| 1 | /*
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| 2 | * element.hpp
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| 3 | *
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| 4 | * Created on: Aug 3, 2009
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| 5 | * Author: heber
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| 6 | */
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| 7 |
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| 8 | #ifndef ELEMENT_HPP_
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| 9 | #define ELEMENT_HPP_
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| 10 |
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| 11 | /*********************************************** includes ***********************************/
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| 12 |
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| 13 | // include config.h
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| 14 | #ifdef HAVE_CONFIG_H
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| 15 | #include <config.h>
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| 16 | #endif
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| 17 |
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| 18 | #include <iostream>
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| 19 | #include <string>
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| 20 |
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| 21 | #include "defs.hpp"
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| 22 | #include "types.hpp"
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| 23 |
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| 24 | /********************************************** declarations *******************************/
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| 25 |
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| 26 | /** Chemical element.
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| 27 | * Class incorporates data for a certain chemical element to be referenced from atom class.
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| 28 | */
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| 29 | class element {
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| 30 | public:
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| 31 | double mass; //!< mass in g/mol
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| 32 | double CovalentRadius; //!< covalent radius
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| 33 | double VanDerWaalsRadius; //!< can-der-Waals radius
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| 34 | int Z; //!< atomic number
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| 35 | char name[64]; //!< atom name, i.e. "Hydrogren"
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| 36 | char symbol[3]; //!< short form of the atom, i.e. "H"
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| 37 | char period[8]; //!< period: n quantum number
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| 38 | char group[8]; //!< group: l quantum number
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| 39 | char block[8]; //!< block: l quantum number
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| 40 | element *previous; //!< previous item in list
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| 41 | element *next; //!< next element in list
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| 42 | int *sort; //!< sorc criteria
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| 43 | int No; //!< number of element set on periodentafel::Output()
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| 44 | double Valence; //!< number of valence electrons for this element
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| 45 | int NoValenceOrbitals; //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix()
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| 46 | double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen (for single, double and triple bonds)
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| 47 | double HBondAngle[NDIM]; //!< typical angle for one, two, three bonded hydrogen (in degrees)
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| 48 |
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| 49 | element();
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| 50 | ~element();
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| 51 |
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| 52 | // accessor functions
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| 53 | atomicNumber_t getNumber() const;
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| 54 | std::string getSymbol() const;
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| 55 |
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| 56 | //> print element entries to screen
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| 57 | bool Output(std::ostream * const out) const;
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| 58 | bool Checkout(std::ostream * const out, const int No, const int NoOfAtoms) const;
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| 59 |
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| 60 | private:
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| 61 | };
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| 62 |
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| 63 |
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| 64 | #endif /* ELEMENT_HPP_ */
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