source: src/FunctionApproximation/unittests/ExtractorsUnitTest.cpp@ 67044a

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Last change on this file since 67044a was c7aac9, checked in by Frederik Heber <heber@…>, 9 years ago

FIX: TrainingData used charges instead of atomic numbers to recognize fragments.

  • this only works if we do not DoSampleValenceOnly. Otherwise charges are no longer directly associable with the atomic number of the nuclei.
  • Extractors::gatherAllSymmetricDistanceArguments now needs atomicnumbers instead of charges.
  • TESTFIX: needed to adapt ExtractorsUnitTest.
  • Property mode set to 100644
File size: 2.5 KB
Line 
1/*
2 * Project: MoleCuilder
3 * Description: creates and alters molecular systems
4 * Copyright (C) 2012 University of Bonn. All rights reserved.
5 *
6 *
7 * This file is part of MoleCuilder.
8 *
9 * MoleCuilder is free software: you can redistribute it and/or modify
10 * it under the terms of the GNU General Public License as published by
11 * the Free Software Foundation, either version 2 of the License, or
12 * (at your option) any later version.
13 *
14 * MoleCuilder is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 * GNU General Public License for more details.
18 *
19 * You should have received a copy of the GNU General Public License
20 * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
21 */
22
23/*
24 * ExtractorsUnitTest.cpp
25 *
26 * Created on: Oct 16, 2012
27 * Author: heber
28 */
29
30// include config.h
31#ifdef HAVE_CONFIG_H
32#include <config.h>
33#endif
34
35using namespace std;
36
37#include <cppunit/CompilerOutputter.h>
38#include <cppunit/extensions/TestFactoryRegistry.h>
39#include <cppunit/ui/text/TestRunner.h>
40
41#include "ExtractorsUnitTest.hpp"
42
43#include <boost/assign.hpp>
44
45#include "CodePatterns/Assert.hpp"
46
47#include "FunctionApproximation/Extractors.hpp"
48#include "Potentials/helpers.hpp"
49
50using namespace boost::assign;
51
52#ifdef HAVE_TESTRUNNER
53#include "UnitTestMain.hpp"
54#endif /*HAVE_TESTRUNNER*/
55
56/********************************************** Test classes **************************************/
57
58// Registers the fixture into the 'registry'
59CPPUNIT_TEST_SUITE_REGISTRATION( ExtractorsTest );
60
61
62void ExtractorsTest::setUp()
63{
64 // failing asserts should be thrown
65 ASSERT_DO(Assert::Throw);
66
67}
68
69
70void ExtractorsTest::tearDown()
71{
72}
73
74/** UnitTest for gatherAllSymmetricDistances()
75 */
76void ExtractorsTest::gatherAllSymmetricDistancesTest()
77{
78 // create positions
79 Fragment::positions_t positions;
80 Fragment::position_t pos(3, 0.);
81 for (double i = 0; i < 5; i+=1.) {
82 pos[0] = i;
83 positions.push_back(pos);
84 }
85
86 // create charges
87 Fragment::atomicnumbers_t atomicnumbers;
88 atomicnumbers += 6, 6, 1, 1, 1;
89
90 // create distances
91 FunctionModel::arguments_t args =
92 Extractors::gatherAllSymmetricDistances(positions, atomicnumbers, 0);
93 CPPUNIT_ASSERT_EQUAL( (size_t)(5*4/2), args.size() );
94
95 // check created args
96 for (size_t i=0; i< (5*4)/2; ++i)
97 CPPUNIT_ASSERT( (args[i].distance >= 0) && (args[i].distance <= 4));
98}
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