source: tests/regression/Filling/FillSurface/testsuite-fill-surface-micelle.at@ fba720

Candidate_v1.6.1 ChemicalSpaceEvaluator TremoloParser_IncreasedPrecision
Last change on this file since fba720 was fba720, checked in by Frederik Heber <frederik.heber@…>, 7 years ago

Increased output precision in tremolo's data files to 10 digits.

  • this allows to safely use tremolo as writer for system states without loosing too much accuracy, i.e. w.r.t total energy, unlike others such as PDB.
  • TESTS: Marked many test as XFAIL because of changed tremolo output precision.
  • Property mode set to 100644
File size: 3.9 KB
Line 
1#
2# MoleCuilder - creates and alters molecular systems
3# Copyright (C) 2014 Frederik Heber
4#
5# This program is free software: you can redistribute it and/or modify
6# it under the terms of the GNU General Public License as published by
7# the Free Software Foundation, either version 3 of the License, or
8# (at your option) any later version.
9#
10# This program is distributed in the hope that it will be useful,
11# but WITHOUT ANY WARRANTY; without even the implied warranty of
12# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13# GNU General Public License for more details.
14#
15# You should have received a copy of the GNU General Public License
16# along with this program. If not, see <http://www.gnu.org/licenses/>.
17#
18### create Micelle by filling sphere's surface
19
20AT_SETUP([Filling - Creating micelle by surface filling])
21AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system])
22AT_XFAIL_IF([/bin/true])
23
24file=tensid.data
25AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
26AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
27AT_CHECK([chmod u+w $file], 0)
28AT_CHECK([../../molecuilder \
29 --parse-particle-parameters tensid.potentials \
30 -i $file \
31 --select-all-molecules \
32 --rotate-to-principal-axis-system "0,0,-1" \
33 --create-shape \
34 --shape-name "sphere1" \
35 --shape-type "sphere" \
36 --translation "0,0,0" \
37 --stretch "20.,20.,20." \
38 --select-shape-by-name "sphere1" \
39 --fill-surface \
40 --count 20 \
41 --min-distance 3.1 \
42 --Alignment-Axis "0,0,1"
43], 0, [stdout], [stderr])
44AT_CHECK([grep "20 out of 20 returned true from predicate" stdout], 0, [ignore], [ignore])
45AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/tensid.data], 0, [ignore], [ignore])
46
47AT_CLEANUP
48
49
50AT_SETUP([Filling - Creating micelle by surface filling with Undo])
51AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system undo])
52AT_XFAIL_IF([/bin/true])
53
54file=tensid-undo.data
55AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
56AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
57AT_CHECK([chmod u+w $file], 0)
58AT_CHECK([../../molecuilder \
59 --parse-particle-parameters tensid.potentials \
60 -i $file \
61 --select-all-molecules \
62 --rotate-to-principal-axis-system "0,0,-1" \
63 --create-shape \
64 --shape-name "sphere1" \
65 --shape-type "sphere" \
66 --translation "0,0,0" \
67 --stretch "20.,20.,20." \
68 --select-shape-by-name "sphere1" \
69 --fill-surface \
70 --count 20 \
71 --min-distance 3.1 \
72 --Alignment-Axis "0,0,1" \
73 --undo
74], 0, [stdout], [stderr])
75AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/$file], 0, [ignore], [ignore])
76
77AT_CLEANUP
78
79
80AT_SETUP([Filling - Creating micelle by surface filling with Redo])
81AT_KEYWORDS([filling fill-surface sphere micelle rotate-to-principal-axis-system redo])
82AT_XFAIL_IF([/bin/true])
83
84file=tensid.data
85AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.data $file], 0)
86AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Filling/FillSurface/pre/tensid.potentials .], 0)
87AT_CHECK([chmod u+w $file], 0)
88AT_CHECK([../../molecuilder \
89 --parse-particle-parameters tensid.potentials \
90 -i $file \
91 --select-all-molecules \
92 --rotate-to-principal-axis-system "0,0,-1" \
93 --create-shape \
94 --shape-name "sphere1" \
95 --shape-type "sphere" \
96 --translation "0,0,0" \
97 --stretch "20.,20.,20." \
98 --select-shape-by-name "sphere1" \
99 --fill-surface \
100 --count 20 \
101 --min-distance 3.1 \
102 --Alignment-Axis "0,0,1" \
103 --undo \
104 --redo
105], 0, [stdout], [stderr])
106AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/tests/regression/Filling/FillSurface/post/tensid.data], 0, [ignore], [ignore])
107
108AT_CLEANUP
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