP([Graph - subgraph dissection with Wrap BC])
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 | 21 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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 | 22 | 
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 | 23 | file=water.xyz
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 | 24 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 25 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 26 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 27 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 28 | file=water-bounced.xyz
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 | 29 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 30 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 31 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 32 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 33 | file=water-wrapped.xyz
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 | 34 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 35 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 36 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 37 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 38 | 
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 | 39 | AT_CLEANUP
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 | 40 | 
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 | 41 | AT_SETUP([Graph - subgraph dissection with Bounce BC])
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 | 42 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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 | 43 | 
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 | 44 | file=water.xyz
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 | 45 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 46 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 47 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 48 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 49 | file=water-bounced.xyz
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 | 50 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 51 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 52 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 53 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 54 | file=water-wrapped.xyz
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 | 55 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 56 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 57 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 58 | AT_CHECK([fgrep "I scanned 2 molecules." stdout], 0, [ignore], [ignore])
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 | 59 | 
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 | 60 | AT_CLEANUP
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 | 61 | 
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 | 62 | AT_SETUP([Graph - subgraph dissection with Ignore BC])
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 | 63 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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 | 64 | 
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 | 65 | file=water.xyz
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 | 66 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 67 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 68 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 69 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 70 | file=water-bounced.xyz
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 | 71 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 72 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 73 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 74 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 75 | file=water-wrapped.xyz
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 | 76 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 77 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 78 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 79 | AT_CHECK([fgrep "I scanned 2 molecules." stdout], 0, [ignore], [ignore])
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 | 80 | 
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 | 81 | AT_CLEANUP
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 | 82 | 
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