| [bcf653] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2010 University of Bonn. All rights reserved.
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 | 5 |  * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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 | 6 |  */
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 | 7 | 
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| [6f646d] | 8 | /*
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 | 9 |  * Line.cpp
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 | 10 |  *
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 | 11 |  *  Created on: Apr 30, 2010
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 | 12 |  *      Author: crueger
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 | 13 |  */
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 | 14 | 
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| [bf3817] | 15 | // include config.h
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 | 16 | #ifdef HAVE_CONFIG_H
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 | 17 | #include <config.h>
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 | 18 | #endif
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 | 19 | 
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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| [112b09] | 21 | 
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| [57f243] | 22 | #include "LinearAlgebra/Line.hpp"
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| [6f646d] | 23 | 
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 | 24 | #include <cmath>
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| [a439e5] | 25 | #include <iostream>
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| [6f646d] | 26 | 
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| [57f243] | 27 | #include "LinearAlgebra/Vector.hpp"
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| [ad011c] | 28 | #include "CodePatterns/Log.hpp"
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 | 29 | #include "CodePatterns/Verbose.hpp"
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| [0d4424] | 30 | #include "LinearAlgebra/MatrixContent.hpp"
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| [ad011c] | 31 | #include "CodePatterns/Info.hpp"
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| [45ef76] | 32 | #include "Exceptions/LinearDependenceException.hpp"
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 | 33 | #include "Exceptions/SkewException.hpp"
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| [57f243] | 34 | #include "LinearAlgebra/Plane.hpp"
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| [6f646d] | 35 | 
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| [45ef76] | 36 | using namespace std;
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 | 37 | 
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 | 38 | Line::Line(const Vector &_origin, const Vector &_direction) :
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| [6f646d] | 39 |   direction(new Vector(_direction))
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 | 40 | {
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 | 41 |   direction->Normalize();
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| [45ef76] | 42 |   origin.reset(new Vector(_origin.partition(*direction).second));
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| [6f646d] | 43 | }
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 | 44 | 
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| [45ef76] | 45 | Line::Line(const Line &src) :
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 | 46 |   origin(new Vector(*src.origin)),
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 | 47 |   direction(new Vector(*src.direction))
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 | 48 | {}
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 | 49 | 
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| [6f646d] | 50 | Line::~Line()
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 | 51 | {}
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 | 52 | 
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| [41da13] | 53 | Line &Line::operator=(const Line& rhs){
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 | 54 |   if(this!=&rhs){
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 | 55 |     origin.reset(new Vector(*rhs.origin));
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 | 56 |     direction.reset(new Vector(*rhs.direction));
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 | 57 |   }
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 | 58 |   return *this;
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 | 59 | }
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 | 60 | 
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| [6f646d] | 61 | 
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 | 62 | double Line::distance(const Vector &point) const{
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| [45ef76] | 63 |   // get any vector from line to point
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 | 64 |   Vector helper = point - *origin;
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 | 65 |   // partition this vector along direction
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 | 66 |   // the residue points from the line to the point
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 | 67 |   return helper.partition(*direction).second.Norm();
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| [6f646d] | 68 | }
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 | 69 | 
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 | 70 | Vector Line::getClosestPoint(const Vector &point) const{
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| [45ef76] | 71 |   // get any vector from line to point
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 | 72 |   Vector helper = point - *origin;
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 | 73 |   // partition this vector along direction
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 | 74 |   // add only the part along the direction
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 | 75 |   return *origin + helper.partition(*direction).first;
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 | 76 | }
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 | 77 | 
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 | 78 | Vector Line::getDirection() const{
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 | 79 |   return *direction;
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 | 80 | }
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 | 81 | 
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 | 82 | Vector Line::getOrigin() const{
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 | 83 |   return *origin;
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 | 84 | }
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 | 85 | 
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 | 86 | vector<Vector> Line::getPointsOnLine() const{
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 | 87 |   vector<Vector> res;
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 | 88 |   res.reserve(2);
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 | 89 |   res.push_back(*origin);
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 | 90 |   res.push_back(*origin+*direction);
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 | 91 |   return res;
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 | 92 | }
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 | 93 | 
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| [643e76] | 94 | /** Calculates the intersection of the two lines that are both on the same plane.
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 | 95 |  * This is taken from Weisstein, Eric W. "Line-Line Intersection." From MathWorld--A Wolfram Web Resource. http://mathworld.wolfram.com/Line-LineIntersection.html
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 | 96 |  * \param *out output stream for debugging
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 | 97 |  * \param *Line1a first vector of first line
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 | 98 |  * \param *Line1b second vector of first line
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 | 99 |  * \param *Line2a first vector of second line
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 | 100 |  * \param *Line2b second vector of second line
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 | 101 |  * \return true - \a this will contain the intersection on return, false - lines are parallel
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 | 102 |  */
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| [45ef76] | 103 | Vector Line::getIntersection(const Line& otherLine) const{
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 | 104 |   Info FunctionInfo(__func__);
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 | 105 | 
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 | 106 |   pointset line1Points = getPointsOnLine();
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 | 107 | 
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 | 108 |   Vector Line1a = line1Points[0];
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 | 109 |   Vector Line1b = line1Points[1];
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 | 110 | 
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 | 111 |   pointset line2Points = otherLine.getPointsOnLine();
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 | 112 | 
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 | 113 |   Vector Line2a = line2Points[0];
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 | 114 |   Vector Line2b = line2Points[1];
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 | 115 | 
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 | 116 |   Vector res;
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 | 117 | 
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| [0d4424] | 118 |   auto_ptr<MatrixContent> M = auto_ptr<MatrixContent>(new MatrixContent(4,4));
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| [45ef76] | 119 | 
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| [0d4424] | 120 |   M->setValue(1.);
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| [45ef76] | 121 |   for (int i=0;i<3;i++) {
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| [0d4424] | 122 |     M->set(0, i, Line1a[i]);
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 | 123 |     M->set(1, i, Line1b[i]);
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 | 124 |     M->set(2, i, Line2a[i]);
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 | 125 |     M->set(3, i, Line2b[i]);
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| [45ef76] | 126 |   }
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 | 127 | 
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 | 128 |   //Log() << Verbose(1) << "Coefficent matrix is:" << endl;
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 | 129 |   //for (int i=0;i<4;i++) {
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 | 130 |   //  for (int j=0;j<4;j++)
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 | 131 |   //    cout << "\t" << M->Get(i,j);
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 | 132 |   //  cout << endl;
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 | 133 |   //}
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 | 134 |   if (fabs(M->Determinant()) > MYEPSILON) {
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 | 135 |     Log() << Verbose(1) << "Determinant of coefficient matrix is NOT zero." << endl;
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 | 136 |     throw SkewException(__FILE__,__LINE__);
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 | 137 |   }
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 | 138 | 
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 | 139 |   Log() << Verbose(1) << "INFO: Line1a = " << Line1a << ", Line1b = " << Line1b << ", Line2a = " << Line2a << ", Line2b = " << Line2b << "." << endl;
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 | 140 | 
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 | 141 | 
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 | 142 |   // constuct a,b,c
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 | 143 |   Vector a = Line1b - Line1a;
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 | 144 |   Vector b = Line2b - Line2a;
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 | 145 |   Vector c = Line2a - Line1a;
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 | 146 |   Vector d = Line2b - Line1b;
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 | 147 |   Log() << Verbose(1) << "INFO: a = " << a << ", b = " << b << ", c = " << c << "." << endl;
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 | 148 |   if ((a.NormSquared() < MYEPSILON) || (b.NormSquared() < MYEPSILON)) {
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 | 149 |    res.Zero();
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 | 150 |    Log() << Verbose(1) << "At least one of the lines is ill-defined, i.e. offset equals second vector." << endl;
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 | 151 |    throw LinearDependenceException(__FILE__,__LINE__);
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 | 152 |   }
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 | 153 | 
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 | 154 |   // check for parallelity
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 | 155 |   Vector parallel;
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 | 156 |   double factor = 0.;
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 | 157 |   if (fabs(a.ScalarProduct(b)*a.ScalarProduct(b)/a.NormSquared()/b.NormSquared() - 1.) < MYEPSILON) {
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 | 158 |     parallel = Line1a - Line2a;
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 | 159 |     factor = parallel.ScalarProduct(a)/a.Norm();
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 | 160 |     if ((factor >= -MYEPSILON) && (factor - 1. < MYEPSILON)) {
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 | 161 |       res = Line2a;
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 | 162 |       Log() << Verbose(1) << "Lines conincide." << endl;
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 | 163 |       return res;
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 | 164 |     } else {
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 | 165 |       parallel = Line1a - Line2b;
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 | 166 |       factor = parallel.ScalarProduct(a)/a.Norm();
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 | 167 |       if ((factor >= -MYEPSILON) && (factor - 1. < MYEPSILON)) {
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 | 168 |         res = Line2b;
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 | 169 |         Log() << Verbose(1) << "Lines conincide." << endl;
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 | 170 |         return res;
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 | 171 |       }
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 | 172 |     }
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 | 173 |     Log() << Verbose(1) << "Lines are parallel." << endl;
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 | 174 |     res.Zero();
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 | 175 |     throw LinearDependenceException(__FILE__,__LINE__);
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 | 176 |   }
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 | 177 | 
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 | 178 |   // obtain s
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 | 179 |   double s;
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 | 180 |   Vector temp1, temp2;
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 | 181 |   temp1 = c;
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 | 182 |   temp1.VectorProduct(b);
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 | 183 |   temp2 = a;
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 | 184 |   temp2.VectorProduct(b);
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 | 185 |   Log() << Verbose(1) << "INFO: temp1 = " << temp1 << ", temp2 = " << temp2 << "." << endl;
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 | 186 |   if (fabs(temp2.NormSquared()) > MYEPSILON)
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 | 187 |     s = temp1.ScalarProduct(temp2)/temp2.NormSquared();
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 | 188 |   else
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 | 189 |     s = 0.;
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 | 190 |   Log() << Verbose(1) << "Factor s is " << temp1.ScalarProduct(temp2) << "/" << temp2.NormSquared() << " = " << s << "." << endl;
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 | 191 | 
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 | 192 |   // construct intersection
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 | 193 |   res = a;
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 | 194 |   res.Scale(s);
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 | 195 |   res += Line1a;
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 | 196 |   Log() << Verbose(1) << "Intersection is at " << res << "." << endl;
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 | 197 | 
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 | 198 |   return res;
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 | 199 | }
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 | 200 | 
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| [42a101] | 201 | /** Rotates the vector by an angle of \a alpha around this line.
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 | 202 |  * \param rhs Vector to rotate
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 | 203 |  * \param alpha rotation angle in radian
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 | 204 |  */
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 | 205 | Vector Line::rotateVector(const Vector &rhs, double alpha) const{
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 | 206 |   Vector helper = rhs;
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 | 207 | 
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 | 208 |   // translate the coordinate system so that the line goes through (0,0,0)
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 | 209 |   helper -= *origin;
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 | 210 | 
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 | 211 |   // partition the vector into a part that gets rotated and a part that lies along the line
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 | 212 |   pair<Vector,Vector> parts = helper.partition(*direction);
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 | 213 | 
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 | 214 |   // we just keep anything that is along the axis
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 | 215 |   Vector res = parts.first;
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 | 216 | 
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 | 217 |   // the rest has to be rotated
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 | 218 |   Vector a = parts.second;
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 | 219 |   // we only have to do the rest, if we actually could partition the vector
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 | 220 |   if(!a.IsZero()){
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 | 221 |     // construct a vector that is orthogonal to a and direction and has length |a|
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 | 222 |     Vector y = a;
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 | 223 |     // direction is normalized, so the result has length |a|
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 | 224 |     y.VectorProduct(*direction);
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 | 225 | 
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 | 226 |     res += cos(alpha) * a + sin(alpha) * y;
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 | 227 |   }
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 | 228 | 
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 | 229 |   // translate the coordinate system back
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 | 230 |   res += *origin;
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 | 231 |   return res;
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 | 232 | }
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 | 233 | 
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| [b59648] | 234 | Line Line::rotateLine(const Line &rhs, double alpha) const{
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 | 235 |   Vector lineOrigin = rotateVector(rhs.getOrigin(),alpha);
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 | 236 |   Vector helper = rhs.getDirection();
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 | 237 |   // rotate the direction without considering the ofset
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 | 238 |   pair<Vector,Vector> parts = helper.partition(*direction);
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 | 239 |   Vector lineDirection = parts.first;
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 | 240 |   Vector a = parts.second;
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 | 241 |   if(!a.IsZero()){
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 | 242 |     // construct a vector that is orthogonal to a and direction and has length |a|
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 | 243 |     Vector y = a;
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 | 244 |     // direction is normalized, so the result has length |a|
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 | 245 |     y.VectorProduct(*direction);
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 | 246 | 
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 | 247 |     lineDirection += cos(alpha) * a + sin(alpha) * y;
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 | 248 |   }
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 | 249 |   return Line(lineOrigin,lineDirection);
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 | 250 | }
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 | 251 | 
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| [69baa4] | 252 | Plane Line::rotatePlane(const Plane &rhs, double alpha) const{
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 | 253 |   vector<Vector> points = rhs.getPointsOnPlane();
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 | 254 |   transform(points.begin(),
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 | 255 |             points.end(),
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 | 256 |             points.begin(),
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 | 257 |             boost::bind(&Line::rotateVector,this,_1,alpha));
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 | 258 |   return Plane(points[0],points[1],points[2]);
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 | 259 | }
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 | 260 | 
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| [5589858] | 261 | Plane Line::getOrthogonalPlane(const Vector &origin) const{
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 | 262 |   return Plane(getDirection(),origin);
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 | 263 | }
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 | 264 | 
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| [f932b7] | 265 | std::vector<Vector> Line::getSphereIntersections() const{
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 | 266 |   std::vector<Vector> res;
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 | 267 | 
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 | 268 |   // line is kept in normalized form, so we can skip a lot of calculations
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 | 269 |   double discriminant = 1-origin->NormSquared();
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 | 270 |   // we might have 2, 1 or 0 solutions, depending on discriminant
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 | 271 |   if(discriminant>=0){
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 | 272 |     if(discriminant==0){
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 | 273 |       res.push_back(*origin);
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 | 274 |     }
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 | 275 |     else{
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 | 276 |       Vector helper = sqrt(discriminant)*(*direction);
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 | 277 |       res.push_back(*origin+helper);
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 | 278 |       res.push_back(*origin-helper);
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 | 279 |     }
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 | 280 |   }
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 | 281 |   return res;
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 | 282 | }
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 | 283 | 
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| [6256f5] | 284 | LinePoint Line::getLinePoint(const Vector &point) const{
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 | 285 |   ASSERT(isContained(point),"Line point queried for point not on line");
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 | 286 |   Vector helper = point - (*origin);
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 | 287 |   double param = helper.ScalarProduct(*direction);
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 | 288 |   return LinePoint(*this,param);
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 | 289 | }
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 | 290 | 
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 | 291 | LinePoint Line::posEndpoint() const{
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 | 292 |   return LinePoint(*this, numeric_limits<double>::infinity());
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 | 293 | }
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 | 294 | LinePoint Line::negEndpoint() const{
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 | 295 |   return LinePoint(*this,-numeric_limits<double>::infinity());
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 | 296 | }
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 | 297 | 
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| [82cf79] | 298 | bool operator==(const Line &x,const Line &y){
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 | 299 |   return *x.origin == *y.origin && *x.direction == *y.direction;
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 | 300 | }
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 | 301 | 
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| [45ef76] | 302 | Line makeLineThrough(const Vector &x1, const Vector &x2){
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 | 303 |   if(x1==x2){
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 | 304 |     throw LinearDependenceException(__FILE__,__LINE__);
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 | 305 |   }
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 | 306 |   return Line(x1,x1-x2);
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| [6f646d] | 307 | }
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| [6256f5] | 308 | 
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 | 309 | /******************************** Points on the line ********************/
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 | 310 | 
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 | 311 | LinePoint::LinePoint(const LinePoint &src) :
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 | 312 |   line(src.line),param(src.param)
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 | 313 | {}
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 | 314 | 
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 | 315 | LinePoint::LinePoint(const Line &_line, double _param) :
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 | 316 |   line(_line),param(_param)
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 | 317 | {}
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 | 318 | 
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 | 319 | LinePoint& LinePoint::operator=(const LinePoint &src){
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| [40196a] | 320 |   line=src.line;
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| [6256f5] | 321 |   param=src.param;
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 | 322 |   return *this;
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 | 323 | }
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 | 324 | 
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 | 325 | Vector LinePoint::getPoint() const{
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 | 326 |   ASSERT(!isInfinite(),"getPoint() on infinite LinePoint called");
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 | 327 |   return (*line.origin)+param*(*line.direction);
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 | 328 | }
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 | 329 | 
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 | 330 | Line LinePoint::getLine() const{
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 | 331 |   return line;
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 | 332 | }
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 | 333 | 
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 | 334 | bool LinePoint::isInfinite() const{
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 | 335 |   return isPosInfinity() || isNegInfinity();
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 | 336 | }
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 | 337 | bool LinePoint::isPosInfinity() const{
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 | 338 |   return param == numeric_limits<double>::infinity();
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 | 339 | }
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 | 340 | bool LinePoint::isNegInfinity() const{
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 | 341 |   return param ==-numeric_limits<double>::infinity();
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 | 342 | }
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 | 343 | 
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 | 344 | bool operator==(const LinePoint &x, const LinePoint &y){
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 | 345 |   ASSERT(x.line==y.line,"Operation on two points of different lines");
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 | 346 |   return x.param == y.param;
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 | 347 | 
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 | 348 | }
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 | 349 | bool operator<(const LinePoint &x, const LinePoint &y){
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 | 350 |   ASSERT(x.line==y.line,"Operation on two points of different lines");
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 | 351 |   return x.param<y.param;
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 | 352 | }
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| [6c438f] | 353 | 
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| [e0ba10] | 354 | ostream& operator<<(ostream& ost, const Line& m)
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 | 355 | {
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 | 356 |   const Vector origin = m.getOrigin();
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 | 357 |   const Vector direction = m.getDirection();
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 | 358 |   ost << "(";
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 | 359 |   for (int i=0;i<NDIM;i++) {
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 | 360 |     ost << origin[i];
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 | 361 |     if (i != 2)
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 | 362 |       ost << ",";
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 | 363 |   }
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 | 364 |   ost << ") -> (";
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 | 365 |   for (int i=0;i<NDIM;i++) {
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 | 366 |     ost << direction[i];
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 | 367 |     if (i != 2)
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 | 368 |       ost << ",";
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 | 369 |   }
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 | 370 |   ost << ")";
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 | 371 |   return ost;
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 | 372 | };
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 | 373 | 
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