| 1 | /* | 
|---|
| 2 | * Project: MoleCuilder | 
|---|
| 3 | * Description: creates and alters molecular systems | 
|---|
| 4 | * Copyright (C)  2010 University of Bonn. All rights reserved. | 
|---|
| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
|---|
| 6 | */ | 
|---|
| 7 |  | 
|---|
| 8 | /* | 
|---|
| 9 | * builder_init.cpp | 
|---|
| 10 | * | 
|---|
| 11 | *  Created on: Dec 15, 2010 | 
|---|
| 12 | *      Author: heber | 
|---|
| 13 | */ | 
|---|
| 14 |  | 
|---|
| 15 | // include config.h | 
|---|
| 16 | #ifdef HAVE_CONFIG_H | 
|---|
| 17 | #include <config.h> | 
|---|
| 18 | #endif | 
|---|
| 19 |  | 
|---|
| 20 | #include "CodePatterns/MemDebug.hpp" | 
|---|
| 21 |  | 
|---|
| 22 | #include <iostream> | 
|---|
| 23 |  | 
|---|
| 24 | #include "Graph/BondGraph.hpp" | 
|---|
| 25 | #include "config.hpp" | 
|---|
| 26 | #include "CodePatterns/Log.hpp" | 
|---|
| 27 | #include "molecule.hpp" | 
|---|
| 28 | #include "periodentafel.hpp" | 
|---|
| 29 | #include "Tesselation/tesselationhelpers.hpp" | 
|---|
| 30 | #include "UIElements/UIFactory.hpp" | 
|---|
| 31 | #include "UIElements/Menu/MenuDescription.hpp" | 
|---|
| 32 | #include "UIElements/TextUI/TextUIFactory.hpp" | 
|---|
| 33 | #include "UIElements/CommandLineUI/CommandLineUIFactory.hpp" | 
|---|
| 34 | #include "UIElements/CommandLineUI/CommandLineParser.hpp" | 
|---|
| 35 | #ifdef USE_GUI_QT | 
|---|
| 36 | #include "UIElements/Qt4/QtUIFactory.hpp" | 
|---|
| 37 | #endif | 
|---|
| 38 | #include "UIElements/MainWindow.hpp" | 
|---|
| 39 | #include "UIElements/Dialog.hpp" | 
|---|
| 40 | //#include "Menu/ActionMenuItem.hpp" | 
|---|
| 41 | #include "CodePatterns/Verbose.hpp" | 
|---|
| 42 | #include "World.hpp" | 
|---|
| 43 |  | 
|---|
| 44 | #include "Actions/ActionExceptions.hpp" | 
|---|
| 45 | #include "Actions/ActionHistory.hpp" | 
|---|
| 46 | #include "Actions/ActionRegistry.hpp" | 
|---|
| 47 |  | 
|---|
| 48 | #include "RandomNumbers/RandomNumberDistributionFactory.hpp" | 
|---|
| 49 | #include "RandomNumbers/RandomNumberEngineFactory.hpp" | 
|---|
| 50 | #include "RandomNumbers/RandomNumberGeneratorFactory.hpp" | 
|---|
| 51 |  | 
|---|
| 52 | #include "Parser/ChangeTracker.hpp" | 
|---|
| 53 | #include "Parser/FormatParserStorage.hpp" | 
|---|
| 54 |  | 
|---|
| 55 | #include "UIElements/UIFactory.hpp" | 
|---|
| 56 | #include "UIElements/TextUI/TextUIFactory.hpp" | 
|---|
| 57 | #include "UIElements/CommandLineUI/CommandLineUIFactory.hpp" | 
|---|
| 58 | #include "UIElements/MainWindow.hpp" | 
|---|
| 59 | #include "UIElements/Dialog.hpp" | 
|---|
| 60 |  | 
|---|
| 61 | #include "version.h" | 
|---|
| 62 |  | 
|---|
| 63 | #include "builder_init.hpp" | 
|---|
| 64 |  | 
|---|
| 65 | /** Print some initial information output the program. | 
|---|
| 66 | * | 
|---|
| 67 | */ | 
|---|
| 68 | void ProgramHeader() | 
|---|
| 69 | { | 
|---|
| 70 | // print version check and copyright notice | 
|---|
| 71 | cout << MOLECUILDERVERSION << endl; | 
|---|
| 72 | cout << "MoleCuilder comes with ABSOLUTELY NO WARRANTY; for details type" << endl; | 
|---|
| 73 | cout << "`molecuilder --warranty'." << endl; | 
|---|
| 74 | cout << "`MoleCuilder - to create and alter molecular systems." << endl; | 
|---|
| 75 | cout << "Copyright (C) 2010  University Bonn. All rights reserved." << endl; | 
|---|
| 76 | cout << endl; | 
|---|
| 77 | } | 
|---|
| 78 |  | 
|---|
| 79 | /** General stuff to intialize before UI. | 
|---|
| 80 | * | 
|---|
| 81 | */ | 
|---|
| 82 | void initGeneral() | 
|---|
| 83 | { | 
|---|
| 84 | // while we are non interactive, we want to abort from asserts | 
|---|
| 85 | ASSERT_DO(Assert::Abort); | 
|---|
| 86 | ASSERT_HOOK(dumpMemory); | 
|---|
| 87 |  | 
|---|
| 88 | ProgramHeader(); | 
|---|
| 89 |  | 
|---|
| 90 | setVerbosity(1); | 
|---|
| 91 | // need to init the history before any action is created | 
|---|
| 92 | MoleCuilder::ActionHistory::init(); | 
|---|
| 93 |  | 
|---|
| 94 | // from this moment on, we need to be sure to deeinitialize in the correct order | 
|---|
| 95 | // this is handled by the cleanup function | 
|---|
| 96 | atexit(cleanUp); | 
|---|
| 97 | } | 
|---|
| 98 |  | 
|---|
| 99 | /** Initialize specific UIFactory. | 
|---|
| 100 | * | 
|---|
| 101 | * @param argc argument count | 
|---|
| 102 | * @param argv argument array | 
|---|
| 103 | */ | 
|---|
| 104 | void initUI(int argc, char **argv) | 
|---|
| 105 | { | 
|---|
| 106 | std::string BondGraphFileName("\n"); | 
|---|
| 107 | // Parse command line options and if present create respective UI | 
|---|
| 108 | // construct bond graph | 
|---|
| 109 | if (boost::filesystem::exists(BondGraphFileName)) { | 
|---|
| 110 | std::ifstream input(BondGraphFileName.c_str()); | 
|---|
| 111 | if ((input.good()) && (World::getInstance().getBondGraph()->LoadBondLengthTable(input))) { | 
|---|
| 112 | DoLog(0) && (Log() << Verbose(0) << "Bond length table loaded successfully." << endl); | 
|---|
| 113 | } else { | 
|---|
| 114 | DoeLog(1) && (eLog()<< Verbose(1) << "Bond length table loading failed." << endl); | 
|---|
| 115 | } | 
|---|
| 116 | input.close(); | 
|---|
| 117 | } | 
|---|
| 118 | // handle remaining arguments by CommandLineParser | 
|---|
| 119 | if (argc>1) { | 
|---|
| 120 | DoLog(0) && (Log() << Verbose(0) << "Setting UI to CommandLine." << endl); | 
|---|
| 121 | CommandLineParser::getInstance().InitializeCommandArguments(); | 
|---|
| 122 | CommandLineParser::getInstance().Run(argc,argv); | 
|---|
| 123 | UIFactory::registerFactory(new CommandLineUIFactory::description()); | 
|---|
| 124 | UIFactory::makeUserInterface("CommandLine"); | 
|---|
| 125 | } else { | 
|---|
| 126 | // In the interactive mode, we can leave the user the choice in case of error | 
|---|
| 127 | ASSERT_DO(Assert::Ask); | 
|---|
| 128 | #ifdef USE_GUI_QT | 
|---|
| 129 | DoLog(0) && (Log() << Verbose(0) << "Setting UI to Qt4." << endl); | 
|---|
| 130 | UIFactory::registerFactory(new QtUIFactory::description()); | 
|---|
| 131 | UIFactory::makeUserInterface("Qt4"); | 
|---|
| 132 | #else | 
|---|
| 133 | DoLog(0) && (Log() << Verbose(0) << "Setting UI to Text." << endl); | 
|---|
| 134 | cout << MOLECUILDERVERSION << endl; | 
|---|
| 135 | UIFactory::registerFactory(new TextUIFactory::description()); | 
|---|
| 136 | UIFactory::makeUserInterface("Text"); | 
|---|
| 137 | #endif | 
|---|
| 138 | } | 
|---|
| 139 | } | 
|---|
| 140 |  | 
|---|
| 141 | /** Create MainWindow and displays. | 
|---|
| 142 | * I.e. here all the Actions are parsed and done. | 
|---|
| 143 | */ | 
|---|
| 144 | void doUI() | 
|---|
| 145 | { | 
|---|
| 146 | MainWindow *mainWindow = UIFactory::getInstance().makeMainWindow(); | 
|---|
| 147 | try { | 
|---|
| 148 | mainWindow->display(); | 
|---|
| 149 | } catch(ActionFailureException &e) { | 
|---|
| 150 | std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl; | 
|---|
| 151 | World::getInstance().setExitFlag(5); | 
|---|
| 152 | } | 
|---|
| 153 | delete mainWindow; | 
|---|
| 154 | } | 
|---|
| 155 |  | 
|---|
| 156 |  | 
|---|
| 157 | /** In this function all dynamicly allocated member variables to static/global | 
|---|
| 158 | * variables are added to the ignore list of Memory/MemDebug. | 
|---|
| 159 | * | 
|---|
| 160 | * Use this to prevent their listing in the Memory::getState() at the end of the | 
|---|
| 161 | * program. Check with valgrind that truely no memory leak occurs! | 
|---|
| 162 | */ | 
|---|
| 163 | void AddStaticEntitiestoIgnoreList() | 
|---|
| 164 | { | 
|---|
| 165 | // zeroVec and unitVec are global variables (on the stack) but vectorContent | 
|---|
| 166 | // within is situated on the heap and has to be ignored | 
|---|
| 167 | Memory::ignore(zeroVec.get()); | 
|---|
| 168 | Memory::ignore(unitVec[0].get()); | 
|---|
| 169 | Memory::ignore(unitVec[1].get()); | 
|---|
| 170 | Memory::ignore(unitVec[2].get()); | 
|---|
| 171 | } | 
|---|
| 172 |  | 
|---|
| 173 | /** Cleans all singleton instances in an orderly fashion. | 
|---|
| 174 | * C++ does not guarantee any specific sequence of removal of single instances | 
|---|
| 175 | * which have static/global variables. Some singletons depend on others hence we | 
|---|
| 176 | * acertain a specific ordering here, which is is used via the atexit() hook. | 
|---|
| 177 | */ | 
|---|
| 178 | void cleanUp() | 
|---|
| 179 | { | 
|---|
| 180 | RandomNumberDistributionFactory::purgeInstance(); | 
|---|
| 181 | RandomNumberEngineFactory::purgeInstance(); | 
|---|
| 182 | RandomNumberGeneratorFactory::purgeInstance(); | 
|---|
| 183 | FormatParserStorage::purgeInstance(); | 
|---|
| 184 | ChangeTracker::purgeInstance(); | 
|---|
| 185 | World::purgeInstance(); | 
|---|
| 186 | MenuDescription::purgeInstance(); | 
|---|
| 187 | UIFactory::purgeInstance(); | 
|---|
| 188 | ValueStorage::purgeInstance(); | 
|---|
| 189 | CommandLineParser::purgeInstance(); | 
|---|
| 190 | MoleCuilder::ActionRegistry::purgeInstance(); | 
|---|
| 191 | MoleCuilder::OptionRegistry::purgeInstance(); | 
|---|
| 192 | MoleCuilder::ActionHistory::purgeInstance(); | 
|---|
| 193 | // we have to remove these two static as otherwise their boost::shared_ptrs are still present | 
|---|
| 194 | MoleCuilder::Action::removeStaticStateEntities(); | 
|---|
| 195 | // put some static variables' dynamic contents on the Memory::ignore map to avoid their | 
|---|
| 196 | // admonishing lateron | 
|---|
| 197 | AddStaticEntitiestoIgnoreList(); | 
|---|
| 198 | logger::purgeInstance(); | 
|---|
| 199 | errorLogger::purgeInstance(); | 
|---|
| 200 | #ifdef LOG_OBSERVER | 
|---|
| 201 | cout << observerLog().getLog(); | 
|---|
| 202 | #endif | 
|---|
| 203 | Memory::getState(); | 
|---|
| 204 | } | 
|---|
| 205 |  | 
|---|
| 206 | /** Dump current memory chunks. | 
|---|
| 207 | * | 
|---|
| 208 | */ | 
|---|
| 209 | void dumpMemory() | 
|---|
| 210 | { | 
|---|
| 211 | ofstream ost("molecuilder.memdump"); | 
|---|
| 212 | Memory::dumpMemory(ost); | 
|---|
| 213 | } | 
|---|
| 214 |  | 
|---|
| 215 | /** Save the current World to output files and exit. | 
|---|
| 216 | * | 
|---|
| 217 | * @return retrieved from World::getExitFlag() | 
|---|
| 218 | */ | 
|---|
| 219 | int saveAll() | 
|---|
| 220 | { | 
|---|
| 221 | FormatParserStorage::getInstance().SaveAll(); | 
|---|
| 222 | ChangeTracker::getInstance().saveStatus(); | 
|---|
| 223 |  | 
|---|
| 224 | int ExitFlag = World::getInstance().getExitFlag(); | 
|---|
| 225 | return (ExitFlag == 1 ? 0 : ExitFlag); | 
|---|
| 226 | } | 
|---|