| [f4d063] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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|  | 4 | * Copyright (C)  2010 University of Bonn. All rights reserved. | 
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|  | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | /* | 
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|  | 9 | * builder_init.cpp | 
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|  | 10 | * | 
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|  | 11 | *  Created on: Dec 15, 2010 | 
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|  | 12 | *      Author: heber | 
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|  | 13 | */ | 
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|  | 14 |  | 
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|  | 15 | // include config.h | 
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|  | 16 | #ifdef HAVE_CONFIG_H | 
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|  | 17 | #include <config.h> | 
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|  | 18 | #endif | 
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|  | 19 |  | 
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp" | 
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| [f4d063] | 21 |  | 
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| [4e855e] | 22 | #include <iostream> | 
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|  | 23 |  | 
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| [f4d063] | 24 | #include "bondgraph.hpp" | 
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|  | 25 | #include "config.hpp" | 
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| [ad011c] | 26 | #include "CodePatterns/Log.hpp" | 
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| [f4d063] | 27 | #include "molecule.hpp" | 
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|  | 28 | #include "periodentafel.hpp" | 
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|  | 29 | #include "tesselationhelpers.hpp" | 
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|  | 30 | #include "UIElements/UIFactory.hpp" | 
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|  | 31 | #include "UIElements/Menu/MenuDescription.hpp" | 
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|  | 32 | #include "UIElements/TextUI/TextUIFactory.hpp" | 
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|  | 33 | #include "UIElements/CommandLineUI/CommandLineUIFactory.hpp" | 
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|  | 34 | #include "UIElements/CommandLineUI/CommandLineParser.hpp" | 
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|  | 35 | #ifdef USE_GUI_QT | 
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|  | 36 | #include "UIElements/Qt4/QtUIFactory.hpp" | 
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|  | 37 | #endif | 
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|  | 38 | #include "UIElements/MainWindow.hpp" | 
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|  | 39 | #include "UIElements/Dialog.hpp" | 
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|  | 40 | //#include "Menu/ActionMenuItem.hpp" | 
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| [ad011c] | 41 | #include "CodePatterns/Verbose.hpp" | 
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| [f4d063] | 42 | #include "World.hpp" | 
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|  | 43 |  | 
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|  | 44 | #include "Actions/ActionRegistry.hpp" | 
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|  | 45 | #include "Actions/ActionHistory.hpp" | 
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|  | 46 |  | 
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| [1d5a871] | 47 | #include "RandomNumbers/RandomNumberDistributionFactory.hpp" | 
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|  | 48 | #include "RandomNumbers/RandomNumberEngineFactory.hpp" | 
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| [3f9eba] | 49 | #include "RandomNumbers/RandomNumberGeneratorFactory.hpp" | 
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|  | 50 |  | 
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| [f4d063] | 51 | #include "Parser/ChangeTracker.hpp" | 
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|  | 52 | #include "Parser/FormatParserStorage.hpp" | 
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|  | 53 |  | 
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|  | 54 | #include "UIElements/UIFactory.hpp" | 
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|  | 55 | #include "UIElements/TextUI/TextUIFactory.hpp" | 
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|  | 56 | #include "UIElements/CommandLineUI/CommandLineUIFactory.hpp" | 
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|  | 57 | #include "UIElements/MainWindow.hpp" | 
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|  | 58 | #include "UIElements/Dialog.hpp" | 
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|  | 59 |  | 
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|  | 60 | #include "version.h" | 
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|  | 61 |  | 
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|  | 62 | #include "builder_init.hpp" | 
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|  | 63 |  | 
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|  | 64 | /** Print some initial information output the program. | 
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|  | 65 | * | 
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|  | 66 | */ | 
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|  | 67 | void ProgramHeader() | 
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|  | 68 | { | 
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|  | 69 | // print version check and copyright notice | 
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|  | 70 | cout << MOLECUILDERVERSION << endl; | 
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|  | 71 | cout << "MoleCuilder comes with ABSOLUTELY NO WARRANTY; for details type" << endl; | 
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|  | 72 | cout << "`molecuilder --warranty'." << endl; | 
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|  | 73 | cout << "`MoleCuilder - to create and alter molecular systems." << endl; | 
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|  | 74 | cout << "Copyright (C) 2010  University Bonn. All rights reserved." << endl; | 
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| [ad7270] | 75 | cout << endl; | 
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| [f4d063] | 76 | } | 
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|  | 77 |  | 
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|  | 78 | /** General stuff to intialize before UI. | 
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|  | 79 | * | 
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|  | 80 | */ | 
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|  | 81 | void initGeneral() | 
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|  | 82 | { | 
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|  | 83 | // while we are non interactive, we want to abort from asserts | 
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|  | 84 | ASSERT_DO(Assert::Abort); | 
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|  | 85 | ASSERT_HOOK(dumpMemory); | 
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|  | 86 |  | 
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|  | 87 | ProgramHeader(); | 
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|  | 88 |  | 
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| [ad7270] | 89 | setVerbosity(1); | 
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| [f4d063] | 90 | // need to init the history before any action is created | 
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|  | 91 | ActionHistory::init(); | 
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|  | 92 |  | 
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|  | 93 | // from this moment on, we need to be sure to deeinitialize in the correct order | 
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|  | 94 | // this is handled by the cleanup function | 
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|  | 95 | atexit(cleanUp); | 
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|  | 96 | } | 
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|  | 97 |  | 
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|  | 98 | /** Initialize specific UIFactory. | 
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|  | 99 | * | 
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|  | 100 | * @param argc argument count | 
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|  | 101 | * @param argv argument array | 
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|  | 102 | */ | 
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|  | 103 | void initUI(int argc, char **argv) | 
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|  | 104 | { | 
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|  | 105 | std::string BondGraphFileName("\n"); | 
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|  | 106 | // Parse command line options and if present create respective UI | 
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|  | 107 | // construct bond graph | 
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|  | 108 | if (World::getInstance().getConfig()->BG == NULL) { | 
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|  | 109 | World::getInstance().getConfig()->BG = new BondGraph(World::getInstance().getConfig()->GetIsAngstroem()); | 
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| [ad7270] | 110 | if (boost::filesystem::exists(BondGraphFileName)) { | 
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| [4e855e] | 111 | std::ifstream input(BondGraphFileName.c_str()); | 
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|  | 112 | if ((input.good()) && (World::getInstance().getConfig()->BG->LoadBondLengthTable(input))) { | 
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| [ad7270] | 113 | DoLog(0) && (Log() << Verbose(0) << "Bond length table loaded successfully." << endl); | 
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|  | 114 | } else { | 
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|  | 115 | DoeLog(1) && (eLog()<< Verbose(1) << "Bond length table loading failed." << endl); | 
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|  | 116 | } | 
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| [4e855e] | 117 | input.close(); | 
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| [f4d063] | 118 | } | 
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|  | 119 | } | 
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|  | 120 | // handle remaining arguments by CommandLineParser | 
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|  | 121 | if (argc>1) { | 
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| [ad7270] | 122 | DoLog(0) && (Log() << Verbose(0) << "Setting UI to CommandLine." << endl); | 
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| [f4d063] | 123 | CommandLineParser::getInstance().InitializeCommandArguments(); | 
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|  | 124 | CommandLineParser::getInstance().Run(argc,argv); | 
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|  | 125 | UIFactory::registerFactory(new CommandLineUIFactory::description()); | 
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|  | 126 | UIFactory::makeUserInterface("CommandLine"); | 
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|  | 127 | } else { | 
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|  | 128 | // In the interactive mode, we can leave the user the choice in case of error | 
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|  | 129 | ASSERT_DO(Assert::Ask); | 
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|  | 130 | #ifdef USE_GUI_QT | 
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|  | 131 | DoLog(0) && (Log() << Verbose(0) << "Setting UI to Qt4." << endl); | 
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|  | 132 | UIFactory::registerFactory(new QtUIFactory::description()); | 
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|  | 133 | UIFactory::makeUserInterface("Qt4"); | 
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|  | 134 | #else | 
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|  | 135 | DoLog(0) && (Log() << Verbose(0) << "Setting UI to Text." << endl); | 
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|  | 136 | cout << MOLECUILDERVERSION << endl; | 
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|  | 137 | UIFactory::registerFactory(new TextUIFactory::description()); | 
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|  | 138 | UIFactory::makeUserInterface("Text"); | 
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|  | 139 | #endif | 
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|  | 140 | } | 
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|  | 141 | } | 
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|  | 142 |  | 
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|  | 143 | /** Create MainWindow and displays. | 
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|  | 144 | * I.e. here all the Actions are parsed and done. | 
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|  | 145 | */ | 
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|  | 146 | void doUI() | 
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|  | 147 | { | 
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|  | 148 | MainWindow *mainWindow = UIFactory::getInstance().makeMainWindow(); | 
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|  | 149 | mainWindow->display(); | 
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|  | 150 | delete mainWindow; | 
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|  | 151 | } | 
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|  | 152 |  | 
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|  | 153 |  | 
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|  | 154 | /** In this function all dynamicly allocated member variables to static/global | 
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|  | 155 | * variables are added to the ignore list of Memory/MemDebug. | 
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|  | 156 | * | 
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|  | 157 | * Use this to prevent their listing in the Memory::getState() at the end of the | 
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|  | 158 | * program. Check with valgrind that truely no memory leak occurs! | 
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|  | 159 | */ | 
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|  | 160 | void AddStaticEntitiestoIgnoreList() | 
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|  | 161 | { | 
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|  | 162 | // zeroVec and unitVec are global variables (on the stack) but vectorContent | 
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|  | 163 | // within is situated on the heap and has to be ignored | 
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|  | 164 | Memory::ignore(zeroVec.get()); | 
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|  | 165 | Memory::ignore(unitVec[0].get()); | 
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|  | 166 | Memory::ignore(unitVec[1].get()); | 
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|  | 167 | Memory::ignore(unitVec[2].get()); | 
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|  | 168 | } | 
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|  | 169 |  | 
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|  | 170 | /** Cleans all singleton instances in an orderly fashion. | 
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|  | 171 | * C++ does not guarantee any specific sequence of removal of single instances | 
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|  | 172 | * which have static/global variables. Some singletons depend on others hence we | 
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|  | 173 | * acertain a specific ordering here, which is is used via the atexit() hook. | 
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|  | 174 | */ | 
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|  | 175 | void cleanUp() | 
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|  | 176 | { | 
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| [c9bc2b7] | 177 | RandomNumberDistributionFactory::purgeInstance(); | 
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|  | 178 | RandomNumberEngineFactory::purgeInstance(); | 
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| [3f9eba] | 179 | RandomNumberGeneratorFactory::purgeInstance(); | 
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| [f4d063] | 180 | FormatParserStorage::purgeInstance(); | 
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|  | 181 | ChangeTracker::purgeInstance(); | 
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|  | 182 | World::purgeInstance(); | 
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|  | 183 | MenuDescription::purgeInstance(); | 
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|  | 184 | UIFactory::purgeInstance(); | 
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|  | 185 | ValueStorage::purgeInstance(); | 
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|  | 186 | CommandLineParser::purgeInstance(); | 
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|  | 187 | ActionRegistry::purgeInstance(); | 
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|  | 188 | OptionRegistry::purgeInstance(); | 
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|  | 189 | ActionHistory::purgeInstance(); | 
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|  | 190 | // we have to remove these two static as otherwise their boost::shared_ptrs are still present | 
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|  | 191 | Action::removeStaticStateEntities(); | 
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|  | 192 | // put some static variables' dynamic contents on the Memory::ignore map to avoid their | 
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|  | 193 | // admonishing lateron | 
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|  | 194 | AddStaticEntitiestoIgnoreList(); | 
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|  | 195 | logger::purgeInstance(); | 
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|  | 196 | errorLogger::purgeInstance(); | 
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|  | 197 | #ifdef LOG_OBSERVER | 
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|  | 198 | cout << observerLog().getLog(); | 
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|  | 199 | #endif | 
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|  | 200 | Memory::getState(); | 
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|  | 201 | } | 
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|  | 202 |  | 
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|  | 203 | /** Dump current memory chunks. | 
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|  | 204 | * | 
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|  | 205 | */ | 
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|  | 206 | void dumpMemory() | 
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|  | 207 | { | 
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|  | 208 | ofstream ost("molecuilder.memdump"); | 
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|  | 209 | Memory::dumpMemory(ost); | 
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|  | 210 | } | 
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|  | 211 |  | 
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|  | 212 | /** Save the current World to output files and exit. | 
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|  | 213 | * | 
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|  | 214 | * @return retrieved from World::getExitFlag() | 
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|  | 215 | */ | 
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|  | 216 | int saveAll() | 
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|  | 217 | { | 
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|  | 218 | int test[500000]; | 
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|  | 219 | for (size_t i=0;i<500000;++i) { | 
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|  | 220 | test[i] = (int)i; | 
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|  | 221 | } | 
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|  | 222 | FormatParserStorage::getInstance().SaveAll(); | 
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|  | 223 | ChangeTracker::getInstance().saveStatus(); | 
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|  | 224 |  | 
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|  | 225 | int ExitFlag = World::getInstance().getExitFlag(); | 
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|  | 226 | return (ExitFlag == 1 ? 0 : ExitFlag); | 
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|  | 227 | } | 
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