Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
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        EmpiricalPotential_contain_HomologyGraph_documentation
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        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
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        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
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        PdbParser_setsAtomName
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        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
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        SaturateAtoms_singleDegree
        StoppableMakroAction
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        Subpackage_levmar
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        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since 4ed18b was             5f612ee, checked in by Frederik Heber <heber@…>, 16 years ago           | 
        
        
          | 
             
Merge branch 'Analysis_PairCorrelation' into StructureRefactoring 
 
Conflicts: 
 
molecuilder/src/Makefile.am 
molecuilder/src/World.cpp 
molecuilder/src/World.hpp 
molecuilder/src/boundary.cpp 
molecuilder/src/builder.cpp 
molecuilder/src/log.cpp 
molecuilder/src/moleculelist.cpp 
molecuilder/src/periodentafel.cpp 
molecuilder/src/tesselation.cpp 
molecuilder/src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp 
molecuilder/src/unittests/Makefile.am 
molecuilder/src/unittests/bondgraphunittest.cpp 
molecuilder/src/unittests/gslvectorunittest.cpp 
molecuilder/src/unittests/logunittest.cpp 
molecuilder/src/unittests/tesselation_boundarytriangleunittest.hpp 
molecuilder/src/vector.cpp 
molecuilder/tests/Tesselations/defs.in 
 
 
Conflicts have been many and too numerous to listen here, just the few general cases 
 
- new molecule() replaced by World::getInstance().createMolecule()
 - new atom() replaced by World::getInstance().createAtom() where appropriate.
 - Some DoLog()s added interfered with changes to the message produced by Log() << Verbose(.) << ...
 - DoLog() has been erroneously added to TestRunner.cpp as well, there cout is appropriate
 - ...
 
 
Additionally, there was a bug in atom::clone(), sort was set to atom::nr of the atom to clone not of the clone itself. This caused a failure of the fragmentation. 
 
This merge has been fully checked from a clean build directory with subsequent configure,make all install and make check. 
It configures, compiles and runs all test cases and the test suite without errors. 
 
Signed-off-by: Frederik Heber <heber@…> 
 
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            File size:
            1.4 KB
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| Rev | Line |   | 
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| [06c7a3] | 1 | /*
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 | 2 |  * log.cpp
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 | 3 |  *
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 | 4 |  *  Created on: Oct 19, 2009
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 | 5 |  *      Author: metzler
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 | 6 |  */
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 | 7 | 
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 | 8 | #include "logger.hpp"
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| [e138de] | 9 | #include "errorlogger.hpp"
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| [06c7a3] | 10 | 
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 | 11 | /**
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 | 12 |  * Sets verbosity for the error logger and the standard logger.
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 | 13 |  *
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 | 14 |  * \param int verbosity level
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 | 15 |  */
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 | 16 | void setVerbosity(int verbosityLevel) {
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| [aee1a3] | 17 |   logger::getInstance().setVerbosity(verbosityLevel);
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| [06c7a3] | 18 | }
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 | 19 | 
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 | 20 | /**
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 | 21 |  * Prints a log entry.
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 | 22 |  *
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 | 23 |  * \param indentation level of the message to log
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 | 24 |  */
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| [aee1a3] | 25 | class logger& Log() {
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| [06c7a3] | 26 |   return logger::getInstance();
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 | 27 | }
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 | 28 | 
 | 
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| [58ed4a] | 29 | /** Checks verbosity for logger.
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 | 30 |  * Is supposed to be used in construct as this:
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 | 31 |  * DoLog(2) && (Log() << Verbose(2) << "message." << endl);
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 | 32 |  * If DoLog does not return true, the right-hand side is not evaluated and we save some time.
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 | 33 |  * \param verbose verbosity level of this message
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 | 34 |  * \return true - print, false - don't
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 | 35 |  */
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 | 36 | bool DoLog(int verbose) {
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| [5f612ee] | 37 |   return (verbose <= logger::getInstance().verbosity);
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| [58ed4a] | 38 | }
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 | 39 | 
 | 
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 | 40 | /** Checks verbosity for errorlogger.
 | 
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 | 41 |  * Is supposed to be used in construct as this:
 | 
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 | 42 |  * DoLog(2) && (Log() << Verbose(2) << "message." << endl);
 | 
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 | 43 |  * If DoLog does not return true, the right-hand side is not evaluated and we save some time.
 | 
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 | 44 |  * \param verbose verbosity level of this message
 | 
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 | 45 |  * \return true - print, false - don't
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 | 46 |  */
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 | 47 | bool DoeLog(int verbose) {
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| [5f612ee] | 48 |   return (verbose <= errorLogger::getInstance().verbosity);
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| [58ed4a] | 49 | }
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 | 50 | 
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| [06c7a3] | 51 | /**
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 | 52 |  * Prints an error log entry.
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 | 53 |  *
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 | 54 |  * \param indentation level of the message to log
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 | 55 |  */
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| [ed58ad] | 56 | class errorLogger & eLog() {
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| [06c7a3] | 57 |   return errorLogger::getInstance();
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 | 58 | }
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