Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | Last change
 on this file since b8b75d was             f66195, checked in by Frederik Heber <heber@…>, 16 years ago | 
        
          | 
forward declarations used to untangle interdependet classes.
 basically, everywhere in header files we removed '#include' lines were only pointer to the respective classes were used and the include line was moved to the implementation file.
as a sidenote, lots of funny errors happened because headers were included via a nesting over three other includes. Now, all should be declared directly as needed, as only very little include lines remain in header files.
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          | 
              
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          | File size:
            1.8 KB | 
      
      
| Line |  | 
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| 1 | /* | 
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| 2 | * element.hpp | 
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| 3 | * | 
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| 4 | *  Created on: Aug 3, 2009 | 
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| 5 | *      Author: heber | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | #ifndef ELEMENT_HPP_ | 
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| 9 | #define ELEMENT_HPP_ | 
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| 10 |  | 
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| 11 | using namespace std; | 
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| 12 |  | 
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| 13 | /*********************************************** includes ***********************************/ | 
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| 14 |  | 
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| 15 | // include config.h | 
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| 16 | #ifdef HAVE_CONFIG_H | 
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| 17 | #include <config.h> | 
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| 18 | #endif | 
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| 19 |  | 
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| 20 | #include <iostream> | 
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| 21 |  | 
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| 22 | #include "defs.hpp" | 
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| 23 |  | 
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| 24 | /********************************************** declarations *******************************/ | 
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| 25 |  | 
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| 26 | /** Chemical element. | 
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| 27 | * Class incorporates data for a certain chemical element to be referenced from atom class. | 
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| 28 | */ | 
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| 29 | class element { | 
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| 30 | public: | 
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| 31 | double mass;    //!< mass in g/mol | 
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| 32 | double CovalentRadius;  //!< covalent radius | 
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| 33 | double VanDerWaalsRadius;  //!< can-der-Waals radius | 
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| 34 | int Z;          //!< atomic number | 
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| 35 | char name[64];  //!< atom name, i.e. "Hydrogren" | 
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| 36 | char symbol[3]; //!< short form of the atom, i.e. "H" | 
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| 37 | char period[8];    //!< period: n quantum number | 
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| 38 | char group[8];    //!< group: l quantum number | 
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| 39 | char block[8];    //!< block: l quantum number | 
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| 40 | element *previous;  //!< previous item in list | 
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| 41 | element *next;  //!< next element in list | 
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| 42 | int *sort;      //!< sorc criteria | 
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| 43 | int No;         //!< number of element set on periodentafel::Output() | 
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| 44 | double Valence;   //!< number of valence electrons for this element | 
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| 45 | int NoValenceOrbitals;  //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix() | 
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| 46 | double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen  (for single, double and triple bonds) | 
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| 47 | double HBondAngle[NDIM];     //!< typical angle for one, two, three bonded hydrogen (in degrees) | 
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| 48 |  | 
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| 49 | element(); | 
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| 50 | ~element(); | 
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| 51 |  | 
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| 52 | //> print element entries to screen | 
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| 53 | bool Output(ofstream *out) const; | 
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| 54 | bool Checkout(ofstream *out, const int No, const int NoOfAtoms) const; | 
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| 55 |  | 
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| 56 | private: | 
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| 57 | }; | 
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| 58 |  | 
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| 59 |  | 
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| 60 | #endif /* ELEMENT_HPP_ */ | 
|---|
       
      
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