/*
 * Project: MoleCuilder
 * Description: creates and alters molecular systems
 * Copyright (C)  2012 University of Bonn. All rights reserved.
 * Copyright (C)  2013 Frederik Heber. All rights reserved.
 * Please see the COPYING file or "Copyright notice" in builder.cpp for details.
 * 
 *
 *   This file is part of MoleCuilder.
 *
 *    MoleCuilder is free software: you can redistribute it and/or modify
 *    it under the terms of the GNU General Public License as published by
 *    the Free Software Foundation, either version 2 of the License, or
 *    (at your option) any later version.
 *
 *    MoleCuilder is distributed in the hope that it will be useful,
 *    but WITHOUT ANY WARRANTY; without even the implied warranty of
 *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *    GNU General Public License for more details.
 *
 *    You should have received a copy of the GNU General Public License
 *    along with MoleCuilder.  If not, see . 
 */
/*
 * ConstantPotential.cpp
 *
 *  Created on: May 09, 2013
 *      Author: heber
 */
// include config.h
#ifdef HAVE_CONFIG_H
#include 
#endif
//#include "CodePatterns/MemDebug.hpp"
#include "ConstantPotential.hpp"
#include  // for 'map_list_of()'
#include 
#include 
#include 
#include 
#include "CodePatterns/Assert.hpp"
#include "FunctionApproximation/Extractors.hpp"
#include "FunctionApproximation/TrainingData.hpp"
#include "Potentials/helpers.hpp"
#include "Potentials/ParticleTypeCheckers.hpp"
#include "Potentials/InternalCoordinates/OneBody_Constant.hpp"
class Fragment;
// static definitions
const ConstantPotential::ParameterNames_t
ConstantPotential::ParameterNames =
      boost::assign::list_of
      ("energy_offset") //
    ;
const std::string ConstantPotential::potential_token("constant");
Coordinator::ptr ConstantPotential::coordinator( /* Memory::ignore( */ new OneBody_Constant() /*) */);
static BindingModel generateBindingModel(const EmpiricalPotential::ParticleTypes_t &_ParticleTypes)
{
  // fill nodes
  ASSERT( _ParticleTypes.size() <= (size_t)1,
      "generateBindingModel() - ConstantPotential needs zero or one type.");
  BindingModel::vector_nodes_t nodes;
  if (_ParticleTypes.size() == (size_t)1)
    nodes.push_back( FragmentNode(_ParticleTypes.front(), 0) );
  // there are no edges
  HomologyGraph::edges_t edges;
  return BindingModel(nodes, edges);
}
ConstantPotential::ConstantPotential() :
    EmpiricalPotential(),
    params(parameters_t(MAXPARAMS, 0.)),
    bindingmodel(BindingModel())
{
  // have some decent defaults for parameter_derivative checking
  params[energy_offset] = 0.1;
}
ConstantPotential::ConstantPotential(
    const ParticleTypes_t &_ParticleTypes
    ) :
  EmpiricalPotential(_ParticleTypes),
  params(parameters_t(MAXPARAMS, 0.)),
  bindingmodel(generateBindingModel(_ParticleTypes))
{
  // have some decent defaults for parameter_derivative checking
  params[energy_offset] = 0.1;
}
ConstantPotential::ConstantPotential(
    const ParticleTypes_t &_ParticleTypes,
    const double _energy_offset) :
  EmpiricalPotential(_ParticleTypes),
  params(parameters_t(MAXPARAMS, 0.)),
  bindingmodel(generateBindingModel(_ParticleTypes))
{
  params[energy_offset] = _energy_offset;
}
void ConstantPotential::setParameters(const parameters_t &_params)
{
  const size_t paramsDim = _params.size();
  ASSERT( paramsDim <= getParameterDimension(),
      "ConstantPotential::setParameters() - we need not more than "
      +toString(getParameterDimension())+" parameters.");
  for(size_t i=0;i