Action_Thermostats
        Add_AtomRandomPerturbation
        Add_SelectAtomByNameAction
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_StructOpt_integration_tests
        AutomationFragmentation_failures
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChemicalSpaceEvaluator
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        Fix_Verbose_Codepatterns
        ForceAnnealing_oldresults
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        GeometryObjects
        Gui_displays_atomic_force_velocity
        IndependentFragmentGrids_IntegrationTest
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        StoppableMakroAction
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        stable
      
      
        
          | Last change
 on this file since 987145 was             caece4, checked in by Frederik Heber <heber@…>, 11 years ago | 
        
          | 
Enhanced documentation significantly.
 went through all of the constructs and updated each.
enhanced documentation ofr Fragmentation::FragmentMolecule().
 | 
        
          | 
              
Property                 mode
 set to                 100644 | 
        
          | File size:
            1.4 KB | 
      
      
| Rev | Line |  | 
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| [750cff] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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|  | 4 | * Copyright (C)  2010 University of Bonn. All rights reserved. | 
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|  | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | /** | 
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|  | 9 | * \file commandline.dox | 
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|  | 10 | * | 
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|  | 11 | * Created on: Oct 31, 2011 | 
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|  | 12 | *    Author: heber | 
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|  | 13 | */ | 
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|  | 14 |  | 
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|  | 15 | /** | 
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| [35a889] | 16 | * \page userinterfaces-commandline Command Line Interface | 
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| [750cff] | 17 | * | 
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|  | 18 | * The command line interface allows for using MoleCuilder within scripts such | 
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|  | 19 | * system with only slightly varying parameters can be built in a straight- | 
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|  | 20 | * forward way. | 
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|  | 21 | * | 
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| [caece4] | 22 | * Commands are parsed via the CommandLineParser which uses boost::program_options | 
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| [750cff] | 23 | * to recognize the given options. ActionRegistry and OptionRegistry are used | 
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| [caece4] | 24 | * to distinguish Option's from Action's. Each option has a specific type and a | 
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|  | 25 | * Validator ascertains that the value associated with this option and of this | 
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|  | 26 | * specific type matches certain criteria. | 
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| [750cff] | 27 | * | 
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|  | 28 | * So far the sequence of the Option's is not really important but for the | 
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|  | 29 | * Action's the ordering counts: first come, first serve. | 
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|  | 30 | * | 
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| [caece4] | 31 | * Undoing is possible from the command-line as well. But is so far only used in | 
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|  | 32 | * the regression test to test its functionality. However, as the ActionHistory, | 
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|  | 33 | * or rather ActionQueue, can be saved as a session, this is useful as in a restored | 
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|  | 34 | * ActionHistory undo would allow for traversing back in this history. | 
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| [750cff] | 35 | * | 
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|  | 36 | * | 
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| [caece4] | 37 | * \date 2014-03-10 | 
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| [750cff] | 38 | * | 
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|  | 39 | */ | 
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