| [8eb17a] | 1 | #ifndef BOUNDARY_HPP_ | 
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|  | 2 | #define BOUNDARY_HPP_ | 
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|  | 3 |  | 
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|  | 4 | class BoundaryPointSet; | 
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|  | 5 | class BoundaryLineSet; | 
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|  | 6 | class BoundaryTriangleSet; | 
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|  | 7 |  | 
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|  | 8 | // include config.h | 
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|  | 9 | #ifdef HAVE_CONFIG_H | 
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|  | 10 | #include <config.h> | 
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|  | 11 | #endif | 
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|  | 12 |  | 
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|  | 13 | // STL headers | 
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|  | 14 | #include <map> | 
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|  | 15 | #include <set> | 
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|  | 16 | #include <deque> | 
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|  | 17 |  | 
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|  | 18 | #include <gsl/gsl_poly.h> | 
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|  | 19 |  | 
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|  | 20 | #include "molecules.hpp" | 
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|  | 21 |  | 
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|  | 22 | #define DistanceNrPair pair < double, atom* > | 
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|  | 23 | #define DistanceMap multimap < double, atom* > | 
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|  | 24 | #define DistanceTestPair pair < DistanceMap::iterator, bool> | 
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|  | 25 |  | 
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|  | 26 | #define Boundaries map <double, DistanceNrPair > | 
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|  | 27 | #define BoundariesPair pair<double, DistanceNrPair > | 
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|  | 28 | #define BoundariesTestPair pair< Boundaries::iterator, bool> | 
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|  | 29 |  | 
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|  | 30 | #define PointMap map < int, class BoundaryPointSet * > | 
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|  | 31 | #define PointPair pair < int, class BoundaryPointSet * > | 
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|  | 32 | #define PointTestPair pair < PointMap::iterator, bool > | 
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|  | 33 |  | 
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|  | 34 | #define LineMap map < int, class BoundaryLineSet * > | 
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|  | 35 | #define LinePair pair < int, class BoundaryLineSet * > | 
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|  | 36 | #define LineTestPair pair < LinePair::iterator, bool > | 
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|  | 37 |  | 
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|  | 38 | #define TriangleMap map < int, class BoundaryTriangleSet * > | 
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|  | 39 | #define TrianglePair pair < int, class BoundaryTriangleSet * > | 
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|  | 40 | #define TriangleTestPair pair < TrianglePair::iterator, bool > | 
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|  | 41 |  | 
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|  | 42 | #define DistanceMultiMap multimap <double, pair < PointMap::iterator, PointMap::iterator> > | 
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|  | 43 | #define DistanceMultiMapPair pair <double, pair < PointMap::iterator, PointMap::iterator> > | 
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|  | 44 |  | 
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|  | 45 | template <typename T> void SetEndpointsOrdered(T endpoints[2], T endpoint1, T endpoint2) | 
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|  | 46 | { | 
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|  | 47 | if (endpoint1->Nr < endpoint2->Nr) { | 
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|  | 48 | endpoints[0] = endpoint1; | 
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|  | 49 | endpoints[1] = endpoint2; | 
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|  | 50 | } else { | 
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|  | 51 | endpoints[0] = endpoint2; | 
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|  | 52 | endpoints[1] = endpoint1; | 
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|  | 53 | } | 
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|  | 54 | }; | 
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|  | 55 |  | 
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|  | 56 | class BoundaryPointSet { | 
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|  | 57 | public: | 
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|  | 58 | BoundaryPointSet(); | 
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|  | 59 | BoundaryPointSet(atom *Walker); | 
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|  | 60 | ~BoundaryPointSet(); | 
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|  | 61 |  | 
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|  | 62 | void AddLine(class BoundaryLineSet *line); | 
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|  | 63 |  | 
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|  | 64 | LineMap lines; | 
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|  | 65 | int LinesCount; | 
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|  | 66 | atom *node; | 
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|  | 67 | int Nr; | 
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|  | 68 | }; | 
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|  | 69 |  | 
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|  | 70 | class BoundaryLineSet { | 
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|  | 71 | public: | 
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|  | 72 | BoundaryLineSet(); | 
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|  | 73 | BoundaryLineSet(class BoundaryPointSet *Point[2], int number); | 
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|  | 74 | ~BoundaryLineSet(); | 
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|  | 75 |  | 
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|  | 76 | void AddTriangle(class BoundaryTriangleSet *triangle); | 
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|  | 77 |  | 
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|  | 78 | class BoundaryPointSet *endpoints[2]; | 
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|  | 79 | TriangleMap triangles; | 
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|  | 80 | int TrianglesCount; | 
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|  | 81 | int Nr; | 
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|  | 82 | }; | 
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|  | 83 |  | 
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|  | 84 | class BoundaryTriangleSet { | 
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|  | 85 | public: | 
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|  | 86 | BoundaryTriangleSet(); | 
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|  | 87 | BoundaryTriangleSet(class BoundaryLineSet *line[3], int number); | 
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|  | 88 | ~BoundaryTriangleSet(); | 
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|  | 89 |  | 
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|  | 90 | void GetNormalVector(vector &NormalVector); | 
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|  | 91 |  | 
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|  | 92 | class BoundaryPointSet *endpoints[3]; | 
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|  | 93 | class BoundaryLineSet *lines[3]; | 
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|  | 94 | int Nr; | 
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|  | 95 | }; | 
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|  | 96 |  | 
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|  | 97 | class Tesselation { | 
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|  | 98 | public: | 
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|  | 99 |  | 
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|  | 100 | Tesselation(); | 
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|  | 101 | ~Tesselation(); | 
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|  | 102 |  | 
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|  | 103 | void TesselateOnBoundary(ofstream *out, config *configuration, molecule *mol); | 
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|  | 104 | void GuessStartingTriangle(ofstream *out); | 
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|  | 105 | void AddPoint(atom * Walker); | 
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|  | 106 |  | 
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|  | 107 | PointMap PointsOnBoundary; | 
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|  | 108 | LineMap LinesOnBoundary; | 
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|  | 109 | TriangleMap TrianglesOnBoundary; | 
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|  | 110 | class BoundaryPointSet *BPS[2]; | 
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|  | 111 | class BoundaryLineSet *BLS[3]; | 
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|  | 112 | class BoundaryTriangleSet *BTS; | 
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|  | 113 | int PointsOnBoundaryCount; | 
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|  | 114 | int LinesOnBoundaryCount; | 
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|  | 115 | int TrianglesOnBoundaryCount; | 
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|  | 116 | }; | 
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|  | 117 |  | 
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|  | 118 |  | 
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|  | 119 | ostream & operator << (ostream &ost, BoundaryPointSet &a); | 
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|  | 120 | ostream & operator << (ostream &ost, BoundaryLineSet &a); | 
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|  | 121 | ostream & operator << (ostream &ost, BoundaryTriangleSet &a); | 
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|  | 122 |  | 
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|  | 123 |  | 
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|  | 124 | double VolumeOfConvexEnvelope(ofstream *out, config *configuration, molecule *mol); | 
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|  | 125 | void CreateClustersinWater(ofstream *out, config *configuration, molecule *mol, double clustervolume, double celldensity, double GreatestDiameter[NDIM]); | 
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|  | 126 |  | 
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|  | 127 |  | 
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|  | 128 | #endif /*BOUNDARY_HPP_*/ | 
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