source: src/Potentials/Specifics/ConstantPotential.hpp@ 713888

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 713888 was 713888, checked in by Frederik Heber <heber@…>, 12 years ago

Made PotentialFactory friend of all specific potentials and added default cstor.

  • Property mode set to 100644
File size: 5.0 KB
Line 
1/*
2 * ConstantPotential.hpp
3 *
4 * Created on: May 09, 2013
5 * Author: heber
6 */
7
8#ifndef CONSTANTPOTENTIAL_HPP_
9#define CONSTANTPOTENTIAL_HPP_
10
11
12// include config.h
13#ifdef HAVE_CONFIG_H
14#include <config.h>
15#endif
16
17#include <limits>
18
19#include "Potentials/EmpiricalPotential.hpp"
20
21class PotentialFactory;
22class TrainingData;
23
24/** This is the implementation of a constant potential to adapt to any offset
25 * in the potential energy.
26 *
27 * This evaluates \f$ k \f$.
28 *
29 */
30class ConstantPotential :
31 public EmpiricalPotential
32{
33 //!> grant unit test access to internal parts
34 friend class ConstantPotentialTest;
35 //!> grant PotentialFactory access to default cstor
36 friend class PotentialFactory;
37 // some repeated typedefs to avoid ambiguities
38 typedef FunctionModel::arguments_t arguments_t;
39 typedef FunctionModel::result_t result_t;
40 typedef FunctionModel::results_t results_t;
41 typedef EmpiricalPotential::derivative_components_t derivative_components_t;
42 typedef FunctionModel::parameters_t parameters_t;
43private:
44 /** Private default constructor.
45 *
46 * This prevents creation of potential without set ParticleTypes_t.
47 *
48 */
49 ConstantPotential() {}
50
51public:
52 ConstantPotential(const ParticleTypes_t &_ParticleTypes);
53 ConstantPotential(
54 const ParticleTypes_t &_ParticleTypes,
55 const double _energy_offset);
56 virtual ~ConstantPotential() {}
57
58 /** Setter for parameters as required by FunctionModel interface.
59 *
60 * \param _params given set of parameters
61 */
62 void setParameters(const parameters_t &_params);
63
64 /** Getter for parameters as required by FunctionModel interface.
65 *
66 * \return set of parameters
67 */
68 parameters_t getParameters() const
69 {
70 return params;
71 }
72
73 /** Sets the parameter randomly within the sensible range of each parameter.
74 *
75 * \param data container with training data for guesstimating range
76 */
77 void setParametersToRandomInitialValues(const TrainingData &data);
78
79 /** Getter for the number of parameters of this model function.
80 *
81 * \return number of parameters
82 */
83 size_t getParameterDimension() const
84 {
85 return 1;
86 }
87
88 /** Evaluates the harmonic potential function for the given arguments.
89 *
90 * @param arguments single distance
91 * @return value of the potential function
92 */
93 results_t operator()(const arguments_t &arguments) const;
94
95 /** Evaluates the derivative of the potential function.
96 *
97 * @param arguments single distance
98 * @return vector with derivative with respect to the input degrees of freedom
99 */
100 derivative_components_t derivative(const arguments_t &arguments) const;
101
102 /** Evaluates the derivative of the function with the given \a arguments
103 * with respect to a specific parameter indicated by \a index.
104 *
105 * \param arguments set of arguments as input variables to the function
106 * \param index derivative of which parameter
107 * \return result vector containing the derivative with respect to the given
108 * input
109 */
110 results_t parameter_derivative(const arguments_t &arguments, const size_t index) const;
111
112 /** Return the token name of this specific potential.
113 *
114 * \return token name of the potential
115 */
116 const std::string& getToken() const
117 { return potential_token; }
118
119 /** Returns a vector of parameter names.
120 *
121 * This is required from the specific implementation
122 *
123 * \return vector of strings containing parameter names
124 */
125 const ParameterNames_t& getParameterNames() const
126 { return ParameterNames; }
127
128 /** States whether lower and upper boundaries should be used to constraint
129 * the parameter search for this function model.
130 *
131 * \return true - constraints should be used, false - else
132 */
133 bool isBoxConstraint() const {
134 return true;
135 }
136
137 /** Returns a vector which are the lower boundaries for each parameter_t
138 * of this FunctionModel.
139 *
140 * \return vector of parameter_t resembling lowest allowed values
141 */
142 parameters_t getLowerBoxConstraints() const {
143 parameters_t lowerbound(getParameterDimension(), -std::numeric_limits<double>::max());
144 return lowerbound;
145 }
146
147 /** Returns a vector which are the upper boundaries for each parameter_t
148 * of this FunctionModel.
149 *
150 * \return vector of parameter_t resembling highest allowed values
151 */
152 parameters_t getUpperBoxConstraints() const {
153 return parameters_t(getParameterDimension(), std::numeric_limits<double>::max());
154 }
155
156 /** Returns a bound function to be used with TrainingData, extracting distances
157 * from a Fragment.
158 *
159 * \return bound function extracting distances from a fragment
160 */
161 FunctionModel::extractor_t getFragmentSpecificExtractor() const;
162
163 enum parameter_enum_t {
164 energy_offset=0,
165 MAXPARAMS
166 };
167
168private:
169 //!> parameter vector with parameters as in enum parameter_enum_t
170 parameters_t params;
171
172 //!> static definitions of the parameter name for this potential
173 static const ParameterNames_t ParameterNames;
174
175 //!> static token of this potential type
176 static const std::string potential_token;
177};
178
179#endif /* CONSTANTPOTENTIAL_HPP_ */
Note: See TracBrowser for help on using the repository browser.