| [8eb17a] | 1 | #ifndef BOUNDARY_HPP_ | 
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|  | 2 | #define BOUNDARY_HPP_ | 
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|  | 3 |  | 
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|  | 4 | class BoundaryPointSet; | 
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|  | 5 | class BoundaryLineSet; | 
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|  | 6 | class BoundaryTriangleSet; | 
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|  | 7 |  | 
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|  | 8 | // include config.h | 
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|  | 9 | #ifdef HAVE_CONFIG_H | 
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|  | 10 | #include <config.h> | 
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|  | 11 | #endif | 
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|  | 12 |  | 
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|  | 13 | // STL headers | 
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|  | 14 | #include <map> | 
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|  | 15 | #include <set> | 
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|  | 16 | #include <deque> | 
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|  | 17 |  | 
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|  | 18 | #include <gsl/gsl_poly.h> | 
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|  | 19 |  | 
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|  | 20 | #include "molecules.hpp" | 
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|  | 21 |  | 
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|  | 22 | template <typename T> void SetEndpointsOrdered(T endpoints[2], T endpoint1, T endpoint2) | 
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|  | 23 | { | 
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|  | 24 | if (endpoint1->Nr < endpoint2->Nr) { | 
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|  | 25 | endpoints[0] = endpoint1; | 
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|  | 26 | endpoints[1] = endpoint2; | 
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|  | 27 | } else { | 
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|  | 28 | endpoints[0] = endpoint2; | 
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|  | 29 | endpoints[1] = endpoint1; | 
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|  | 30 | } | 
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|  | 31 | }; | 
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|  | 32 |  | 
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|  | 33 | class BoundaryPointSet { | 
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|  | 34 | public: | 
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|  | 35 | BoundaryPointSet(); | 
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|  | 36 | BoundaryPointSet(atom *Walker); | 
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|  | 37 | ~BoundaryPointSet(); | 
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|  | 38 |  | 
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|  | 39 | void AddLine(class BoundaryLineSet *line); | 
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|  | 40 |  | 
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|  | 41 | LineMap lines; | 
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|  | 42 | int LinesCount; | 
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|  | 43 | atom *node; | 
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|  | 44 | int Nr; | 
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|  | 45 | }; | 
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|  | 46 |  | 
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|  | 47 | class BoundaryLineSet { | 
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|  | 48 | public: | 
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|  | 49 | BoundaryLineSet(); | 
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|  | 50 | BoundaryLineSet(class BoundaryPointSet *Point[2], int number); | 
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|  | 51 | ~BoundaryLineSet(); | 
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|  | 52 |  | 
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|  | 53 | void AddTriangle(class BoundaryTriangleSet *triangle); | 
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|  | 54 |  | 
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|  | 55 | class BoundaryPointSet *endpoints[2]; | 
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|  | 56 | TriangleMap triangles; | 
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|  | 57 | int TrianglesCount; | 
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|  | 58 | int Nr; | 
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|  | 59 | }; | 
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|  | 60 |  | 
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|  | 61 | class BoundaryTriangleSet { | 
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|  | 62 | public: | 
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|  | 63 | BoundaryTriangleSet(); | 
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|  | 64 | BoundaryTriangleSet(class BoundaryLineSet *line[3], int number); | 
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|  | 65 | ~BoundaryTriangleSet(); | 
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|  | 66 |  | 
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| [e9b8bb] | 67 | void GetNormalVector(Vector &NormalVector); | 
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| [8eb17a] | 68 |  | 
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|  | 69 | class BoundaryPointSet *endpoints[3]; | 
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|  | 70 | class BoundaryLineSet *lines[3]; | 
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|  | 71 | int Nr; | 
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|  | 72 | }; | 
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|  | 73 |  | 
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|  | 74 | class Tesselation { | 
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|  | 75 | public: | 
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|  | 76 |  | 
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|  | 77 | Tesselation(); | 
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|  | 78 | ~Tesselation(); | 
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|  | 79 |  | 
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|  | 80 | void TesselateOnBoundary(ofstream *out, config *configuration, molecule *mol); | 
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|  | 81 | void GuessStartingTriangle(ofstream *out); | 
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|  | 82 | void AddPoint(atom * Walker); | 
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|  | 83 |  | 
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|  | 84 | PointMap PointsOnBoundary; | 
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|  | 85 | LineMap LinesOnBoundary; | 
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|  | 86 | TriangleMap TrianglesOnBoundary; | 
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|  | 87 | class BoundaryPointSet *BPS[2]; | 
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|  | 88 | class BoundaryLineSet *BLS[3]; | 
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|  | 89 | class BoundaryTriangleSet *BTS; | 
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|  | 90 | int PointsOnBoundaryCount; | 
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|  | 91 | int LinesOnBoundaryCount; | 
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|  | 92 | int TrianglesOnBoundaryCount; | 
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|  | 93 | }; | 
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|  | 94 |  | 
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|  | 95 |  | 
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|  | 96 | ostream & operator << (ostream &ost, BoundaryPointSet &a); | 
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|  | 97 | ostream & operator << (ostream &ost, BoundaryLineSet &a); | 
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|  | 98 | ostream & operator << (ostream &ost, BoundaryTriangleSet &a); | 
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|  | 99 |  | 
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|  | 100 |  | 
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| [6c5812] | 101 | double VolumeOfConvexEnvelope(ofstream *out, config *configuration, Boundaries *BoundaryPoints, molecule *mol); | 
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| [318bfd] | 102 | double * GetDiametersOfCluster(ofstream *out, Boundaries *BoundaryPtr, molecule *mol, bool IsAngstroem); | 
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| [edb650] | 103 | void PrepareClustersinWater(ofstream *out, config *configuration, molecule *mol, double ClusterVolume, double celldensity); | 
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| [8eb17a] | 104 |  | 
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|  | 105 |  | 
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|  | 106 | #endif /*BOUNDARY_HPP_*/ | 
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