| [3493da] | 1 | #key    value | 
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|  | 2 | actionname      "help" | 
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|  | 3 | add-atom        "1" | 
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|  | 4 | add-empty-boundary      "" | 
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| [cb7676] | 5 | Alignment-Axis  "0,0,1" | 
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| [3493da] | 6 | angle-x "0." | 
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|  | 7 | angle-x "0" | 
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|  | 8 | angle-y "0." | 
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|  | 9 | angle-y "0" | 
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|  | 10 | angle-z "0 " | 
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|  | 11 | angle-z "0." | 
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|  | 12 | angle-z "0" | 
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|  | 13 | axis    "0 0 1" | 
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|  | 14 | axis    "0 1 0" | 
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|  | 15 | axis    "1 2 1" | 
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|  | 16 | bin-end "10" | 
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|  | 17 | bin-end "20" | 
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|  | 18 | bin-end "359" | 
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|  | 19 | bin-end "359.5" | 
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|  | 20 | bin-end "5" | 
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|  | 21 | bin-output-file "bin_output-10.csv" | 
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|  | 22 | bin-output-file "bin_output-20.csv" | 
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|  | 23 | bin-output-file "bin_output-5.csv" | 
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|  | 24 | bin-output-file "bin_output.csv" | 
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|  | 25 | bin-output-file "emptybox_histogram.dat" | 
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|  | 26 | bin-output-file "hydrogenbox_histogram.dat" | 
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|  | 27 | bin-output-file "waterbox_histogram.dat" | 
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|  | 28 | bin-output-file "waterbox-mirrored_histogram.dat" | 
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|  | 29 | bin-start       "0" | 
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|  | 30 | bin-start       "-0.5" | 
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|  | 31 | bin-start       "10" | 
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|  | 32 | bin-start       "5" | 
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|  | 33 | bin-width       "1." | 
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|  | 34 | bond-file       "bond.dat" | 
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|  | 35 | bond-table      "table.dat" | 
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| [f89b45] | 36 | calculate-bounding-box  "" | 
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| [55f299] | 37 | calculate-molar-mass    "" | 
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| [2db053] | 38 | center  "10. 10. 10." | 
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| [3493da] | 39 | center-in-box   "10 0 0 10 0 10" | 
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|  | 40 | change-box      "10 0 0 10 0 10" | 
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|  | 41 | change-element  "H" | 
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|  | 42 | change-molname  "water" | 
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|  | 43 | convex-file     "convexfile" | 
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|  | 44 | copy-molecule   "0" | 
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| [2db053] | 45 | count   "12" | 
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| [5ab796] | 46 | create-micelle  "200" | 
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| [3493da] | 47 | default-molname "molname" | 
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|  | 48 | deltat  "0.01" | 
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|  | 49 | depth-first-search      "2." | 
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| [5ab796] | 50 | dipole-angular-correlation      "H2O" | 
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| [3493da] | 51 | distance        "1.55" | 
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|  | 52 | distances       "3.1 3.1 3.1" | 
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|  | 53 | distances       "3.1 3.1 3.1" | 
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|  | 54 | distance-to-boundary    "1." | 
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|  | 55 | distance-to-molecule    "1.5" | 
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|  | 56 | distance-to-molecule    "2.1" | 
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|  | 57 | domain-position "0.  0. 0." | 
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|  | 58 | domain-position "0 0 0" | 
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|  | 59 | domain-position "10. 10. 10." | 
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|  | 60 | DoRotate        "0" | 
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| [5ab796] | 61 | DoSaturate      "0" | 
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| [3493da] | 62 | element-db      "./" | 
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|  | 63 | elements        "1" | 
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|  | 64 | elements        "1 8" | 
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|  | 65 | end-step        "1" | 
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|  | 66 | fastparsing     "1" | 
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| [531f27] | 67 | filename        "test.exttypes" | 
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| [3493da] | 68 | fill-molecule   "filler.xyz" | 
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|  | 69 | fill-void       "hydrogen.xyz" | 
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|  | 70 | fill-void       "water.data" | 
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|  | 71 | fill-void       "water.xyz" | 
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| [edecba] | 72 | fragment-executable     "mpqc" | 
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|  | 73 | fragment-jobs   "Job00.in" | 
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| [3493da] | 74 | fragment-molecule       "./" | 
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| [edecba] | 75 | fragment-path   "test/" | 
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| [3493da] | 76 | id-mapping      "1" | 
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|  | 77 | input   "test.data" | 
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|  | 78 | interpolation-steps     "9" | 
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|  | 79 | keep-fixed-CenterOfMass "0" | 
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|  | 80 | load    "test.data" | 
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|  | 81 | MaxDistance     "-1" | 
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|  | 82 | MDSteps "1" | 
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| [a88452] | 83 | mesh-offset     "0.5,0.5,0.5" | 
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|  | 84 | mesh-size       "10,10,10" | 
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|  | 85 | min-distance    "1." | 
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| [3493da] | 86 | molecule-by-id  "0" | 
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|  | 87 | nonconvex-envelope      "25" | 
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|  | 88 | nonconvex-file  "NonConvexEnvelope" | 
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|  | 89 | nonconvex-file  "nonconvexfile" | 
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|  | 90 | offset  "0" | 
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|  | 91 | offset  "1" | 
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|  | 92 | order   "2" | 
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|  | 93 | output-file     "emptybox_values.dat" | 
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|  | 94 | output-file     "hydrogenbox_values.dat" | 
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|  | 95 | output-file     "output-10.csv" | 
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|  | 96 | output-file     "output-20.csv" | 
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|  | 97 | output-file     "output-5.csv" | 
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|  | 98 | output-file     "output.csv" | 
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|  | 99 | output-file     "waterbox-mirrored_values.dat" | 
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|  | 100 | output-file     "waterbox_values.dat" | 
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| [072f0e] | 101 | output-as       "store.conf" | 
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|  | 102 | output-as       "store.data" | 
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|  | 103 | output-as       "store.pdb" | 
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|  | 104 | output-as       "store.xyz" | 
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|  | 105 | output-as       "test.in" | 
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| [5ab796] | 106 | output-types    "xyz" | 
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|  | 107 | output-types    "xyz mpqc" | 
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| [3493da] | 108 | parse-tremolo-potentials        "argon.potentials" | 
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|  | 109 | parse-tremolo-potentials        "tensid.potentials" | 
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| [5ab796] | 110 | parser-parameters       "mpqc" | 
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|  | 111 | parser-parameters       "psi3" | 
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| [3493da] | 112 | periodic        "0" | 
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|  | 113 | position        "0 0 0" | 
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|  | 114 | position        "0 0 1" | 
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|  | 115 | position        "0 0 10" | 
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|  | 116 | position        "10 10 10" | 
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|  | 117 | position        "10. 10. 10." | 
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|  | 118 | position        "1 2 1" | 
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|  | 119 | position        "5.63 5.71 5.71" | 
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|  | 120 | position        "7.283585982 3.275186040 3.535886037" | 
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|  | 121 | position        "9.78 2.64 2.64" | 
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| [5ab796] | 122 | radius  "20." | 
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| [3493da] | 123 | random-atom-displacement        "0." | 
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|  | 124 | random-molecule-displacement    "0." | 
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|  | 125 | random-number-distribution-parameters   "max=20;" | 
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|  | 126 | random-number-engine-parameters "seed=2;" | 
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|  | 127 | repeat-box      "1 1 1" | 
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| [ca331c] | 128 | reset   1 | 
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| [3493da] | 129 | rotate-around-origin    "180." | 
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|  | 130 | rotate-around-origin    "20." | 
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|  | 131 | rotate-around-origin    "360." | 
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|  | 132 | rotate-around-origin    "90." | 
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|  | 133 | rotate-around-self      "180." | 
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|  | 134 | rotate-around-self      "180" | 
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|  | 135 | rotate-around-self      "20." | 
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|  | 136 | rotate-around-self      "360." | 
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|  | 137 | rotate-around-self      "90." | 
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|  | 138 | rotate-to-principal-axis-system "" | 
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|  | 139 | save-adjacency  "test.adj" | 
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|  | 140 | save-bonds      "test.bond" | 
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|  | 141 | save-selected-atoms     "testsave.xyz" | 
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| [531f27] | 142 | save-selected-atoms-as-exttypes "test.exttypes" | 
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| [3493da] | 143 | save-selected-molecules "testsave.xyz" | 
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|  | 144 | save-temperature        "test.ekin" | 
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|  | 145 | scale-box       "0.5 1. 0.9" | 
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|  | 146 | select-atom-by-element  "1" | 
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|  | 147 | select-atom-by-element  "4" | 
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|  | 148 | select-atom-by-id       "0" | 
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| [61c364] | 149 | select-atom-by-order    "1" | 
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| [3493da] | 150 | select-atoms-inside-cuboid      "10 10 10" | 
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|  | 151 | select-atoms-inside-cuboid      "2 2 2" | 
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|  | 152 | select-atoms-inside-sphere      "0.2" | 
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|  | 153 | select-atoms-inside-sphere      "10" | 
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|  | 154 | select-atoms-inside-sphere      "7." | 
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|  | 155 | select-molecule-by-id   "0" | 
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|  | 156 | select-molecule-by-id   "1" | 
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|  | 157 | select-molecule-by-id   "4" | 
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|  | 158 | select-molecule-by-order        "-1" | 
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|  | 159 | select-molecule-by-order        "1" | 
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|  | 160 | select-molecule-by-order        "-2" | 
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|  | 161 | select-molecule-by-order        "2" | 
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|  | 162 | select-molecules-by-formula     "C2H5(OH)" | 
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|  | 163 | select-molecules-by-formula     "C6H6" | 
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|  | 164 | select-molecules-by-formula     "H2O" | 
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|  | 165 | select-molecules-by-name        "water" | 
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| [edecba] | 166 | server-address  "127.0.0.1" | 
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|  | 167 | server-port     "1026" | 
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| [c52e08] | 168 | set-boundary-conditions "Wrap, Wrap, Wrap" | 
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| [5ab796] | 169 | set-parser-parameters   "basis = 4-31G" | 
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|  | 170 | set-parser-parameters   "basis = 4-31G;maxiter=499;theory=CLKS;" | 
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|  | 171 | set-parser-parameters   "maxiter = 499" | 
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|  | 172 | set-parser-parameters   "theory=CLKS" | 
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|  | 173 | set-parser-parameters   "wfn=scf" | 
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|  | 174 | set-parser-parameters   "ref=uhf" | 
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| [3493da] | 175 | set-output      "tremolo" | 
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|  | 176 | set-random-number-distribution  "uniform_int" | 
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|  | 177 | set-random-number-engine        "lagged_fibonacci607" | 
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|  | 178 | set-tremolo-atomdata    "ATOMDATA type id x=3" | 
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|  | 179 | set-world-time  "10" | 
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|  | 180 | skiplines       "1" | 
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|  | 181 | skiplines       "2" | 
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|  | 182 | start-step      "0" | 
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|  | 183 | suspend-in-water        "1.0" | 
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| [345eda] | 184 | tesselation-radius      "5." | 
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| [5ab796] | 185 | time-step-zero  "0" | 
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| [3493da] | 186 | translate-atoms "1. 0. 0." | 
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|  | 187 | unselect-atom-by-element        "1" | 
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|  | 188 | unselect-atom-by-element        "4" | 
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|  | 189 | unselect-atom-by-id     "0" | 
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| [61c364] | 190 | unselect-atom-by-order  "1" | 
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| [3493da] | 191 | unselect-atoms-inside-cuboid    "10 10 10" | 
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|  | 192 | unselect-atoms-inside-cuboid    "2 2 2" | 
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|  | 193 | unselect-atoms-inside-sphere    "10" | 
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|  | 194 | unselect-atoms-inside-sphere    "7." | 
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|  | 195 | unselect-molecule-by-id "0" | 
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|  | 196 | unselect-molecule-by-id "4" | 
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|  | 197 | unselect-molecule-by-order      "-1" | 
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|  | 198 | unselect-molecule-by-order      "1" | 
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|  | 199 | unselect-molecule-by-order      "-2" | 
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|  | 200 | unselect-molecule-by-order      "2" | 
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|  | 201 | unselect-molecules-by-formula   "C2H5(OH)" | 
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|  | 202 | unselect-molecules-by-formula   "C3H8" | 
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|  | 203 | unselect-molecules-by-formula   "C6H6" | 
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|  | 204 | unselect-molecules-by-formula   "H2O" | 
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|  | 205 | unselect-molecules-by-name      "water" | 
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|  | 206 | verbose "3" | 
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|  | 207 | verlet-integration      "forces.dat" | 
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