| 1 | /* | 
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| 2 | * Project: MoleCuilder | 
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| 3 | * Description: creates and alters molecular systems | 
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| 4 | * Copyright (C)  2012 University of Bonn. All rights reserved. | 
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| 5 | * Copyright (C)  2013 Frederik Heber. All rights reserved. | 
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| 6 | * | 
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| 7 | * | 
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| 8 | *   This file is part of MoleCuilder. | 
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| 9 | * | 
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| 10 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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| 11 | *    it under the terms of the GNU General Public License as published by | 
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| 12 | *    the Free Software Foundation, either version 2 of the License, or | 
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| 13 | *    (at your option) any later version. | 
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| 14 | * | 
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| 15 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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| 16 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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| 17 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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| 18 | *    GNU General Public License for more details. | 
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| 19 | * | 
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| 20 | *    You should have received a copy of the GNU General Public License | 
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| 21 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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| 22 | */ | 
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| 23 |  | 
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| 24 | /* | 
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| 25 | * IndexSetContainer.cpp | 
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| 26 | * | 
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| 27 | *  Created on: Aug 2, 2012 | 
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| 28 | *      Author: heber | 
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| 29 | */ | 
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| 30 |  | 
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| 31 |  | 
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| 32 | // include config.h | 
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| 33 | #ifdef HAVE_CONFIG_H | 
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| 34 | #include <config.h> | 
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| 35 | #endif | 
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| 36 |  | 
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| 37 | //#include "CodePatterns/MemDebug.hpp" | 
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| 38 |  | 
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| 39 | #include "IndexSetContainer.hpp" | 
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| 40 |  | 
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| 41 | #include <iterator> | 
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| 42 |  | 
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| 43 | #include "CodePatterns/Log.hpp" | 
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| 44 |  | 
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| 45 | #include "Fragmentation/Summation/IndexSet.hpp" | 
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| 46 | #include "Fragmentation/KeySetsContainer.hpp" | 
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| 47 |  | 
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| 48 | IndexSet::ptr IndexSetContainer::createSuperSet(const KeySetsContainer &_keysets) const | 
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| 49 | { | 
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| 50 | // create superset | 
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| 51 | IndexSet::ptr _AllIndices(new IndexSet); | 
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| 52 | for (KeySetsContainer::ArrayOfIntVectors::const_iterator iter = _keysets.KeySets.begin(); | 
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| 53 | iter != _keysets.KeySets.end(); ++iter) | 
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| 54 | for(KeySetsContainer::IntVector::const_iterator keyiter = (*iter).begin(); | 
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| 55 | keyiter != (*iter).end(); ++keyiter) { | 
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| 56 | if (*keyiter != -1) | 
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| 57 | _AllIndices->insert((Index_t)*keyiter); | 
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| 58 | } | 
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| 59 | LOG(2, "DEBUG: AllIndices is " << *_AllIndices << "."); | 
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| 60 |  | 
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| 61 | return _AllIndices; | 
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| 62 | } | 
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| 63 |  | 
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| 64 | IndexSet::ptr IndexSetContainer::createSuperSet(const std::vector<IndexSet> &_container) const | 
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| 65 | { | 
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| 66 | // create superset | 
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| 67 | IndexSet::ptr _AllIndices(new IndexSet); | 
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| 68 | for (std::vector<IndexSet>::const_iterator iter = _container.begin(); | 
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| 69 | iter != _container.end(); ++iter) | 
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| 70 | for(IndexSet::const_iterator keyiter = (*iter).begin(); | 
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| 71 | keyiter != (*iter).end(); ++keyiter) { | 
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| 72 | if (*keyiter != (size_t)-1) | 
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| 73 | _AllIndices->insert((Index_t)*keyiter); | 
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| 74 | } | 
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| 75 | LOG(2, "DEBUG: AllIndices is " << *_AllIndices << "."); | 
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| 76 |  | 
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| 77 | return _AllIndices; | 
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| 78 | } | 
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| 79 |  | 
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| 80 | IndexSet::ptr IndexSetContainer::createSuperSet(const std::vector<IndexSet::ptr> &_container) const | 
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| 81 | { | 
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| 82 | // create superset | 
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| 83 | IndexSet::ptr _AllIndices(new IndexSet); | 
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| 84 | for (std::vector<IndexSet::ptr>::const_iterator iter = _container.begin(); | 
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| 85 | iter != _container.end(); ++iter) | 
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| 86 | for(IndexSet::const_iterator keyiter = (*iter)->begin(); | 
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| 87 | keyiter != (*iter)->end(); ++keyiter) { | 
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| 88 | if (*keyiter != (size_t)-1) | 
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| 89 | _AllIndices->insert((Index_t)*keyiter); | 
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| 90 | } | 
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| 91 | LOG(2, "DEBUG: AllIndices is " << *_AllIndices << "."); | 
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| 92 |  | 
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| 93 | return _AllIndices; | 
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| 94 | } | 
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| 95 |  | 
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| 96 | IndexSetContainer::IndexSetContainer(const KeySetsContainer &_keysets) : | 
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| 97 | AllIndices(createSuperSet(_keysets)) | 
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| 98 | { | 
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| 99 | const size_t SupersetSize = AllIndices->size(); | 
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| 100 | // create container with all keysets | 
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| 101 | for (KeySetsContainer::ArrayOfIntVectors::const_iterator iter = _keysets.KeySets.begin(); | 
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| 102 | iter != _keysets.KeySets.end(); ++iter) { | 
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| 103 | // create the IndexSets ... | 
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| 104 | IndexSet tempset; | 
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| 105 | for(KeySetsContainer::IntVector::const_iterator keyiter = (*iter).begin(); | 
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| 106 | keyiter != (*iter).end(); ++keyiter) | 
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| 107 | if (*keyiter != -1) | 
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| 108 | tempset.insert((Index_t)*keyiter); | 
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| 109 | // ... and insert, making sure that super set is AllIndices when present | 
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| 110 | if (tempset.size() < SupersetSize) | 
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| 111 | insert(tempset); | 
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| 112 | else | 
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| 113 | insert(AllIndices); | 
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| 114 | } | 
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| 115 | } | 
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| 116 |  | 
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| 117 | size_t IndexSetContainer::countSetsTillLevel(const size_t level) const | 
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| 118 | { | 
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| 119 | // check if any sets are present | 
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| 120 | if (getContainer().empty()) | 
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| 121 | return 0; | 
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| 122 | // define ends of interval | 
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| 123 | SortedVector<IndexSet>::Container_t::const_iterator start = getContainer().begin(); | 
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| 124 | SortedVector<IndexSet>::Container_t::const_iterator end = --getContainer().end(); | 
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| 125 | // check whether all are smaller | 
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| 126 | if ((*end)->size() <= level) | 
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| 127 | return getContainer().size(); | 
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| 128 | // check whether all are larger | 
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| 129 | if ((*start)->size() > level) | 
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| 130 | return 0; | 
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| 131 | // continue as long as interval has more than one element | 
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| 132 | while (std::distance(start, end) > 1) { | 
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| 133 | // create iterator in between | 
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| 134 | SortedVector<IndexSet>::Container_t::const_iterator midpoint = start; | 
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| 135 | std::advance( midpoint, std::distance(start, end)/2 ); | 
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| 136 | // check iter and half the interval | 
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| 137 | if ((*midpoint)->size() <= level) | 
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| 138 | start = midpoint; | 
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| 139 | else | 
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| 140 | end = midpoint; | 
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| 141 | } | 
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| 142 | return std::distance(getContainer().begin(), end); | 
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| 143 | } | 
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