| 1 | /* | 
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| 2 | * PythonScripting.hpp | 
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| 3 | * | 
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| 4 | *  Created on: Apr 13, 2012 | 
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| 5 | *      Author: heber | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | #ifndef PYTHONSCRIPTING_HPP_ | 
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| 9 | #define PYTHONSCRIPTING_HPP_ | 
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| 10 |  | 
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| 11 |  | 
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| 12 | // include config.h | 
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| 13 | #ifdef HAVE_CONFIG_H | 
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| 14 | #include <config.h> | 
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| 15 | #endif | 
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| 16 |  | 
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| 17 |  | 
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| 18 | #include <boost/python.hpp> | 
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| 19 | #include <boost/python/module.hpp> | 
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| 20 | #include <boost/python/args.hpp> | 
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| 21 |  | 
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| 22 | #include "CodePatterns/toString.hpp" | 
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| 23 |  | 
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| 24 | //!> define all present actions | 
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| 25 | #include "GlobalListOfActions.hpp" | 
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| 26 |  | 
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| 27 | //!> python wrapping for all of these actions | 
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| 28 | #include "AllActionPython.hpp" | 
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| 29 |  | 
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| 30 | namespace MoleCuilder { | 
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| 31 |  | 
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| 32 | namespace PythonTypes { | 
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| 33 |  | 
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| 34 | inline void IndexError(){ | 
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| 35 | PyErr_SetString(PyExc_IndexError, "Index out of range"); | 
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| 36 | boost::python::throw_error_already_set(); | 
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| 37 | } | 
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| 38 |  | 
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| 39 | template<class T> | 
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| 40 | struct vec_item{ | 
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| 41 | typedef typename T::value_type V; | 
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| 42 | static V& get(T& x, int i){ | 
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| 43 | static V nothing; | 
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| 44 | if(i < 0) i += x.size(); | 
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| 45 | if(i >= 0 && i < int(x.size())) return x[i]; | 
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| 46 | IndexError(); | 
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| 47 | return nothing; | 
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| 48 | } | 
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| 49 | static void set(T& x, int i, V const& v){ | 
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| 50 | if(i < 0) i += x.size(); | 
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| 51 | if(i >= 0 && i < int(x.size())) x[i] = v; | 
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| 52 | else IndexError(); | 
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| 53 | } | 
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| 54 | static void del(T& x, int i){ | 
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| 55 | if(i < 0) i += x.size(); | 
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| 56 | if(i >= 0 && i < int(x.size())) x.erase(x.begin() + i); | 
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| 57 | else IndexError(); | 
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| 58 | } | 
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| 59 | static void add(T& x, V const& v){ | 
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| 60 | x.push_back(v); | 
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| 61 | } | 
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| 62 | }; | 
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| 63 |  | 
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| 64 |  | 
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| 65 | } /* namespace PythonTypes */ | 
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| 66 | } /* namespace MoleCuilder */ | 
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| 67 |  | 
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| 68 | BOOST_PYTHON_MODULE(pyMoleCuilder) | 
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| 69 | { | 
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| 70 | // set the docstring of the current module scope | 
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| 71 | boost::python::scope().attr("__doc__") = "pyMolecuilder are the python bindings to all Actions of the program suite MoleCuilder.\n\nMoleCuilder is a program to build molecular (dynamics) worlds, allowing you indefinite manipulation, control and analysis over the atoms and molecules within a simulation domain."; | 
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| 72 |  | 
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| 73 | // STL Vectors: | 
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| 74 | // doubleVec | 
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| 75 | boost::python::class_< std::vector< double > >("PythonType_doubleVec") | 
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| 76 | .def("__len__", &std::vector< double >::size) | 
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| 77 | .def("clear", &std::vector< double >::clear) | 
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| 78 | .def("append", &MoleCuilder::PythonTypes::vec_item< std::vector< double > >::add, | 
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| 79 | boost::python::with_custodian_and_ward<1, 2>()) // let container keep value | 
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| 80 | .def("__getitem__", &MoleCuilder::PythonTypes::vec_item< std::vector< double > >::get, | 
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| 81 | boost::python::return_value_policy<boost::python::copy_non_const_reference>()) | 
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| 82 | .def("__setitem__", &MoleCuilder::PythonTypes::vec_item< std::vector< double > >::set, | 
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| 83 | boost::python::with_custodian_and_ward<1,2>()) // to let container keep value | 
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| 84 | .def("__delitem__", &MoleCuilder::PythonTypes::vec_item< std::vector< double > >::del) | 
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| 85 | .def("__iter__", boost::python::iterator< std::vector< double > >()) | 
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| 86 | ; | 
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| 87 |  | 
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| 88 |  | 
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| 89 | #define export_print(z,n,list) \ | 
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| 90 | BOOST_PP_CAT(export_, BOOST_PP_SEQ_ELEM(n, list))(); | 
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| 91 | #define BOOST_PP_LOCAL_MACRO(n) export_print(~, n, GLOBALLISTOFACTIONS) | 
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| 92 | #define BOOST_PP_LOCAL_LIMITS  (0, BOOST_PP_DEC(BOOST_PP_SEQ_SIZE(GLOBALLISTOFACTIONS))) | 
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| 93 | #include BOOST_PP_LOCAL_ITERATE() | 
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| 94 | #undef instance_print | 
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| 95 | } | 
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| 96 |  | 
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| 97 | bool executePythonScript(const std::string &pythonfilename_string) | 
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| 98 | { | 
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| 99 | boost::filesystem::path pythonfilename(pythonfilename_string); | 
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| 100 | if (exists(pythonfilename)) { | 
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| 101 | // parse in and execute the local and global config.py | 
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| 102 | try { | 
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| 103 | PyImport_AppendInittab( "pyMoleCuilder", &initpyMoleCuilder ); | 
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| 104 |  | 
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| 105 | Py_Initialize(); | 
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| 106 |  | 
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| 107 | boost::python::object main_module(( | 
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| 108 | boost::python::handle<>(boost::python::borrowed(PyImport_AddModule("__main__"))))); | 
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| 109 |  | 
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| 110 | boost::python::object main_namespace = main_module.attr("__dict__"); | 
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| 111 |  | 
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| 112 | boost::python::object molecuilder_module( (boost::python::handle<>(PyImport_ImportModule("pyMoleCuilder"))) ); | 
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| 113 | main_namespace["pyMoleCuilder"] = molecuilder_module; | 
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| 114 |  | 
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| 115 | // parse file into a string | 
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| 116 | std::ifstream pythonfile(pythonfilename.string().c_str()); | 
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| 117 | std::string pythonscript( std::istreambuf_iterator<char>(pythonfile), | 
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| 118 | (std::istreambuf_iterator<char>()) ); | 
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| 119 | std::string enveloped_script("print \"BEGIN of "+pythonfilename_string+":\"\n"); | 
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| 120 | enveloped_script += pythonscript; | 
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| 121 | enveloped_script += std::string("print \"END of "+pythonfilename_string+":\"\n"); | 
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| 122 |  | 
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| 123 | boost::python::handle<> ignored(( PyRun_String( enveloped_script.c_str(), | 
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| 124 | Py_file_input, | 
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| 125 | main_namespace.ptr(), | 
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| 126 | main_namespace.ptr() ) )); | 
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| 127 |  | 
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| 128 | } catch( boost::python::error_already_set ) { | 
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| 129 | PyErr_Print(); | 
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| 130 | } | 
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| 131 | } | 
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| 132 | } | 
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| 133 |  | 
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| 134 | #endif /* PYTHONSCRIPTING_HPP_ */ | 
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