Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
        
          | 
            Last change
 on this file since 3738f0 was             56f73b, checked in by Frederik Heber <heber@…>, 15 years ago           | 
        
        
          | 
             
Added config.h also to all header files, code check test ascertain this in the future. 
 
- as we want to use config.h to pass stuff such as MEMDEBUG, NDEBUG,
LOG_OBSERVER, we have to make sure that it is present in each and every
file.
 - split up CodeChecks/testsuite.at: each test has its own .at file.
  
           | 
        
        
          
            
              - 
Property                 mode
 set to                 
100644
               
             
           | 
        
        
          | 
            File size:
            3.1 KB
           | 
        
      
      
| Rev | Line |   | 
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| [43dad6] | 1 | /*
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 | 2 |  * PcpParser.hpp
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 | 3 |  *
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 | 4 |  *  Created on: 12.06.2010
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 | 5 |  *      Author: heber
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 | 6 |  */
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 | 7 | 
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 | 8 | #ifndef PCPPARSER_HPP_
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 | 9 | #define PCPPARSER_HPP_
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 | 10 | 
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| [56f73b] | 11 | // include config.h
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 | 12 | #ifdef HAVE_CONFIG_H
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 | 13 | #include <config.h>
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 | 14 | #endif
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 | 15 | 
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 | 16 | 
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| [986ed3] | 17 | #include <iosfwd>
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| [650ca8c] | 18 | #include "Parser/FormatParser.hpp"
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| [43dad6] | 19 | 
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 | 20 | /**
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 | 21 |  * Parser for PCP config files.
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 | 22 |  */
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 | 23 | class PcpParser : public FormatParser {
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 | 24 | public:
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 | 25 |   PcpParser();
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 | 26 |   ~PcpParser();
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 | 27 |   void load(std::istream* file);
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| [73916f] | 28 |   void save(std::ostream* file, const std::vector<atom *> &atoms);
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| [43dad6] | 29 | 
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| [1b2d30] | 30 |   bool operator==(const PcpParser& b) const;
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 | 31 | 
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| [43dad6] | 32 | private:
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 | 33 | 
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 | 34 |   void ParseThermostats(class ConfigFileBuffer * const fb);
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| [73916f] | 35 |   void OutputAtoms(ostream *file, const std::vector<atom *> &allatoms, map<int, int> &ZtoIndexMap);
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 | 36 |   void OutputElements(ostream *file, const std::vector<atom *> &allatoms, map<int, int> &ZtoIndexMap);
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 | 37 |   void CalculateOrbitals(const std::vector<atom *> &allatoms);
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| [43dad6] | 38 | 
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| [97b825] | 39 |   class StructParallelization {
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 | 40 |   public:
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 | 41 |     StructParallelization();
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 | 42 |     ~StructParallelization();
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 | 43 | 
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| [43dad6] | 44 |     int ProcPEGamma;
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 | 45 |     int ProcPEPsi;
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 | 46 |   } Parallelization;
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 | 47 | 
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 | 48 |   /*
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 | 49 |    * Contains all the paths and names
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 | 50 |    */
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| [97b825] | 51 |   class StructPaths {
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 | 52 |   public:
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 | 53 |     StructPaths();
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 | 54 |     ~StructPaths();
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 | 55 | 
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| [43dad6] | 56 |     char *databasepath;
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 | 57 |     char *configname;
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 | 58 |     char *mainname;
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 | 59 |     char *defaultpath;
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 | 60 |     char *pseudopotpath;
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 | 61 |   } Paths;
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 | 62 | 
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 | 63 |   /*
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 | 64 |    * Contains all Do/Don't switches
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 | 65 |    */
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| [97b825] | 66 |   class StructSwitches {
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 | 67 |   public:
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 | 68 |     StructSwitches();
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 | 69 |     ~StructSwitches();
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 | 70 | 
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| [43dad6] | 71 |     int DoConstrainedMD;
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 | 72 |     int DoOutVis;
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 | 73 |     int DoOutMes;
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 | 74 |     int DoOutNICS;
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 | 75 |     int DoOutOrbitals;
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 | 76 |     int DoOutCurrent;
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 | 77 |     int DoFullCurrent;
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 | 78 |     int DoPerturbation;
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 | 79 |     int DoWannier;
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 | 80 |   } Switches;
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 | 81 | 
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 | 82 |   /*
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 | 83 |    * Contains parameters regarding localization of orbitals or magnetic perturbation
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 | 84 |    */
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| [97b825] | 85 |   class StructLocalizedOrbitals {
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 | 86 |   public:
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 | 87 |     StructLocalizedOrbitals();
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 | 88 |     ~StructLocalizedOrbitals();
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 | 89 | 
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| [43dad6] | 90 |     int CommonWannier;
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 | 91 |     double SawtoothStart;
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 | 92 |     int VectorPlane;
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 | 93 |     double VectorCut;
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 | 94 |     int UseAddGramSch;
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 | 95 |     int Seed;
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 | 96 |     double EpsWannier;
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 | 97 |   } LocalizedOrbitals;
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 | 98 | 
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 | 99 |   /*
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 | 100 |    * Contains all step count and other epsilon threshold parameters
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 | 101 |    */
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| [97b825] | 102 |   class StructStepCounts {
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 | 103 |   public:
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 | 104 |     StructStepCounts();
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 | 105 |     ~StructStepCounts();
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 | 106 | 
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| [43dad6] | 107 |     int MaxMinStopStep;
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 | 108 |     int InitMaxMinStopStep;
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 | 109 | 
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 | 110 |     int OutVisStep;
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 | 111 |     int OutSrcStep;
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 | 112 |     int MaxPsiStep;
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 | 113 | 
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 | 114 |     int MaxOuterStep;
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 | 115 | 
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 | 116 |     int MaxMinStep;
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 | 117 |     double RelEpsTotalEnergy;
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 | 118 |     double RelEpsKineticEnergy;
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 | 119 |     int MaxMinGapStopStep;
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 | 120 |     int MaxInitMinStep;
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 | 121 |     double InitRelEpsTotalEnergy;
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 | 122 |     double InitRelEpsKineticEnergy;
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 | 123 |     int InitMaxMinGapStopStep;
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 | 124 |   } StepCounts;
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 | 125 | 
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 | 126 |   /*
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 | 127 |    * Contains all parameters specific to the plane wave basis set
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 | 128 |    */
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| [97b825] | 129 |   class StructPlaneWaveSpecifics {
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 | 130 |   public:
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 | 131 |     StructPlaneWaveSpecifics();
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 | 132 |     ~StructPlaneWaveSpecifics();
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 | 133 | 
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| [43dad6] | 134 |     int PsiType;
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 | 135 |     int MaxPsiDouble;
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 | 136 |     int PsiMaxNoUp;
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 | 137 |     int PsiMaxNoDown;
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 | 138 |     double ECut;
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 | 139 |     int MaxLevel;
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 | 140 |     int RiemannTensor;
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 | 141 |     int LevRFactor;
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 | 142 |     int RiemannLevel;
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 | 143 |     int Lev0Factor;
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 | 144 |     int RTActualUse;
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 | 145 |     int AddPsis;
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 | 146 |     double RCut;
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 | 147 |   } PlaneWaveSpecifics;
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 | 148 | 
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 | 149 |   bool FastParsing;
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 | 150 | 
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 | 151 |   double Deltat;
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 | 152 |   int IsAngstroem;
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 | 153 |   int RelativeCoord;
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 | 154 |   int StructOpt;
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 | 155 |   int MaxTypes;
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 | 156 |   string basis;
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 | 157 | };
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 | 158 | 
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 | 159 | #endif /* PCPPARSER_HPP_ */
 | 
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