| 1 | # | 
|---|
| 2 | #    MoleCuilder - creates and alters molecular systems | 
|---|
| 3 | #    Copyright (C) 2008-2012 University of Bonn | 
|---|
| 4 | # | 
|---|
| 5 | #    This program is free software: you can redistribute it and/or modify | 
|---|
| 6 | #    it under the terms of the GNU General Public License as published by | 
|---|
| 7 | #    the Free Software Foundation, either version 3 of the License, or | 
|---|
| 8 | #    (at your option) any later version. | 
|---|
| 9 | # | 
|---|
| 10 | #    This program is distributed in the hope that it will be useful, | 
|---|
| 11 | #    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
|---|
| 12 | #    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
|---|
| 13 | #    GNU General Public License for more details. | 
|---|
| 14 | # | 
|---|
| 15 | #    You should have received a copy of the GNU General Public License | 
|---|
| 16 | #    along with this program.  If not, see <http://www.gnu.org/licenses/>. | 
|---|
| 17 | # | 
|---|
| 18 | ### calculate fragment energies with mpqc | 
|---|
| 19 |  | 
|---|
| 20 | AT_SETUP([Fragmentation Automation - Fragmentation fails correctly]) | 
|---|
| 21 | AT_KEYWORDS([fragmentation automation fragment-molecule fragmentation-automation]) | 
|---|
| 22 |  | 
|---|
| 23 | file=test.conf | 
|---|
| 24 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Fragmentation/FragmentMolecule/pre/test.conf $file], 0) | 
|---|
| 25 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
|---|
| 26 | AT_CHECK([../../molecuilder \ | 
|---|
| 27 | -i $file \ | 
|---|
| 28 | --subgraph-dissection \ | 
|---|
| 29 | --verbose 1 \ | 
|---|
| 30 | --select-molecule-by-id 0 \ | 
|---|
| 31 | --select-molecules-atoms \ | 
|---|
| 32 | --fragment-molecule BondFragment \ | 
|---|
| 33 | --distance 1.55 \ | 
|---|
| 34 | --order 2 \ | 
|---|
| 35 | --fragment-automation \ | 
|---|
| 36 | --fragment-executable /bin/false], 5, [stdout], [stderr]) | 
|---|
| 37 |  | 
|---|
| 38 | AT_CLEANUP | 
|---|
| 39 |  | 
|---|
| 40 | AT_SETUP([Fragmentation Automation - Fragmentation fails, more Actions still in queue]) | 
|---|
| 41 | AT_KEYWORDS([fragmentation automation fragment-molecule fragmentation-automation]) | 
|---|
| 42 |  | 
|---|
| 43 | file=test.conf | 
|---|
| 44 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Fragmentation/FragmentMolecule/pre/test.conf $file], 0) | 
|---|
| 45 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore]) | 
|---|
| 46 | AT_CHECK([../../molecuilder \ | 
|---|
| 47 | -i $file \ | 
|---|
| 48 | --subgraph-dissection \ | 
|---|
| 49 | --verbose 1 \ | 
|---|
| 50 | --select-molecule-by-id 0 \ | 
|---|
| 51 | --select-molecules-atoms \ | 
|---|
| 52 | --fragment-molecule BondFragment \ | 
|---|
| 53 | --distance 1.55 \ | 
|---|
| 54 | --order 2 \ | 
|---|
| 55 | --fragment-automation \ | 
|---|
| 56 | --fragment-executable /bin/false \ | 
|---|
| 57 | --analyse-fragment-results \ | 
|---|
| 58 | --fragment-prefix $FILENAME \ | 
|---|
| 59 | --fragment-resultfile ${FILENAME}_results.dat], 5, [stdout], [stderr]) | 
|---|
| 60 |  | 
|---|
| 61 | AT_CLEANUP | 
|---|