| [949953] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2010 University of Bonn. All rights reserved.
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 | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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 | 8 | /*
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 | 9 |  * cleanUp.cpp
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 | 10 |  *
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 | 11 |  *  Created on: Oct 28, 2011
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 | 12 |  *      Author: heber
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 | 13 |  */
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 | 14 | 
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 | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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 | 20 | #include <iostream>
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 | 21 | #include <iomanip>
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 | 22 | 
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 | 23 | #include "CodePatterns/MemDebug.hpp"
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 | 24 | 
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 | 25 | #include "cleanUp.hpp"
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 | 26 | 
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 | 27 | #include "CodePatterns/Chronos.hpp"
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 | 28 | #include "CodePatterns/errorlogger.hpp"
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 | 29 | #include "CodePatterns/logger.hpp"
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 | 30 | 
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 | 31 | #include "Actions/ActionHistory.hpp"
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 | 32 | #include "Actions/ActionRegistry.hpp"
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 | 33 | #include "Actions/OptionRegistry.hpp"
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 | 34 | #include "Actions/ValueStorage.hpp"
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 | 35 | 
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 | 36 | #include "RandomNumbers/RandomNumberDistributionFactory.hpp"
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 | 37 | #include "RandomNumbers/RandomNumberEngineFactory.hpp"
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 | 38 | #include "RandomNumbers/RandomNumberGeneratorFactory.hpp"
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 | 39 | 
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 | 40 | #include "Parser/ChangeTracker.hpp"
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 | 41 | #include "Parser/FormatParserStorage.hpp"
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 | 42 | 
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 | 43 | #include "UIElements/CommandLineUI/CommandLineParser.hpp"
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 | 44 | #include "UIElements/Menu/MenuDescription.hpp"
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 | 45 | #include "UIElements/UIFactory.hpp"
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 | 46 | #include "World.hpp"
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 | 47 | 
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 | 48 | /** In this function all dynamicly allocated member variables to static/global
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 | 49 |  * variables are added to the ignore list of Memory/MemDebug.
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 | 50 |  *
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 | 51 |  * Use this to prevent their listing in the Memory::getState() at the end of the
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 | 52 |  * program. Check with valgrind that truely no memory leak occurs!
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 | 53 |  */
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 | 54 | void AddStaticEntitiestoIgnoreList()
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 | 55 | {
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 | 56 |   // zeroVec and unitVec are global variables (on the stack) but vectorContent
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 | 57 |   // within is situated on the heap and has to be ignored
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 | 58 |   Memory::ignore(zeroVec.get());
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 | 59 |   Memory::ignore(unitVec[0].get());
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 | 60 |   Memory::ignore(unitVec[1].get());
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 | 61 |   Memory::ignore(unitVec[2].get());
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 | 62 | }
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 | 63 | 
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 | 64 | /** Cleans all singleton instances in an orderly fashion.
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 | 65 |  * C++ does not guarantee any specific sequence of removal of single instances
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 | 66 |  * which have static/global variables. Some singletons depend on others hence we
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 | 67 |  * acertain a specific ordering here, which is is used via the atexit() hook.
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 | 68 |  */
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 | 69 | void cleanUp()
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 | 70 | {
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 | 71 |   printTimings();
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 | 72 |   Chronos::purgeInstance();
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 | 73 | 
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 | 74 |   RandomNumberDistributionFactory::purgeInstance();
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 | 75 |   RandomNumberEngineFactory::purgeInstance();
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 | 76 |   RandomNumberGeneratorFactory::purgeInstance();
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 | 77 |   FormatParserStorage::purgeInstance();
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 | 78 |   ChangeTracker::purgeInstance();
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 | 79 |   World::purgeInstance();
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 | 80 |   MenuDescription::purgeInstance();
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 | 81 |   UIFactory::purgeInstance();
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 | 82 |   ValueStorage::purgeInstance();
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 | 83 |   CommandLineParser::purgeInstance();
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 | 84 |   MoleCuilder::ActionRegistry::purgeInstance();
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 | 85 |   MoleCuilder::OptionRegistry::purgeInstance();
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 | 86 |   MoleCuilder::ActionHistory::purgeInstance();
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 | 87 |   // we have to remove these two static as otherwise their boost::shared_ptrs are still present
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 | 88 |   MoleCuilder::Action::removeStaticStateEntities();
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 | 89 |   // put some static variables' dynamic contents on the Memory::ignore map to avoid their
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 | 90 |   // admonishing lateron
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 | 91 |   AddStaticEntitiestoIgnoreList();
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 | 92 |   logger::purgeInstance();
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 | 93 |   errorLogger::purgeInstance();
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 | 94 | #ifdef LOG_OBSERVER
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 | 95 |   cout << observerLog().getLog();
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 | 96 | #endif
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 | 97 |   Memory::getState();
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 | 98 | }
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 | 99 | 
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 | 100 | /** We give a list of all times per action and a total time.
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 | 101 |  *
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 | 102 |  */
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 | 103 | void printTimings()
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 | 104 | {
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 | 105 |   const MoleCuilder::ActionRegistry &AR = MoleCuilder::ActionRegistry::getInstance();
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 | 106 |   const Chronos &Chron = Chronos::getInstance();
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 | 107 |   std::cout << "(Non-zero) Times used per Action [seconds]:" << std::endl;
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 | 108 |   for (MoleCuilder::ActionRegistry::const_iterator iter = AR.getBeginIter(); iter != AR.getEndIter(); ++iter)
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 | 109 |     if (Chron.getTime(iter->first) != 0.) { // dont give if action has not been used
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 | 110 |       std::cout << "  " << setiosflags(ios::left) << setw(24) << setfill('.') << iter->first;
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 | 111 |       std::cout << setiosflags(ios::left) << setprecision(6) << fixed << Chron.getTime(iter->first) << std::endl;
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 | 112 |     }
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 | 113 |   std::cout << "Total Time: " << Chron.SumUpTotalTime() << " seconds" << std::endl;
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 | 114 |   std::cout << "Total Actions called: " << Chron.SumUpTotalFunctions() << std::endl;
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 | 115 | }
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