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        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
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        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since 0adac1 was             ae959a, checked in by Frederik Heber <heber@…>, 15 years ago           | 
        
        
          | 
             
element::group, period, block converted from char[] to std::string. 
 
- came up as test_all.sh showed strncpy to as undefined reference on -O1.
  
           | 
        
        
          
            
              - 
Property                 mode
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          | 
            File size:
            2.8 KB
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| Rev | Line |   | 
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| [14de469] | 1 | /** \file element.cpp
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 | 2 |  * 
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 | 3 |  * Function implementations for the class element.
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 | 4 |  * 
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 | 5 |  */
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 | 6 | 
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| [bf3817] | 7 | // include config.h
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 | 8 | #ifdef HAVE_CONFIG_H
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 | 9 | #include <config.h>
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 | 10 | #endif
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 | 11 | 
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| [112b09] | 12 | #include "Helpers/MemDebug.hpp"
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 | 13 | 
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| [cd4ccc] | 14 | #include <iomanip>
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 | 15 | #include <fstream>
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 | 16 | 
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 | 17 | #include "element.hpp"
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| [14de469] | 18 | 
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| [ead4e6] | 19 | using namespace std;
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 | 20 | 
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| [14de469] | 21 | /************************************* Functions for class element **********************************/
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 | 22 | 
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 | 23 | /** Constructor of class element.
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 | 24 |  */
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| [d5af3e] | 25 | element::element() :
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 | 26 |   mass(0),
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 | 27 |   CovalentRadius(0),
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 | 28 |   VanDerWaalsRadius(0),
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 | 29 |         Z(-1),
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 | 30 |         Valence(0),
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 | 31 |         NoValenceOrbitals(0)
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 | 32 | {
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| [27c6be] | 33 | };
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| [14de469] | 34 | 
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| [2a76b0] | 35 | element::element(const element &src) :
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 | 36 |   mass(src.mass),
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 | 37 |   CovalentRadius(src.CovalentRadius),
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 | 38 |   VanDerWaalsRadius(src.VanDerWaalsRadius),
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 | 39 |   Z(src.Z),
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 | 40 |   Valence(src.Valence),
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 | 41 |   NoValenceOrbitals(src.NoValenceOrbitals),
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 | 42 |   name(src.name),
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 | 43 |   symbol(src.symbol)
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 | 44 | {
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| [ae959a] | 45 |   period = src.period;
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 | 46 |   group = src.group;
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 | 47 |   block = src.block;
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| [2a76b0] | 48 | }
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 | 49 | 
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| [14de469] | 50 | /** Destructor of class element.
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 | 51 |  */
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 | 52 | element::~element() {};
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 | 53 | 
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| [2a76b0] | 54 | element &element::operator=(const element &src){
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 | 55 |   if(this!=&src){
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 | 56 |     mass=src.mass;
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 | 57 |     CovalentRadius=src.CovalentRadius;
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 | 58 |     VanDerWaalsRadius=src.VanDerWaalsRadius;
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 | 59 |     Z=src.Z;
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 | 60 |     Valence=src.Valence;
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 | 61 |     NoValenceOrbitals=src.NoValenceOrbitals;
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 | 62 |     name=src.name;
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 | 63 |     symbol=src.symbol;
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| [ae959a] | 64 |     period = src.period;
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 | 65 |     group = src.group;
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 | 66 |     block = src.block;
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| [2a76b0] | 67 |   }
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 | 68 |   return *this;
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 | 69 | }
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 | 70 | 
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| [14de469] | 71 | /** Prints element data to \a *out.
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 | 72 |  * \param *out outstream
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 | 73 |  */
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| [ead4e6] | 74 | bool element::Output(ostream * const out) const
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| [14de469] | 75 | { 
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| [042f82] | 76 |   if (out != NULL) {
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 | 77 |     *out << name << "\t" << symbol << "\t" << period << "\t" << group << "\t" << block << "\t" << Z << "\t" << mass << "\t" << CovalentRadius << "\t" << VanDerWaalsRadius << endl;
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 | 78 |     //*out << Z << "\t"  << fixed << setprecision(11) << showpoint << mass << "g/mol\t" << name << "\t" << symbol << "\t" << endl;
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 | 79 |     return true;
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 | 80 |   } else
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 | 81 |     return false;
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| [14de469] | 82 | };
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 | 83 | 
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 | 84 | /** Prints element data to \a *out.
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 | 85 |  * \param *out outstream
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| [042f82] | 86 |  * \param No  cardinal number of element
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| [14de469] | 87 |  * \param NoOfAtoms total number of atom of this element type
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 | 88 |  */
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| [ead4e6] | 89 | bool element::Checkout(ostream * const out, const int Number, const int NoOfAtoms) const
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| [14de469] | 90 | { 
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| [042f82] | 91 |   if (out != NULL) {
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 | 92 |     *out << "Ion_Type" << Number << "\t" << NoOfAtoms << "\t" << Z << "\t1.0\t3\t3\t" << fixed << setprecision(11) << showpoint << mass << "\t" << name << "\t" << symbol <<endl;
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 | 93 |     return true;
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 | 94 |   } else
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 | 95 |     return false;
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| [14de469] | 96 | };
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| [ead4e6] | 97 | 
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 | 98 | atomicNumber_t element::getNumber() const{
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 | 99 |   return Z;
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 | 100 | }
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 | 101 | 
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| [7e3fc94] | 102 | string &element::getSymbol(){
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 | 103 |   return symbol;
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| [ead4e6] | 104 | }
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| [e345e3] | 105 | 
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| [7e3fc94] | 106 | const string &element::getSymbol() const{
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 | 107 |   return symbol;
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| [ff6a10] | 108 | }
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 | 109 | 
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| [7e3fc94] | 110 | std::string &element::getName(){
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 | 111 |   return name;
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| [e345e3] | 112 | }
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 | 113 | 
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| [7e3fc94] | 114 | const std::string &element::getName() const{
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 | 115 |   return name;
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| [ff6a10] | 116 | }
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 | 117 | 
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| [e345e3] | 118 | std::ostream &operator<<(std::ostream &ost,const element &elem){
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 | 119 |   ost << elem.getName() << "(" << elem.getNumber() << ")";
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 | 120 |   return ost;
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 | 121 | }
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