| 1 | /* | 
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| 2 | * Project: MoleCuilder | 
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| 3 | * Description: creates and alters molecular systems | 
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| 4 | * Copyright (C)  2010-2012 University of Bonn. All rights reserved. | 
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| 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | /* | 
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| 9 | * Shape.cpp | 
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| 10 | * | 
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| 11 | *  Created on: Jun 18, 2010 | 
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| 12 | *      Author: crueger | 
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| 13 | */ | 
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| 14 |  | 
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| 15 | // include config.h | 
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| 16 | #ifdef HAVE_CONFIG_H | 
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| 17 | #include <config.h> | 
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| 18 | #endif | 
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| 19 |  | 
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| 20 | #include "CodePatterns/MemDebug.hpp" | 
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| 21 |  | 
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| 22 | #include "CodePatterns/Assert.hpp" | 
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| 23 | #include "LinearAlgebra/Vector.hpp" | 
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| 24 |  | 
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| 25 | #include "Shapes/Shape.hpp" | 
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| 26 | #include "Shapes/Shape_impl.hpp" | 
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| 27 | #include "Shapes/ShapeExceptions.hpp" | 
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| 28 | #include "Shapes/ShapeType.hpp" | 
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| 29 |  | 
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| 30 | #include <algorithm> | 
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| 31 | #include <limits> | 
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| 32 | #include <string> | 
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| 33 |  | 
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| 34 |  | 
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| 35 | Shape::Shape(const Shape& src) : | 
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| 36 | impl(src.getImpl()) | 
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| 37 | {} | 
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| 38 |  | 
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| 39 | Shape::~Shape(){} | 
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| 40 |  | 
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| 41 | bool Shape::isInside(const Vector &point) const{ | 
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| 42 | return impl->isInside(point); | 
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| 43 | } | 
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| 44 |  | 
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| 45 | bool Shape::isOnSurface(const Vector &point) const{ | 
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| 46 | return impl->isOnSurface(point); | 
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| 47 | } | 
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| 48 |  | 
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| 49 | Vector Shape::getNormal(const Vector &point) const throw (NotOnSurfaceException){ | 
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| 50 | return impl->getNormal(point); | 
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| 51 | } | 
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| 52 |  | 
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| 53 | Vector Shape::getCenter() const{ | 
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| 54 | return impl->getCenter(); | 
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| 55 | } | 
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| 56 |  | 
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| 57 | double Shape::getRadius() const{ | 
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| 58 | return impl->getRadius(); | 
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| 59 | } | 
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| 60 |  | 
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| 61 | LineSegmentSet Shape::getLineIntersections(const Line &line) const{ | 
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| 62 | return impl->getLineIntersections(line); | 
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| 63 | } | 
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| 64 |  | 
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| 65 | std::vector<Vector> Shape::getHomogeneousPointsOnSurface(const size_t N) const { | 
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| 66 | return impl->getHomogeneousPointsOnSurface(N); | 
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| 67 | } | 
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| 68 |  | 
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| 69 | std::vector<Vector> Shape::getHomogeneousPointsInVolume(const size_t N) const { | 
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| 70 | return impl->getHomogeneousPointsInVolume(N); | 
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| 71 | } | 
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| 72 |  | 
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| 73 | Shape::Shape(Shape::impl_ptr _impl) : | 
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| 74 | impl(_impl) | 
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| 75 | {} | 
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| 76 |  | 
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| 77 | Shape &Shape::operator=(const Shape& rhs){ | 
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| 78 | if(&rhs!=this){ | 
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| 79 | impl=rhs.getImpl(); | 
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| 80 | } | 
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| 81 | return *this; | 
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| 82 | } | 
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| 83 |  | 
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| 84 | bool Shape::operator==(const Shape &rhs) const{ | 
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| 85 | return (this->getType() == rhs.getType()); | 
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| 86 | } | 
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| 87 |  | 
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| 88 | std::string Shape::toString() const{ | 
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| 89 | return impl->toString(); | 
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| 90 | } | 
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| 91 |  | 
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| 92 | enum ShapeType Shape::getType() const{ | 
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| 93 | return impl->getType(); | 
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| 94 | } | 
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| 95 |  | 
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| 96 | Shape::impl_ptr Shape::getImpl() const{ | 
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| 97 | return impl; | 
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| 98 | } | 
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| 99 |  | 
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| 100 | // allows arbitrary friendship, but only if implementation is known | 
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| 101 | Shape::impl_ptr getShapeImpl(const Shape &shape){ | 
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| 102 | return shape.getImpl(); | 
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| 103 | } | 
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| 104 |  | 
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| 105 | /***************************** Some simple Shapes ***************************/ | 
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| 106 |  | 
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| 107 | Shape Everywhere(){ | 
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| 108 | static Shape::impl_ptr impl = Shape::impl_ptr(new Everywhere_impl()); | 
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| 109 | return Shape(impl); | 
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| 110 | } | 
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| 111 |  | 
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| 112 | Shape Nowhere(){ | 
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| 113 | static Shape::impl_ptr impl = Shape::impl_ptr(new Nowhere_impl()); | 
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| 114 | return Shape(impl); | 
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| 115 | } | 
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| 116 |  | 
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| 117 | /****************************** Operators ***********************************/ | 
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| 118 |  | 
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| 119 | // AND | 
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| 120 |  | 
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| 121 | AndShape_impl::AndShape_impl(const Shape::impl_ptr &_lhs, const Shape::impl_ptr &_rhs) : | 
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| 122 | lhs(_lhs),rhs(_rhs) | 
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| 123 | {} | 
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| 124 |  | 
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| 125 | AndShape_impl::~AndShape_impl(){} | 
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| 126 |  | 
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| 127 | bool AndShape_impl::isInside(const Vector &point) const{ | 
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| 128 | return lhs->isInside(point) && rhs->isInside(point); | 
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| 129 | } | 
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| 130 |  | 
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| 131 | bool AndShape_impl::isOnSurface(const Vector &point) const{ | 
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| 132 | // check the number of surfaces that this point is on | 
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| 133 | int surfaces =0; | 
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| 134 | surfaces += lhs->isOnSurface(point); | 
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| 135 | surfaces += rhs->isOnSurface(point); | 
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| 136 |  | 
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| 137 | switch(surfaces){ | 
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| 138 | case 0: | 
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| 139 | return false; | 
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| 140 | // no break necessary | 
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| 141 | case 1: | 
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| 142 | // if it is inside for the object where it does not lie on | 
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| 143 | // the surface the whole point lies inside | 
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| 144 | return (lhs->isOnSurface(point) && rhs->isInside(point)) || | 
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| 145 | (rhs->isOnSurface(point) && lhs->isInside(point)); | 
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| 146 | // no break necessary | 
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| 147 | case 2: | 
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| 148 | { | 
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| 149 | // it lies on both Shapes... could be an edge or an inner point | 
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| 150 | // test the direction of the normals | 
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| 151 | Vector direction=lhs->getNormal(point)+rhs->getNormal(point); | 
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| 152 | // if the directions are opposite we lie on the inside | 
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| 153 | return !direction.IsZero(); | 
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| 154 | } | 
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| 155 | // no break necessary | 
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| 156 | default: | 
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| 157 | // if this happens there is something wrong | 
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| 158 | ASSERT(0,"Default case should have never been used"); | 
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| 159 | } | 
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| 160 | return false; // never reached | 
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| 161 | } | 
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| 162 |  | 
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| 163 | Vector AndShape_impl::getNormal(const Vector &point) const throw (NotOnSurfaceException){ | 
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| 164 | Vector res; | 
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| 165 | if(!isOnSurface(point)){ | 
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| 166 | throw NotOnSurfaceException() << ShapeVector(&point); | 
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| 167 | } | 
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| 168 | res += lhs->isOnSurface(point)?lhs->getNormal(point):zeroVec; | 
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| 169 | res += rhs->isOnSurface(point)?rhs->getNormal(point):zeroVec; | 
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| 170 | res.Normalize(); | 
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| 171 | return res; | 
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| 172 | } | 
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| 173 |  | 
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| 174 | Vector AndShape_impl::getCenter() const | 
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| 175 | { | 
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| 176 | // calculate closest position on sphere surface to other center .. | 
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| 177 | const Vector rhsDistance = rhs->getCenter() + rhs->getRadius()*((lhs->getCenter() - rhs->getCenter()).getNormalized()); | 
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| 178 | const Vector lhsDistance = lhs->getCenter() + lhs->getRadius()*((rhs->getCenter() - lhs->getCenter()).getNormalized()); | 
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| 179 | // .. and then it's right in between those two | 
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| 180 | return 0.5*(rhsDistance + lhsDistance); | 
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| 181 | } | 
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| 182 |  | 
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| 183 | double AndShape_impl::getRadius() const | 
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| 184 | { | 
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| 185 | const double distance = (lhs->getCenter() - rhs->getCenter()).Norm(); | 
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| 186 | const double minradii = std::min(lhs->getRadius(), rhs->getRadius()); | 
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| 187 | // if no intersection | 
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| 188 | if (distance > (lhs->getRadius() + rhs->getRadius())) | 
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| 189 | return 0.; | 
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| 190 | else // if intersection it can only be the smaller one | 
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| 191 | return minradii; | 
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| 192 | } | 
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| 193 |  | 
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| 194 | LineSegmentSet AndShape_impl::getLineIntersections(const Line &line) const{ | 
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| 195 | return intersect(lhs->getLineIntersections(line),rhs->getLineIntersections(line)); | 
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| 196 | } | 
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| 197 |  | 
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| 198 | std::string AndShape_impl::toString() const{ | 
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| 199 | return std::string("(") + lhs->toString() + std::string("&&") + rhs->toString() + std::string(")"); | 
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| 200 | } | 
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| 201 |  | 
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| 202 | enum ShapeType AndShape_impl::getType() const{ | 
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| 203 | return CombinedType; | 
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| 204 | } | 
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| 205 |  | 
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| 206 | std::vector<Vector> AndShape_impl::getHomogeneousPointsOnSurface(const size_t N) const { | 
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| 207 | std::vector<Vector> PointsOnSurface_lhs = lhs->getHomogeneousPointsOnSurface(N); | 
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| 208 | std::vector<Vector> PointsOnSurface_rhs = rhs->getHomogeneousPointsOnSurface(N); | 
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| 209 | std::vector<Vector> PointsOnSurface; | 
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| 210 |  | 
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| 211 | for (std::vector<Vector>::const_iterator iter = PointsOnSurface_lhs.begin(); iter != PointsOnSurface_lhs.end(); ++iter) { | 
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| 212 | if (rhs->isInside(*iter)) | 
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| 213 | PointsOnSurface.push_back(*iter); | 
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| 214 | } | 
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| 215 | for (std::vector<Vector>::const_iterator iter = PointsOnSurface_rhs.begin(); iter != PointsOnSurface_rhs.end(); ++iter) { | 
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| 216 | if (lhs->isInside(*iter)) | 
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| 217 | PointsOnSurface.push_back(*iter); | 
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| 218 | } | 
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| 219 |  | 
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| 220 | return PointsOnSurface; | 
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| 221 | } | 
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| 222 |  | 
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| 223 | std::vector<Vector> AndShape_impl::getHomogeneousPointsInVolume(const size_t N) const { | 
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| 224 | ASSERT(0, | 
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| 225 | "AndShape_impl::getHomogeneousPointsInVolume() - not implemented."); | 
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| 226 | return std::vector<Vector>(); | 
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| 227 | } | 
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| 228 |  | 
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| 229 |  | 
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| 230 | Shape operator&&(const Shape &lhs,const Shape &rhs){ | 
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| 231 | Shape::impl_ptr newImpl = Shape::impl_ptr(new AndShape_impl(getShapeImpl(lhs),getShapeImpl(rhs))); | 
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| 232 | return Shape(newImpl); | 
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| 233 | } | 
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| 234 |  | 
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| 235 | // OR | 
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| 236 |  | 
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| 237 | OrShape_impl::OrShape_impl(const Shape::impl_ptr &_lhs, const Shape::impl_ptr &_rhs) : | 
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| 238 | lhs(_lhs),rhs(_rhs) | 
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| 239 | {} | 
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| 240 |  | 
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| 241 | OrShape_impl::~OrShape_impl(){} | 
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| 242 |  | 
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| 243 | bool OrShape_impl::isInside(const Vector &point) const{ | 
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| 244 | return rhs->isInside(point) || lhs->isInside(point); | 
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| 245 | } | 
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| 246 |  | 
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| 247 | bool OrShape_impl::isOnSurface(const Vector &point) const{ | 
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| 248 | // check the number of surfaces that this point is on | 
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| 249 | int surfaces =0; | 
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| 250 | surfaces += lhs->isOnSurface(point); | 
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| 251 | surfaces += rhs->isOnSurface(point); | 
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| 252 |  | 
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| 253 | switch(surfaces){ | 
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| 254 | case 0: | 
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| 255 | return false; | 
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| 256 | // no break necessary | 
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| 257 | case 1: | 
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| 258 | // if it is inside for the object where it does not lie on | 
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| 259 | // the surface the whole point lies inside | 
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| 260 | return (lhs->isOnSurface(point) && !rhs->isInside(point)) || | 
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| 261 | (rhs->isOnSurface(point) && !lhs->isInside(point)); | 
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| 262 | // no break necessary | 
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| 263 | case 2: | 
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| 264 | { | 
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| 265 | // it lies on both Shapes... could be an edge or an inner point | 
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| 266 | // test the direction of the normals | 
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| 267 | Vector direction=lhs->getNormal(point)+rhs->getNormal(point); | 
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| 268 | // if the directions are opposite we lie on the inside | 
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| 269 | return !direction.IsZero(); | 
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| 270 | } | 
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| 271 | // no break necessary | 
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| 272 | default: | 
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| 273 | // if this happens there is something wrong | 
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| 274 | ASSERT(0,"Default case should have never been used"); | 
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| 275 | } | 
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| 276 | return false; // never reached | 
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| 277 | } | 
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| 278 |  | 
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| 279 | Vector OrShape_impl::getNormal(const Vector &point) const throw (NotOnSurfaceException){ | 
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| 280 | Vector res; | 
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| 281 | if(!isOnSurface(point)){ | 
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| 282 | throw NotOnSurfaceException() << ShapeVector(&point); | 
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| 283 | } | 
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| 284 | res += lhs->isOnSurface(point)?lhs->getNormal(point):zeroVec; | 
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| 285 | res += rhs->isOnSurface(point)?rhs->getNormal(point):zeroVec; | 
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| 286 | res.Normalize(); | 
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| 287 | return res; | 
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| 288 | } | 
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| 289 |  | 
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| 290 | Vector OrShape_impl::getCenter() const | 
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| 291 | { | 
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| 292 | // calculate furthest position on sphere surface to other center .. | 
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| 293 | const Vector rhsDistance = rhs->getCenter() + rhs->getRadius()*((rhs->getCenter() - lhs->getCenter()).getNormalized()); | 
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| 294 | const Vector lhsDistance = lhs->getCenter() + lhs->getRadius()*((lhs->getCenter() - rhs->getCenter()).getNormalized()); | 
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| 295 | // .. and then it's right in between those two | 
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| 296 | return .5*(rhsDistance + lhsDistance); | 
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| 297 | } | 
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| 298 |  | 
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| 299 | double OrShape_impl::getRadius() const | 
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| 300 | { | 
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| 301 | const Vector rhsDistance = rhs->getCenter() + rhs->getRadius()*((rhs->getCenter() - lhs->getCenter()).getNormalized()); | 
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| 302 | const Vector lhsDistance = lhs->getCenter() + lhs->getRadius()*((lhs->getCenter() - rhs->getCenter()).getNormalized()); | 
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| 303 | return .5*(rhsDistance - lhsDistance).Norm(); | 
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| 304 | } | 
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| 305 |  | 
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| 306 | LineSegmentSet OrShape_impl::getLineIntersections(const Line &line) const{ | 
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| 307 | return merge(lhs->getLineIntersections(line),rhs->getLineIntersections(line)); | 
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| 308 | } | 
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| 309 |  | 
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| 310 | std::string OrShape_impl::toString() const{ | 
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| 311 | return std::string("(") + lhs->toString() + std::string("||") + rhs->toString() + std::string(")"); | 
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| 312 | } | 
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| 313 |  | 
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| 314 | enum ShapeType OrShape_impl::getType() const{ | 
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| 315 | return CombinedType; | 
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| 316 | } | 
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| 317 |  | 
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| 318 | std::vector<Vector> OrShape_impl::getHomogeneousPointsOnSurface(const size_t N) const { | 
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| 319 | std::vector<Vector> PointsOnSurface_lhs = lhs->getHomogeneousPointsOnSurface(N); | 
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| 320 | std::vector<Vector> PointsOnSurface_rhs = rhs->getHomogeneousPointsOnSurface(N); | 
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| 321 | std::vector<Vector> PointsOnSurface; | 
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| 322 |  | 
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| 323 | for (std::vector<Vector>::const_iterator iter = PointsOnSurface_lhs.begin(); iter != PointsOnSurface_lhs.end(); ++iter) { | 
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| 324 | if (!rhs->isInside(*iter)) | 
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| 325 | PointsOnSurface.push_back(*iter); | 
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| 326 | } | 
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| 327 | for (std::vector<Vector>::const_iterator iter = PointsOnSurface_rhs.begin(); iter != PointsOnSurface_rhs.end(); ++iter) { | 
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| 328 | if (!lhs->isInside(*iter)) | 
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| 329 | PointsOnSurface.push_back(*iter); | 
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| 330 | } | 
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| 331 |  | 
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| 332 | return PointsOnSurface; | 
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| 333 | } | 
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| 334 |  | 
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| 335 | std::vector<Vector> OrShape_impl::getHomogeneousPointsInVolume(const size_t N) const { | 
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| 336 | ASSERT(0, | 
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| 337 | "OrShape_impl::getHomogeneousPointsInVolume() - not implemented."); | 
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| 338 | return std::vector<Vector>(); | 
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| 339 | } | 
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| 340 |  | 
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| 341 | Shape operator||(const Shape &lhs,const Shape &rhs){ | 
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| 342 | Shape::impl_ptr newImpl = Shape::impl_ptr(new OrShape_impl(getShapeImpl(lhs),getShapeImpl(rhs))); | 
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| 343 | return Shape(newImpl); | 
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| 344 | } | 
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| 345 |  | 
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| 346 | // NOT | 
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| 347 |  | 
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| 348 | NotShape_impl::NotShape_impl(const Shape::impl_ptr &_arg) : | 
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| 349 | arg(_arg) | 
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| 350 | {} | 
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| 351 |  | 
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| 352 | NotShape_impl::~NotShape_impl(){} | 
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| 353 |  | 
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| 354 | bool NotShape_impl::isInside(const Vector &point) const{ | 
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| 355 | return !arg->isInside(point); | 
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| 356 | } | 
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| 357 |  | 
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| 358 | bool NotShape_impl::isOnSurface(const Vector &point) const{ | 
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| 359 | return arg->isOnSurface(point); | 
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| 360 | } | 
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| 361 |  | 
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| 362 | Vector NotShape_impl::getNormal(const Vector &point) const throw(NotOnSurfaceException){ | 
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| 363 | return -1.*arg->getNormal(point); | 
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| 364 | } | 
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| 365 |  | 
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| 366 | Vector NotShape_impl::getCenter() const | 
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| 367 | { | 
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| 368 | return arg->getCenter(); | 
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| 369 | } | 
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| 370 |  | 
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| 371 | double NotShape_impl::getRadius() const | 
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| 372 | { | 
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| 373 | return std::numeric_limits<double>::infinity(); | 
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| 374 | } | 
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| 375 |  | 
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| 376 | LineSegmentSet NotShape_impl::getLineIntersections(const Line &line) const{ | 
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| 377 | return invert(arg->getLineIntersections(line)); | 
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| 378 | } | 
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| 379 |  | 
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| 380 | std::string NotShape_impl::toString() const{ | 
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| 381 | return std::string("!") + arg->toString(); | 
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| 382 | } | 
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| 383 |  | 
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| 384 | enum ShapeType NotShape_impl::getType() const{ | 
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| 385 | return CombinedType; | 
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| 386 | } | 
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| 387 |  | 
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| 388 | std::vector<Vector> NotShape_impl::getHomogeneousPointsOnSurface(const size_t N) const { | 
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| 389 | // surfaces are the same, only normal direction is different | 
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| 390 | return arg->getHomogeneousPointsOnSurface(N); | 
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| 391 | } | 
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| 392 |  | 
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| 393 | std::vector<Vector> NotShape_impl::getHomogeneousPointsInVolume(const size_t N) const { | 
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| 394 | ASSERT(0, | 
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| 395 | "NotShape_impl::getHomogeneousPointsInVolume() - not implemented."); | 
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| 396 | return std::vector<Vector>(); | 
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| 397 | } | 
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| 398 |  | 
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| 399 | Shape operator!(const Shape &arg){ | 
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| 400 | Shape::impl_ptr newImpl = Shape::impl_ptr(new NotShape_impl(getShapeImpl(arg))); | 
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| 401 | return Shape(newImpl); | 
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| 402 | } | 
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| 403 |  | 
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| 404 | /**************** global operations *********************************/ | 
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| 405 | std::ostream &operator<<(std::ostream &ost,const Shape &shape){ | 
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| 406 | ost << shape.toString(); | 
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| 407 | return ost; | 
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| 408 | } | 
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