Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | Last change
 on this file since 435065 was             56f73b, checked in by Frederik Heber <heber@…>, 15 years ago | 
        
          | 
Added config.h also to all header files, code check test ascertain this in the future.
 as we want to use config.h to pass stuff such as MEMDEBUG, NDEBUG,
LOG_OBSERVER, we have to make sure that it is present in each and every
file.
split up CodeChecks/testsuite.at: each test has its own .at file.
 | 
        
          | 
              
Property                 mode
 set to                 100644 | 
        
          | File size:
            3.1 KB | 
      
      
| Line |  | 
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| 1 | /* | 
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| 2 | * PcpParser.hpp | 
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| 3 | * | 
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| 4 | *  Created on: 12.06.2010 | 
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| 5 | *      Author: heber | 
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| 6 | */ | 
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| 7 |  | 
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| 8 | #ifndef PCPPARSER_HPP_ | 
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| 9 | #define PCPPARSER_HPP_ | 
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| 10 |  | 
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| 11 | // include config.h | 
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| 12 | #ifdef HAVE_CONFIG_H | 
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| 13 | #include <config.h> | 
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| 14 | #endif | 
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| 15 |  | 
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| 16 |  | 
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| 17 | #include <iosfwd> | 
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| 18 | #include "Parser/FormatParser.hpp" | 
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| 19 |  | 
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| 20 | /** | 
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| 21 | * Parser for PCP config files. | 
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| 22 | */ | 
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| 23 | class PcpParser : public FormatParser { | 
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| 24 | public: | 
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| 25 | PcpParser(); | 
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| 26 | ~PcpParser(); | 
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| 27 | void load(std::istream* file); | 
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| 28 | void save(std::ostream* file, const std::vector<atom *> &atoms); | 
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| 29 |  | 
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| 30 | bool operator==(const PcpParser& b) const; | 
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| 31 |  | 
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| 32 | private: | 
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| 33 |  | 
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| 34 | void ParseThermostats(class ConfigFileBuffer * const fb); | 
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| 35 | void OutputAtoms(ostream *file, const std::vector<atom *> &allatoms, map<int, int> &ZtoIndexMap); | 
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| 36 | void OutputElements(ostream *file, const std::vector<atom *> &allatoms, map<int, int> &ZtoIndexMap); | 
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| 37 | void CalculateOrbitals(const std::vector<atom *> &allatoms); | 
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| 38 |  | 
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| 39 | class StructParallelization { | 
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| 40 | public: | 
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| 41 | StructParallelization(); | 
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| 42 | ~StructParallelization(); | 
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| 43 |  | 
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| 44 | int ProcPEGamma; | 
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| 45 | int ProcPEPsi; | 
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| 46 | } Parallelization; | 
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| 47 |  | 
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| 48 | /* | 
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| 49 | * Contains all the paths and names | 
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| 50 | */ | 
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| 51 | class StructPaths { | 
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| 52 | public: | 
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| 53 | StructPaths(); | 
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| 54 | ~StructPaths(); | 
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| 55 |  | 
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| 56 | char *databasepath; | 
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| 57 | char *configname; | 
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| 58 | char *mainname; | 
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| 59 | char *defaultpath; | 
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| 60 | char *pseudopotpath; | 
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| 61 | } Paths; | 
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| 62 |  | 
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| 63 | /* | 
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| 64 | * Contains all Do/Don't switches | 
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| 65 | */ | 
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| 66 | class StructSwitches { | 
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| 67 | public: | 
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| 68 | StructSwitches(); | 
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| 69 | ~StructSwitches(); | 
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| 70 |  | 
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| 71 | int DoConstrainedMD; | 
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| 72 | int DoOutVis; | 
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| 73 | int DoOutMes; | 
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| 74 | int DoOutNICS; | 
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| 75 | int DoOutOrbitals; | 
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| 76 | int DoOutCurrent; | 
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| 77 | int DoFullCurrent; | 
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| 78 | int DoPerturbation; | 
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| 79 | int DoWannier; | 
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| 80 | } Switches; | 
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| 81 |  | 
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| 82 | /* | 
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| 83 | * Contains parameters regarding localization of orbitals or magnetic perturbation | 
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| 84 | */ | 
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| 85 | class StructLocalizedOrbitals { | 
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| 86 | public: | 
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| 87 | StructLocalizedOrbitals(); | 
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| 88 | ~StructLocalizedOrbitals(); | 
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| 89 |  | 
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| 90 | int CommonWannier; | 
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| 91 | double SawtoothStart; | 
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| 92 | int VectorPlane; | 
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| 93 | double VectorCut; | 
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| 94 | int UseAddGramSch; | 
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| 95 | int Seed; | 
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| 96 | double EpsWannier; | 
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| 97 | } LocalizedOrbitals; | 
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| 98 |  | 
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| 99 | /* | 
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| 100 | * Contains all step count and other epsilon threshold parameters | 
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| 101 | */ | 
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| 102 | class StructStepCounts { | 
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| 103 | public: | 
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| 104 | StructStepCounts(); | 
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| 105 | ~StructStepCounts(); | 
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| 106 |  | 
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| 107 | int MaxMinStopStep; | 
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| 108 | int InitMaxMinStopStep; | 
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| 109 |  | 
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| 110 | int OutVisStep; | 
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| 111 | int OutSrcStep; | 
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| 112 | int MaxPsiStep; | 
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| 113 |  | 
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| 114 | int MaxOuterStep; | 
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| 115 |  | 
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| 116 | int MaxMinStep; | 
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| 117 | double RelEpsTotalEnergy; | 
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| 118 | double RelEpsKineticEnergy; | 
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| 119 | int MaxMinGapStopStep; | 
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| 120 | int MaxInitMinStep; | 
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| 121 | double InitRelEpsTotalEnergy; | 
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| 122 | double InitRelEpsKineticEnergy; | 
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| 123 | int InitMaxMinGapStopStep; | 
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| 124 | } StepCounts; | 
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| 125 |  | 
|---|
| 126 | /* | 
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| 127 | * Contains all parameters specific to the plane wave basis set | 
|---|
| 128 | */ | 
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| 129 | class StructPlaneWaveSpecifics { | 
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| 130 | public: | 
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| 131 | StructPlaneWaveSpecifics(); | 
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| 132 | ~StructPlaneWaveSpecifics(); | 
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| 133 |  | 
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| 134 | int PsiType; | 
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| 135 | int MaxPsiDouble; | 
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| 136 | int PsiMaxNoUp; | 
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| 137 | int PsiMaxNoDown; | 
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| 138 | double ECut; | 
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| 139 | int MaxLevel; | 
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| 140 | int RiemannTensor; | 
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| 141 | int LevRFactor; | 
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| 142 | int RiemannLevel; | 
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| 143 | int Lev0Factor; | 
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| 144 | int RTActualUse; | 
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| 145 | int AddPsis; | 
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| 146 | double RCut; | 
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| 147 | } PlaneWaveSpecifics; | 
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| 148 |  | 
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| 149 | bool FastParsing; | 
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| 150 |  | 
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| 151 | double Deltat; | 
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| 152 | int IsAngstroem; | 
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| 153 | int RelativeCoord; | 
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| 154 | int StructOpt; | 
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| 155 | int MaxTypes; | 
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| 156 | string basis; | 
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| 157 | }; | 
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| 158 |  | 
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| 159 | #endif /* PCPPARSER_HPP_ */ | 
|---|
       
      
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