source: src/unittests/Makefile.am@ 6ff0c8

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 6ff0c8 was 3f9eba, checked in by Frederik Heber <heber@…>, 14 years ago

New classes for random number generation.

  • we use boost::random as a basis. It implements a lot of pseudo-random engines and various distributions. However, everything is templated and there are no base classes to store prototypes of the instances in a map. We need these such that we are able to offer the user at run-time every choice possible.
  • Hence, we need to encapsulate all engines, distributions and (engine, distribution) tuples: RandomNumber..._Encapsulation classes.
  • each with an abstract base class as the interface: RandomNumber... classes.
  • RandomNumberGeneratorFactory is then a singleton that contains all the Maps and tables:
    • from string (user input is string) to enum (storing enum is more efficient that a lengthy string)
    • from enum to instance (of the abstract class).
  • RandomNumberGeneratorFactory is a singleton to allow for global control of what kind of numbers are generated, hence there are also two new Actions:
  • The user in the end only uses two classes: RandomNumberGeneratorFactory and RandomNumberGenerator. The first only for obtaining a specific variant of the latter and the latter to generate the numbers (operator() is passed on to boost::variate_generator::operator()).
  • There is a unit test on the RandomNumberGeneratorFactory that checks some of the table entries and whether one of the RandomNumberGenerator is working (uniform_smallint so far).

Details:

  • As there are ~25 engines and ~15 distributions this makes an enormous amount of possible combinations. To automatically construct these, we use some stuff from boost::preprocessor in order to generate enums, tables and maps automatically just from a sequence of the typenames.
  • we have be-friended the unit test a lot to allow for easier testing, e.g. we need access to internal ..._type to test whether their type is correct.
  • cleanUp() purges the instance of RandomNumberGeneratorFactory.
  • in RandomNumber..._Encapsulation::name() functions are only used for the unit tests.
  • this all resides in its own subfolder RandomNumbers. So far, it is completely independent of everything else.
  • Property mode set to 100644
File size: 7.2 KB
RevLine 
[18eecf]1# PLEASE adhere to the alphabetical ordering in this Makefile!
2# Also indentation by a single tab
3
[c0bccb]4SUBDIRS = \
[deddf6]5 ../Actions/unittests \
[d766b5]6 ../Descriptors/unittests \
[fff54f]7 ../LinearAlgebra/unittests \
[41396a]8 ../Parser/unittests \
[3f9eba]9 ../RandomNumbers/unittests \
[6d2207]10 ../Shapes/unittests \
[0e2031]11 ../UIElements/Menu/unittests
[c0bccb]12
[b9907c]13INCLUDES = -I$(top_srcdir)/src
14
[a0064e]15AM_LDFLAGS = ${CodePatterns_LIBS} $(CPPUNIT_LIBS) -ldl
16AM_CPPFLAGS = ${BOOST_CPPFLAGS} $(CPPUNIT_CFLAGS) ${CodePatterns_CFLAGS}
[be90f1]17
[9fb860]18TESTS = \
[f844ef]19 AnalysisBondsUnitTest \
[9fb860]20 AnalysisCorrelationToPointUnitTest \
21 AnalysisCorrelationToSurfaceUnitTest \
22 AnalysisPairCorrelationUnitTest \
23 BondGraphUnitTest \
[f844ef]24 BoxUnitTest \
[dfe8ef]25 CountBondsUnitTest \
[9f632c]26 FormulaUnittest \
[dcea0f]27 LinkedCellUnitTest \
[9fb860]28 ListOfBondsUnitTest \
[f844ef]29 PeriodentafelUnitTest \
[b4cf2b]30 SubspaceFactorizerUnitTest \
[9fb860]31 TesselationUnitTest \
[e9c677]32 Tesselation_BoundaryTriangleUnitTest \
[dfafe7]33 Tesselation_InOutsideUnitTest
[4fbca9c]34
35
[63c1f6]36check_PROGRAMS = $(TESTS)
[9b6b2f]37noinst_PROGRAMS = $(TESTS) TestRunner
[b9907c]38
[d5240d]39BOOST_LIB = $(BOOST_LDFLAGS) $(BOOST_MPL_LIB) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_FILESYSTEM_LIB) $(BOOST_SYSTEM_LIB) $(BOOST_THREAD_LIB)
[952f38]40GSLLIBS = \
[6d2207]41 ../Shapes/libMolecuilderShapes.la \
[acbe1b]42 ../LinearAlgebra/libMolecuilderLinearAlgebra.la \
43 ../Exceptions/libMolecuilderExceptions.la \
[e4decc]44 $(BOOST_LIB)
[f4b5b7]45ALLLIBS = \
[acbe1b]46 ../UIElements/libMolecuilderUI.la \
47 ../Actions/libMolecuilderActions.la \
[952f38]48 ${PARSERLIBS} \
[acbe1b]49 ../libMolecuilder.la \
[e4decc]50 ${GSLLIBS}
51
[acbe1b]52PARSERLIBS = ../Parser/libMolecuilderParser.la
53UILIBS = ../UIElements/libMolecuilderUI.la
[4d9c01]54
[9b6b2f]55TESTSOURCES = \
[deddf6]56 ../Actions/unittests/ActionRegistryUnitTest.cpp \
[f7c0c4]57 ../Actions/unittests/ActionSequenceUnitTest.cpp \
[f844ef]58 AnalysisBondsUnitTest.cpp \
[9b6b2f]59 AnalysisCorrelationToPointUnitTest.cpp \
60 AnalysisCorrelationToSurfaceUnitTest.cpp \
61 AnalysisPairCorrelationUnitTest.cpp \
[d766b5]62 ../Descriptors/unittests/AtomDescriptorUnitTest.cpp \
[3c8e8b]63 ../Actions/unittests/AtomsCalculationUnitTest.cpp \
[f844ef]64 BondGraphUnitTest.cpp \
65 BoxUnitTest.cpp \
[5f612ee]66 CountBondsUnitTest.cpp \
[f844ef]67 FormulaUnitTest.cpp \
[78b593]68 ../LinearAlgebra/unittests/LinearSystemOfEquationsUnitTest.cpp \
[f89024]69 ../LinearAlgebra/unittests/LineUnitTest.cpp \
[5f612ee]70 LinkedCellUnitTest.cpp \
[f844ef]71 ListOfBondsUnitTest.cpp \
[efd61b]72 ../Actions/unittests/ManipulateAtomsUnitTest.cpp \
[fff54f]73 ../LinearAlgebra/unittests/MatrixContentSymmetricUnitTest.cpp \
74 ../LinearAlgebra/unittests/MatrixContentUnitTest.cpp \
75 ../LinearAlgebra/unittests/MatrixUnitTest.cpp \
[0e2031]76 ../UIElements/Menu/unittests/MenuDescriptionUnitTest.cpp \
[6c9adc]77 ../Descriptors/unittests/MoleculeDescriptorUnitTest.cpp \
[41396a]78 ../Parser/unittests/ParserCommonUnitTest.cpp \
79 ../Parser/unittests/ParserTremoloUnitTest.cpp \
[f844ef]80 PeriodentafelUnitTest.cpp \
[5bc8229]81 ../LinearAlgebra/unittests/PlaneUnitTest.cpp \
[0b3cbdf]82 ../Shapes/unittests/ShapeUnitTest.cpp \
[f844ef]83 TesselationUnitTest.cpp \
84 Tesselation_BoundaryTriangleUnitTest.cpp \
85 Tesselation_InsideOutsideUnitTest.cpp \
[dfafe7]86 ../LinearAlgebra/unittests/VectorContentUnitTest.cpp \
87 ../LinearAlgebra/unittests/VectorUnitTest.cpp
[9b6b2f]88
89TESTHEADERS = \
[deddf6]90 ../Actions/unittests/ActionRegistryUnitTest.hpp \
[f7c0c4]91 ../Actions/unittests/ActionSequenceUnitTest.hpp \
[f844ef]92 AnalysisBondsUnitTest.hpp \
[5f612ee]93 AnalysisCorrelationToPointUnitTest.hpp \
94 AnalysisCorrelationToSurfaceUnitTest.hpp \
95 AnalysisPairCorrelationUnitTest.hpp \
[d766b5]96 ../Descriptors/unittests/AtomDescriptorUnitTest.hpp \
[3c8e8b]97 ../Actions/unittests/AtomsCalculationUnitTest.hpp \
[f844ef]98 BondGraphUnitTest.hpp \
99 BoxUnitTest.hpp \
[5f612ee]100 CountBondsUnitTest.hpp \
[f844ef]101 FormulaUnitTest.hpp \
[78b593]102 ../LinearAlgebra/unittests/LinearSystemOfEquationsUnitTest.hpp \
[f89024]103 ../LinearAlgebra/unittests/LineUnitTest.hpp \
[5f612ee]104 LinkedCellUnitTest.hpp \
[f844ef]105 ListOfBondsUnitTest.hpp \
[efd61b]106 ../Actions/unittests/ManipulateAtomsUnitTest.hpp \
[fff54f]107 ../LinearAlgebra/unittests/MatrixContentSymmetricUnitTest.hpp \
108 ../LinearAlgebra/unittests/MatrixContentUnitTest.hpp \
109 ../LinearAlgebra/unittests/MatrixUnitTest.hpp \
[0e2031]110 ../UIElements/Menu/unittests/MenuDescriptionUnitTest.hpp \
[6c9adc]111 ../Descriptors/unittests/MoleculeDescriptorUnitTest.hpp \
[41396a]112 ../Parser/unittests/ParserCommonUnitTest.hpp \
113 ../Parser/unittests/ParserTremoloUnitTest.hpp \
[f844ef]114 PeriodentafelUnitTest.hpp \
[5bc8229]115 ../LinearAlgebra/unittests/PlaneUnitTest.hpp \
[0b3cbdf]116 ../Shapes/unittests/ShapeUnitTest.hpp \
[f844ef]117 TesselationUnitTest.hpp \
118 Tesselation_BoundaryTriangleUnitTest.hpp \
119 Tesselation_InsideOutsideUnitTest.hpp \
[dfafe7]120 ../LinearAlgebra/unittests/VectorContentUnitTest.hpp \
121 ../LinearAlgebra/unittests/VectorUnitTest.hpp
[9fb860]122
[9b6b2f]123
[f844ef]124AnalysisBondsUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
125 AnalysisBondsUnitTest.cpp \
126 AnalysisBondsUnitTest.hpp
127AnalysisBondsUnitTest_LDADD = ${ALLLIBS}
[96c961]128
[f844ef]129AnalysisCorrelationToPointUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
130 analysis_correlation.hpp \
131 AnalysisCorrelationToPointUnitTest.cpp \
132 AnalysisCorrelationToPointUnitTest.hpp
[4d9c01]133AnalysisCorrelationToPointUnitTest_LDADD = ${ALLLIBS}
[c4d4df]134
[f844ef]135AnalysisCorrelationToSurfaceUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
136 analysis_correlation.hpp \
137 AnalysisCorrelationToSurfaceUnitTest.cpp \
138 AnalysisCorrelationToSurfaceUnitTest.hpp
[4d9c01]139AnalysisCorrelationToSurfaceUnitTest_LDADD = ${ALLLIBS}
[c4d4df]140
[f844ef]141AnalysisPairCorrelationUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
142 analysis_correlation.hpp \
143 AnalysisPairCorrelationUnitTest.cpp \
144 AnalysisPairCorrelationUnitTest.hpp
[4d9c01]145AnalysisPairCorrelationUnitTest_LDADD = ${ALLLIBS}
[c111db]146
[f844ef]147BondGraphUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
148 BondGraphUnitTest.cpp \
149 BondGraphUnitTest.hpp
[4d9c01]150BondGraphUnitTest_LDADD = ${ALLLIBS}
[46ea3b]151
[f844ef]152BoxUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
153 BoxUnitTest.cpp \
154 BoxUnitTest.hpp
155BoxUnitTest_LDADD = ${ALLLIBS}
[77bc4f]156
[f844ef]157CountBondsUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
158 CountBondsUnitTest.cpp \
159 CountBondsUnitTest.hpp
[5f612ee]160CountBondsUnitTest_LDADD = ${ALLLIBS}
161
[f844ef]162FormulaUnittest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
163 FormulaUnitTest.cpp \
164 FormulaUnitTest.hpp
[9f632c]165FormulaUnittest_LDADD = ${ALLLIBS}
166
[f844ef]167LinkedCellUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
168 LinkedCellUnitTest.cpp \
169 LinkedCellUnitTest.hpp
[5f612ee]170LinkedCellUnitTest_LDADD = ${ALLLIBS}
[46ea3b]171
[f844ef]172ListOfBondsUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
173 ListOfBondsUnitTest.cpp \
174 ListOfBondsUnitTest.hpp
[4d9c01]175ListOfBondsUnitTest_LDADD = ${ALLLIBS}
[266237]176
[f844ef]177PeriodentafelUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
178 PeriodentafelUnitTest.cpp \
179 PeriodentafelUnitTest.hpp
180PeriodentafelUnitTest_LDADD = ${ALLLIBS}
[4eb4fe]181
[f844ef]182SubspaceFactorizerUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
183 SubspaceFactorizerUnitTest.cpp \
184 SubspaceFactorizerUnitTest.hpp
[5eec98]185SubspaceFactorizerUnitTest_LDADD = ${GSLLIBS}
[b4cf2b]186
[f844ef]187TesselationUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
188 TesselationUnitTest.cpp \
189 TesselationUnitTest.hpp
[4d9c01]190TesselationUnitTest_LDADD = ${ALLLIBS}
[c15ca2]191
[f844ef]192Tesselation_BoundaryTriangleUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
193 Tesselation_BoundaryTriangleUnitTest.cpp \
194 Tesselation_BoundaryTriangleUnitTest.hpp
[4d9c01]195Tesselation_BoundaryTriangleUnitTest_LDADD = ${ALLLIBS}
[e9c677]196
[f844ef]197Tesselation_InOutsideUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
198 Tesselation_InsideOutsideUnitTest.cpp \
199 Tesselation_InsideOutsideUnitTest.hpp
[4d9c01]200Tesselation_InOutsideUnitTest_LDADD = ${ALLLIBS}
[d96277]201
[36166d]202TestRunner_SOURCES = TestRunnerMain.cpp $(TESTSOURCES) $(TESTHEADERS)
[b37436]203TestRunner_LDADD = ${UILIBS} ${ALLLIBS}
[7a1ce5]204
[18eecf]205#AUTOMAKE_OPTIONS = parallel-tests
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