| [bcf653] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2010 University of Bonn. All rights reserved.
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 | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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| [d74077] | 8 | /*
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 | 9 |  * BoundaryPolygonSet.cpp
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 | 10 |  *
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 | 11 |  *  Created on: Jul 29, 2010
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 | 12 |  *      Author: heber
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 | 13 |  */
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 | 14 | 
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| [bf3817] | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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| [bbbad5] | 21 | 
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| [d74077] | 22 | #include "BoundaryPolygonSet.hpp"
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 | 23 | 
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 | 24 | #include <iostream>
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 | 25 | 
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 | 26 | #include "BoundaryLineSet.hpp"
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 | 27 | #include "BoundaryPointSet.hpp"
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 | 28 | #include "BoundaryTriangleSet.hpp"
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 | 29 | #include "TesselPoint.hpp"
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 | 30 | 
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| [ad011c] | 31 | #include "CodePatterns/Assert.hpp"
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 | 32 | #include "CodePatterns/Info.hpp"
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 | 33 | #include "CodePatterns/Log.hpp"
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| [255829] | 34 | #include "CodePatterns/Verbose.hpp"
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 | 35 | #include "Helpers/helpers.hpp"
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| [8f4df1] | 36 | #include "LinearAlgebra/Plane.hpp"
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 | 37 | #include "LinearAlgebra/Vector.hpp"
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| [d74077] | 38 | 
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 | 39 | using namespace std;
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 | 40 | 
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 | 41 | /** Constructor for BoundaryPolygonSet.
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 | 42 |  */
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 | 43 | BoundaryPolygonSet::BoundaryPolygonSet() :
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 | 44 |   Nr(-1)
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 | 45 | {
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 | 46 |   Info FunctionInfo(__func__);
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 | 47 | }
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 | 48 | ;
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 | 49 | 
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 | 50 | /** Destructor of BoundaryPolygonSet.
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 | 51 |  * Just clears endpoints.
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 | 52 |  * \note When removing triangles from a class Tesselation, use RemoveTesselationTriangle()
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 | 53 |  */
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 | 54 | BoundaryPolygonSet::~BoundaryPolygonSet()
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 | 55 | {
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 | 56 |   Info FunctionInfo(__func__);
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 | 57 |   endpoints.clear();
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| [47d041] | 58 |   LOG(1, "Erasing polygon Nr." << Nr << " itself.");
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| [d74077] | 59 | }
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 | 60 | ;
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 | 61 | 
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 | 62 | /** Calculates the normal vector for this triangle.
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 | 63 |  * Is made unique by comparison with \a OtherVector to point in the other direction.
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 | 64 |  * \param &OtherVector direction vector to make normal vector unique.
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 | 65 |  * \return allocated vector in normal direction
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 | 66 |  */
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 | 67 | Vector * BoundaryPolygonSet::GetNormalVector(const Vector &OtherVector) const
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 | 68 | {
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 | 69 |   Info FunctionInfo(__func__);
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 | 70 |   // get normal vector
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 | 71 |   Vector TemporaryNormal;
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 | 72 |   Vector *TotalNormal = new Vector;
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 | 73 |   PointSet::const_iterator Runner[3];
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 | 74 |   for (int i = 0; i < 3; i++) {
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 | 75 |     Runner[i] = endpoints.begin();
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 | 76 |     for (int j = 0; j < i; j++) { // go as much further
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 | 77 |       Runner[i]++;
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 | 78 |       if (Runner[i] == endpoints.end()) {
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| [47d041] | 79 |         ELOG(0, "There are less than three endpoints in the polygon!");
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| [d74077] | 80 |         performCriticalExit();
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 | 81 |       }
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 | 82 |     }
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 | 83 |   }
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 | 84 |   TotalNormal->Zero();
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 | 85 |   int counter = 0;
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 | 86 |   for (; Runner[2] != endpoints.end();) {
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 | 87 |     TemporaryNormal = Plane(((*Runner[0])->node->getPosition()),
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 | 88 |                             ((*Runner[1])->node->getPosition()),
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 | 89 |                             ((*Runner[2])->node->getPosition())).getNormal();
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 | 90 |     for (int i = 0; i < 3; i++) // increase each of them
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 | 91 |       Runner[i]++;
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 | 92 |     (*TotalNormal) += TemporaryNormal;
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 | 93 |   }
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 | 94 |   TotalNormal->Scale(1. / (double) counter);
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 | 95 | 
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 | 96 |   // make it always point inward (any offset vector onto plane projected onto normal vector suffices)
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 | 97 |   if (TotalNormal->ScalarProduct(OtherVector) > 0.)
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 | 98 |     TotalNormal->Scale(-1.);
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| [47d041] | 99 |   LOG(1, "Normal Vector is " << *TotalNormal << ".");
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| [d74077] | 100 | 
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 | 101 |   return TotalNormal;
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 | 102 | }
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 | 103 | ;
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 | 104 | 
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 | 105 | /** Calculates the center point of the triangle.
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 | 106 |  * Is third of the sum of all endpoints.
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 | 107 |  * \param *center central point on return.
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 | 108 |  */
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 | 109 | void BoundaryPolygonSet::GetCenter(Vector * const center) const
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 | 110 | {
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 | 111 |   Info FunctionInfo(__func__);
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 | 112 |   center->Zero();
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 | 113 |   int counter = 0;
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 | 114 |   for(PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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 | 115 |     (*center) += ((*Runner)->node->getPosition());
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 | 116 |     counter++;
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 | 117 |   }
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 | 118 |   center->Scale(1. / (double) counter);
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| [47d041] | 119 |   LOG(1, "Center is at " << *center << ".");
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| [d74077] | 120 | }
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 | 121 | 
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 | 122 | /** Checks whether the polygons contains all three endpoints of the triangle.
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 | 123 |  * \param *triangle triangle to test
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 | 124 |  * \return true - triangle is contained polygon, false - is not
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 | 125 |  */
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 | 126 | bool BoundaryPolygonSet::ContainsBoundaryTriangle(const BoundaryTriangleSet * const triangle) const
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 | 127 | {
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 | 128 |   Info FunctionInfo(__func__);
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 | 129 |   return ContainsPresentTupel(triangle->endpoints, 3);
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 | 130 | }
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 | 131 | ;
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 | 132 | 
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 | 133 | /** Checks whether the polygons contains both endpoints of the line.
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 | 134 |  * \param *line line to test
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 | 135 |  * \return true - line is of the triangle, false - is not
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 | 136 |  */
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 | 137 | bool BoundaryPolygonSet::ContainsBoundaryLine(const BoundaryLineSet * const line) const
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 | 138 | {
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 | 139 |   Info FunctionInfo(__func__);
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 | 140 |   return ContainsPresentTupel(line->endpoints, 2);
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 | 141 | }
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 | 142 | ;
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 | 143 | 
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 | 144 | /** Checks whether point is any of the three endpoints this triangle contains.
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 | 145 |  * \param *point point to test
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 | 146 |  * \return true - point is of the triangle, false - is not
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 | 147 |  */
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 | 148 | bool BoundaryPolygonSet::ContainsBoundaryPoint(const BoundaryPointSet * const point) const
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 | 149 | {
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 | 150 |   Info FunctionInfo(__func__);
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 | 151 |   for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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| [47d041] | 152 |     LOG(0, "Checking against " << **Runner);
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| [d74077] | 153 |     if (point == (*Runner)) {
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| [47d041] | 154 |       LOG(0, " Contained.");
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| [d74077] | 155 |       return true;
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 | 156 |     }
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 | 157 |   }
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| [47d041] | 158 |   LOG(0, " Not contained.");
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| [d74077] | 159 |   return false;
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 | 160 | }
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 | 161 | ;
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 | 162 | 
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 | 163 | /** Checks whether point is any of the three endpoints this triangle contains.
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 | 164 |  * \param *point TesselPoint to test
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 | 165 |  * \return true - point is of the triangle, false - is not
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 | 166 |  */
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 | 167 | bool BoundaryPolygonSet::ContainsBoundaryPoint(const TesselPoint * const point) const
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 | 168 | {
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 | 169 |   Info FunctionInfo(__func__);
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 | 170 |   for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++)
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 | 171 |     if (point == (*Runner)->node) {
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| [47d041] | 172 |       LOG(0, " Contained.");
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| [d74077] | 173 |       return true;
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 | 174 |     }
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| [47d041] | 175 |   LOG(0, " Not contained.");
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| [d74077] | 176 |   return false;
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 | 177 | }
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 | 178 | ;
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 | 179 | 
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 | 180 | /** Checks whether given array of \a *Points coincide with polygons's endpoints.
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 | 181 |  * \param **Points pointer to an array of BoundaryPointSet
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 | 182 |  * \param dim dimension of array
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 | 183 |  * \return true - set of points is contained in polygon, false - is not
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 | 184 |  */
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 | 185 | bool BoundaryPolygonSet::ContainsPresentTupel(const BoundaryPointSet * const * Points, const int dim) const
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 | 186 | {
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 | 187 |   Info FunctionInfo(__func__);
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 | 188 |   int counter = 0;
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| [47d041] | 189 |   LOG(1, "Polygon is " << *this);
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| [d74077] | 190 |   for (int i = 0; i < dim; i++) {
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| [47d041] | 191 |     LOG(1, " Testing endpoint " << *Points[i]);
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| [d74077] | 192 |     if (ContainsBoundaryPoint(Points[i])) {
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 | 193 |       counter++;
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 | 194 |     }
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 | 195 |   }
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 | 196 | 
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 | 197 |   if (counter == dim)
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 | 198 |     return true;
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 | 199 |   else
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 | 200 |     return false;
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 | 201 | }
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 | 202 | ;
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 | 203 | 
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 | 204 | /** Checks whether given PointList coincide with polygons's endpoints.
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 | 205 |  * \param &endpoints PointList
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 | 206 |  * \return true - set of points is contained in polygon, false - is not
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 | 207 |  */
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 | 208 | bool BoundaryPolygonSet::ContainsPresentTupel(const PointSet &endpoints) const
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 | 209 | {
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 | 210 |   Info FunctionInfo(__func__);
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 | 211 |   size_t counter = 0;
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| [47d041] | 212 |   LOG(1, "Polygon is " << *this);
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| [d74077] | 213 |   for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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| [47d041] | 214 |     LOG(1, " Testing endpoint " << **Runner);
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| [d74077] | 215 |     if (ContainsBoundaryPoint(*Runner))
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 | 216 |       counter++;
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 | 217 |   }
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 | 218 | 
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 | 219 |   if (counter == endpoints.size())
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 | 220 |     return true;
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 | 221 |   else
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 | 222 |     return false;
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 | 223 | }
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 | 224 | ;
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 | 225 | 
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 | 226 | /** Checks whether given set of \a *Points coincide with polygons's endpoints.
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 | 227 |  * \param *P pointer to BoundaryPolygonSet
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 | 228 |  * \return true - is the very triangle, false - is not
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 | 229 |  */
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 | 230 | bool BoundaryPolygonSet::ContainsPresentTupel(const BoundaryPolygonSet * const P) const
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 | 231 | {
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 | 232 |   return ContainsPresentTupel((const PointSet) P->endpoints);
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 | 233 | }
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 | 234 | ;
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 | 235 | 
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 | 236 | /** Gathers all the endpoints' triangles in a unique set.
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 | 237 |  * \return set of all triangles
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 | 238 |  */
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 | 239 | TriangleSet * BoundaryPolygonSet::GetAllContainedTrianglesFromEndpoints() const
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 | 240 | {
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 | 241 |   Info FunctionInfo(__func__);
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 | 242 |   pair<TriangleSet::iterator, bool> Tester;
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 | 243 |   TriangleSet *triangles = new TriangleSet;
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 | 244 | 
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 | 245 |   for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++)
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 | 246 |     for (LineMap::const_iterator Walker = (*Runner)->lines.begin(); Walker != (*Runner)->lines.end(); Walker++)
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 | 247 |       for (TriangleMap::const_iterator Sprinter = (Walker->second)->triangles.begin(); Sprinter != (Walker->second)->triangles.end(); Sprinter++) {
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| [47d041] | 248 |         //LOG(0, " Testing triangle " << *(Sprinter->second));
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| [d74077] | 249 |         if (ContainsBoundaryTriangle(Sprinter->second)) {
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 | 250 |           Tester = triangles->insert(Sprinter->second);
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 | 251 |           if (Tester.second)
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| [47d041] | 252 |             LOG(0, "Adding triangle " << *(Sprinter->second));
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| [d74077] | 253 |         }
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 | 254 |       }
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 | 255 | 
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| [47d041] | 256 |   LOG(1, "The Polygon of " << endpoints.size() << " endpoints has " << triangles->size() << " unique triangles in total.");
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| [d74077] | 257 |   return triangles;
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 | 258 | }
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 | 259 | ;
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 | 260 | 
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 | 261 | /** Fills the endpoints of this polygon from the triangles attached to \a *line.
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 | 262 |  * \param *line lines with triangles attached
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 | 263 |  * \return true - polygon contains endpoints, false - line was NULL
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 | 264 |  */
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 | 265 | bool BoundaryPolygonSet::FillPolygonFromTrianglesOfLine(const BoundaryLineSet * const line)
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 | 266 | {
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 | 267 |   Info FunctionInfo(__func__);
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 | 268 |   pair<PointSet::iterator, bool> Tester;
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 | 269 |   if (line == NULL)
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 | 270 |     return false;
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| [47d041] | 271 |   LOG(1, "Filling polygon from line " << *line);
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| [d74077] | 272 |   for (TriangleMap::const_iterator Runner = line->triangles.begin(); Runner != line->triangles.end(); Runner++) {
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 | 273 |     for (int i = 0; i < 3; i++) {
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 | 274 |       Tester = endpoints.insert((Runner->second)->endpoints[i]);
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 | 275 |       if (Tester.second)
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| [47d041] | 276 |         LOG(1, "  Inserting endpoint " << *((Runner->second)->endpoints[i]));
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| [d74077] | 277 |     }
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 | 278 |   }
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 | 279 | 
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 | 280 |   return true;
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 | 281 | }
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 | 282 | ;
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 | 283 | 
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 | 284 | /** output operator for BoundaryPolygonSet.
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 | 285 |  * \param &ost output stream
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 | 286 |  * \param &a boundary polygon
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 | 287 |  */
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 | 288 | ostream &operator <<(ostream &ost, const BoundaryPolygonSet &a)
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 | 289 | {
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 | 290 |   ost << "[" << a.Nr << "|";
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 | 291 |   for (PointSet::const_iterator Runner = a.endpoints.begin(); Runner != a.endpoints.end();) {
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 | 292 |     ost << (*Runner)->node->getName();
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 | 293 |     Runner++;
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 | 294 |     if (Runner != a.endpoints.end())
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 | 295 |       ost << ",";
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 | 296 |   }
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 | 297 |   ost << "]";
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 | 298 |   return ost;
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 | 299 | }
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 | 300 | ;
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 | 301 | 
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