| 1 | #ifndef BOUNDARY_HPP_ | 
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| 2 | #define BOUNDARY_HPP_ | 
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| 3 |  | 
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| 4 | class BoundaryPointSet; | 
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| 5 | class BoundaryLineSet; | 
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| 6 | class BoundaryTriangleSet; | 
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| 7 |  | 
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| 8 | // include config.h | 
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| 9 | #ifdef HAVE_CONFIG_H | 
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| 10 | #include <config.h> | 
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| 11 | #endif | 
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| 12 |  | 
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| 13 | // STL headers | 
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| 14 | #include <map> | 
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| 15 | #include <set> | 
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| 16 | #include <deque> | 
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| 17 |  | 
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| 18 | #include <gsl/gsl_poly.h> | 
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| 19 |  | 
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| 20 | #include "molecules.hpp" | 
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| 21 |  | 
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| 22 | #define DistanceNrPair pair < double, atom* > | 
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| 23 | #define DistanceMap multimap < double, atom* > | 
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| 24 | #define DistanceTestPair pair < DistanceMap::iterator, bool> | 
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| 25 |  | 
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| 26 | #define Boundaries map <double, DistanceNrPair > | 
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| 27 | #define BoundariesPair pair<double, DistanceNrPair > | 
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| 28 | #define BoundariesTestPair pair< Boundaries::iterator, bool> | 
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| 29 |  | 
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| 30 | #define PointMap map < int, class BoundaryPointSet * > | 
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| 31 | #define PointPair pair < int, class BoundaryPointSet * > | 
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| 32 | #define PointTestPair pair < PointMap::iterator, bool > | 
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| 33 |  | 
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| 34 | #define LineMap map < int, class BoundaryLineSet * > | 
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| 35 | #define LinePair pair < int, class BoundaryLineSet * > | 
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| 36 | #define LineTestPair pair < LinePair::iterator, bool > | 
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| 37 |  | 
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| 38 | #define TriangleMap map < int, class BoundaryTriangleSet * > | 
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| 39 | #define TrianglePair pair < int, class BoundaryTriangleSet * > | 
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| 40 | #define TriangleTestPair pair < TrianglePair::iterator, bool > | 
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| 41 |  | 
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| 42 | #define DistanceMultiMap multimap <double, pair < PointMap::iterator, PointMap::iterator> > | 
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| 43 | #define DistanceMultiMapPair pair <double, pair < PointMap::iterator, PointMap::iterator> > | 
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| 44 |  | 
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| 45 | template <typename T> void SetEndpointsOrdered(T endpoints[2], T endpoint1, T endpoint2) | 
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| 46 | { | 
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| 47 | if (endpoint1->Nr < endpoint2->Nr) { | 
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| 48 | endpoints[0] = endpoint1; | 
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| 49 | endpoints[1] = endpoint2; | 
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| 50 | } else { | 
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| 51 | endpoints[0] = endpoint2; | 
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| 52 | endpoints[1] = endpoint1; | 
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| 53 | } | 
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| 54 | }; | 
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| 55 |  | 
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| 56 | class BoundaryPointSet { | 
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| 57 | public: | 
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| 58 | BoundaryPointSet(); | 
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| 59 | BoundaryPointSet(atom *Walker); | 
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| 60 | ~BoundaryPointSet(); | 
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| 61 |  | 
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| 62 | void AddLine(class BoundaryLineSet *line); | 
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| 63 |  | 
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| 64 | LineMap lines; | 
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| 65 | int LinesCount; | 
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| 66 | atom *node; | 
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| 67 | int Nr; | 
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| 68 | }; | 
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| 69 |  | 
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| 70 | class BoundaryLineSet { | 
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| 71 | public: | 
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| 72 | BoundaryLineSet(); | 
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| 73 | BoundaryLineSet(class BoundaryPointSet *Point[2], int number); | 
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| 74 | ~BoundaryLineSet(); | 
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| 75 |  | 
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| 76 | void AddTriangle(class BoundaryTriangleSet *triangle); | 
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| 77 |  | 
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| 78 | class BoundaryPointSet *endpoints[2]; | 
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| 79 | TriangleMap triangles; | 
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| 80 | int TrianglesCount; | 
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| 81 | int Nr; | 
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| 82 | }; | 
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| 83 |  | 
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| 84 | class BoundaryTriangleSet { | 
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| 85 | public: | 
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| 86 | BoundaryTriangleSet(); | 
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| 87 | BoundaryTriangleSet(class BoundaryLineSet *line[3], int number); | 
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| 88 | ~BoundaryTriangleSet(); | 
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| 89 |  | 
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| 90 | void GetNormalVector(vector &NormalVector); | 
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| 91 |  | 
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| 92 | class BoundaryPointSet *endpoints[3]; | 
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| 93 | class BoundaryLineSet *lines[3]; | 
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| 94 | int Nr; | 
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| 95 | }; | 
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| 96 |  | 
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| 97 | class Tesselation { | 
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| 98 | public: | 
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| 99 |  | 
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| 100 | Tesselation(); | 
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| 101 | ~Tesselation(); | 
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| 102 |  | 
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| 103 | void TesselateOnBoundary(ofstream *out, config *configuration, molecule *mol); | 
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| 104 | void GuessStartingTriangle(ofstream *out); | 
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| 105 | void AddPoint(atom * Walker); | 
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| 106 |  | 
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| 107 | PointMap PointsOnBoundary; | 
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| 108 | LineMap LinesOnBoundary; | 
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| 109 | TriangleMap TrianglesOnBoundary; | 
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| 110 | class BoundaryPointSet *BPS[2]; | 
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| 111 | class BoundaryLineSet *BLS[3]; | 
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| 112 | class BoundaryTriangleSet *BTS; | 
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| 113 | int PointsOnBoundaryCount; | 
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| 114 | int LinesOnBoundaryCount; | 
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| 115 | int TrianglesOnBoundaryCount; | 
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| 116 | }; | 
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| 117 |  | 
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| 118 |  | 
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| 119 | ostream & operator << (ostream &ost, BoundaryPointSet &a); | 
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| 120 | ostream & operator << (ostream &ost, BoundaryLineSet &a); | 
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| 121 | ostream & operator << (ostream &ost, BoundaryTriangleSet &a); | 
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| 122 |  | 
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| 123 |  | 
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| 124 | double VolumeOfConvexEnvelope(ofstream *out, config *configuration, molecule *mol); | 
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| 125 | void CreateClustersinWater(ofstream *out, config *configuration, molecule *mol, double clustervolume, double celldensity, double GreatestDiameter[NDIM]); | 
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| 126 |  | 
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| 127 |  | 
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| 128 | #endif /*BOUNDARY_HPP_*/ | 
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