| [ee50c1] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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| [0aa122] | 4 | * Copyright (C)  2010-2012 University of Bonn. All rights reserved. | 
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| [ee50c1] | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details. | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | /* | 
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|  | 9 | * FormatParser_Parameters.cpp | 
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|  | 10 | * | 
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|  | 11 | *  Created on: Sep 30, 2011 | 
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|  | 12 | *      Author: heber | 
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|  | 13 | */ | 
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|  | 14 |  | 
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|  | 15 | // include config.h | 
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|  | 16 | #ifdef HAVE_CONFIG_H | 
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|  | 17 | #include <config.h> | 
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|  | 18 | #endif | 
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|  | 19 |  | 
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|  | 20 | #include "CodePatterns/MemDebug.hpp" | 
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|  | 21 |  | 
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| [7f570c] | 22 | #include <iostream> | 
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|  | 23 | #include <boost/algorithm/string.hpp> | 
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|  | 24 | #include <boost/tokenizer.hpp> | 
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|  | 25 | #include <sstream> | 
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| [ee50c1] | 26 | #include <string> | 
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|  | 27 |  | 
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| [7f570c] | 28 | #include "CodePatterns/Assert.hpp" | 
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|  | 29 | #include "CodePatterns/Log.hpp" | 
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|  | 30 |  | 
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| [ee50c1] | 31 | #include "Parameters/Parameter.hpp" | 
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|  | 32 | #include "FormatParser_Parameters.hpp" | 
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|  | 33 |  | 
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|  | 34 | /** Constructor of class FormatParser_Parameters. | 
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|  | 35 | * | 
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|  | 36 | * \note we make sure that storage is always present | 
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|  | 37 | * | 
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|  | 38 | */ | 
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|  | 39 | FormatParser_Parameters::FormatParser_Parameters() : | 
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|  | 40 | storage(new ParameterStorage) | 
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|  | 41 | {} | 
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|  | 42 |  | 
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|  | 43 | /** Copy constructor of class FormatParser_Parameters. | 
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|  | 44 | * | 
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|  | 45 | * @param _parameters instance to copy from | 
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|  | 46 | */ | 
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|  | 47 | FormatParser_Parameters::FormatParser_Parameters(const FormatParser_Parameters &_parameters) : | 
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|  | 48 | storage(new ParameterStorage(*_parameters.storage)) | 
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|  | 49 | {} | 
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|  | 50 |  | 
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|  | 51 |  | 
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|  | 52 | /** Destructor of class FormatParser_Parameters. | 
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|  | 53 | * | 
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|  | 54 | */ | 
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|  | 55 | FormatParser_Parameters::~FormatParser_Parameters() | 
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|  | 56 | { | 
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|  | 57 | delete storage; | 
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|  | 58 | } | 
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|  | 59 |  | 
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|  | 60 | /** Implements the Parameter::clone() function. | 
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|  | 61 | * | 
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|  | 62 | * @return another instance with an identical copy of each parameter in \a storage | 
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|  | 63 | */ | 
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|  | 64 | FormatParser_Parameters* FormatParser_Parameters::clone() const | 
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|  | 65 | { | 
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|  | 66 | return (new FormatParser_Parameters(*this)); | 
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|  | 67 | } | 
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|  | 68 |  | 
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|  | 69 | /** This makes this instance a clone of \a _instance. | 
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|  | 70 | * | 
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|  | 71 | * \note This is basically the other way round to clone(). | 
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|  | 72 | * | 
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|  | 73 | * @param _instance instance to clone from | 
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|  | 74 | */ | 
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|  | 75 | void FormatParser_Parameters::makeClone(const FormatParser_Parameters &_instance) | 
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|  | 76 | { | 
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|  | 77 | // we simply remove storage | 
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|  | 78 | delete storage; | 
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|  | 79 | // and clone the one from _instance | 
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|  | 80 | storage = new ParameterStorage(*_instance.storage); | 
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|  | 81 | } | 
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|  | 82 |  | 
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|  | 83 | /** Adds a parameter to \a storage. | 
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|  | 84 | * | 
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|  | 85 | * This just eases use, saves some typing and is more clear as to what is done. | 
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|  | 86 | * | 
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|  | 87 | * @param instance parameter to add | 
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|  | 88 | */ | 
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|  | 89 | void FormatParser_Parameters::appendParameter(Parameter *instance) | 
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|  | 90 | { | 
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|  | 91 | storage->registerInstance(instance); | 
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|  | 92 | } | 
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|  | 93 |  | 
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|  | 94 | /** Checks for presence of a parameter in \a storage. | 
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|  | 95 | * | 
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|  | 96 | * This just eases use, saves some typing and is more clear as to what is done. | 
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|  | 97 | * | 
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|  | 98 | * @return true - parameter by this \a _name is present in storage, false - else | 
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|  | 99 | */ | 
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|  | 100 | bool FormatParser_Parameters::haveParameter(const std::string &_name) const | 
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|  | 101 | { | 
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|  | 102 | return storage->isPresentByName(_name); | 
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|  | 103 | } | 
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|  | 104 |  | 
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|  | 105 | /** Gets a parameter from \a storage. | 
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|  | 106 | * | 
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|  | 107 | * This just eases use, saves some typing and is more clear as to what is done. | 
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|  | 108 | * | 
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|  | 109 | * @return pointer to instance with this \a _name | 
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|  | 110 | */ | 
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|  | 111 | Parameter *FormatParser_Parameters::getParameter(const std::string &_name) const | 
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|  | 112 | { | 
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|  | 113 | return storage->getByName(_name); | 
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|  | 114 | } | 
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| [7f570c] | 115 |  | 
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|  | 116 | /** Output operator for the contents of FormatParser_Parameters::params. | 
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|  | 117 | * | 
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|  | 118 | * @param ost output stream | 
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|  | 119 | * @param params reference to FormatParser_Parameters containing params. | 
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|  | 120 | * @return reference to output stream for concatenation | 
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|  | 121 | */ | 
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|  | 122 | std::ostream & operator << (std::ostream& ost, const FormatParser_Parameters ¶ms) | 
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|  | 123 | { | 
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|  | 124 | // this is ugly, but with boost::any to safeguard const-ness is plain impossible | 
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|  | 125 | std::ostringstream output; | 
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|  | 126 | ASSERT(params.storage != NULL, | 
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|  | 127 | "operator<<(FormatParser_Parameters) - storage is NULL."); | 
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|  | 128 | for (ParameterStorage::const_iterator iter = params.storage->getBeginIter(); | 
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|  | 129 | iter != params.storage->getEndIter(); | 
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|  | 130 | ++iter) | 
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| [41d023] | 131 | if (!iter->second->get().empty()) | 
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|  | 132 | output << iter->first <<  "=" << iter->second->get() << ";"; | 
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| [7f570c] | 133 | ost << output.str(); | 
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|  | 134 | return ost; | 
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|  | 135 | } | 
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|  | 136 |  | 
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|  | 137 | /** Input operator for a list of parameters to place into \a params. | 
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|  | 138 | * | 
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|  | 139 | * @param ist input stream | 
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|  | 140 | * @param params parameters to parse into | 
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|  | 141 | * @return input stream for concatenation | 
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|  | 142 | */ | 
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|  | 143 | std::istream & operator >> (std::istream& ist, FormatParser_Parameters ¶ms) | 
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|  | 144 | { | 
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|  | 145 | typedef boost::tokenizer<boost::char_separator<char> > | 
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|  | 146 | tokenizer; | 
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|  | 147 | boost::char_separator<char> semicolonsep(";"); | 
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|  | 148 | boost::char_separator<char> equalitysep("="); | 
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|  | 149 | boost::char_separator<char> ticksep("\""); | 
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|  | 150 | std::string line; | 
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|  | 151 | std::getline( ist, line ); | 
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| [47d041] | 152 | //LOG(0, "INFO: full line of parameters is '" << line << "'"); | 
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| [7f570c] | 153 | tokenizer tokens(line, semicolonsep); | 
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|  | 154 | ASSERT(tokens.begin() != tokens.end(), | 
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|  | 155 | "operator<< on FormatParser_Parameters - empty string, need at least ';' in line "+line+"!"); | 
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|  | 156 | for (tokenizer::iterator tok_iter = tokens.begin(); | 
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|  | 157 | tok_iter != tokens.end(); ++tok_iter) { | 
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|  | 158 | //LOG(2, "INFO: (key,value) pair is: " << *tok_iter << "."); | 
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|  | 159 | tokenizer paramtokens(*tok_iter, equalitysep); | 
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|  | 160 | if (paramtokens.begin() != paramtokens.end()) { | 
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|  | 161 | tokenizer::iterator tok_paramiter = paramtokens.begin(); | 
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|  | 162 | ASSERT(tok_paramiter != paramtokens.end(), | 
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|  | 163 | "operator<< on FormatParser_Parameters - missing value before ' =' in token "+*tok_iter+"!"); | 
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| [41d023] | 164 | tokenizer::iterator tok_valueiter = tok_paramiter; | 
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|  | 165 | tokenizer::iterator tok_checkiter = ++tok_valueiter; | 
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| [7f570c] | 166 | ASSERT(tok_valueiter != paramtokens.end(), | 
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|  | 167 | "operator<< on FormatParser_Parameters - missing value after ' =' in token "+*tok_iter+"!"); | 
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| [41d023] | 168 | ++tok_checkiter; | 
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| [7f570c] | 169 | ASSERT(tok_checkiter == paramtokens.end(), | 
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|  | 170 | "operator<< on FormatParser_Parameters - still more tokens after ' =' in token "+*tok_iter+":" | 
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|  | 171 | +*tok_checkiter+"!"); | 
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| [41d023] | 172 | LOG(3, "INFO: key is '" << *tok_paramiter << "', value is '" << *tok_valueiter << "'."); | 
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|  | 173 | // TODO: throw exception instead of ASSERT | 
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| [7f570c] | 174 | std::string key(*tok_paramiter); | 
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|  | 175 | std::string value(*tok_valueiter); | 
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|  | 176 | boost::trim(key); | 
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|  | 177 | boost::trim(value); | 
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|  | 178 | tokenizer ticklesstokens(value, ticksep); | 
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|  | 179 | ASSERT(ticklesstokens.begin() != ticklesstokens.end(), | 
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|  | 180 | "operator<< on FormatParser_Parameters - no tokens present after removing ticks in token "+*tok_valueiter+"!"); | 
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|  | 181 | std::stringstream valuestream(*(ticklesstokens.begin())); | 
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|  | 182 | //LOG(2, "INFO: Token pair is " << key << "," << valuestream.str()); | 
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|  | 183 |  | 
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|  | 184 | // TODO: throw exception instead of DoeLog() | 
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|  | 185 | ASSERT(params.haveParameter(key), | 
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|  | 186 | "operator >> on FormatParser_Parameters - unknown parameter name '" | 
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|  | 187 | +key+"' with value "+valuestream.str()+"!"); | 
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|  | 188 | if (params.haveParameter(key)) { | 
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|  | 189 | Parameter *instance = params.getParameter(key); | 
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|  | 190 | instance->set(valuestream.str()); | 
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|  | 191 | } | 
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|  | 192 | } else { | 
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|  | 193 | ist.setstate(std::ios::eofbit); | 
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|  | 194 | } | 
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|  | 195 | } | 
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|  | 196 | return ist; | 
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|  | 197 | } | 
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