| [fb69e9] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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|  | 4 | * Copyright (C)  2012 University of Bonn. All rights reserved. | 
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| [5aaa43] | 5 | * Copyright (C)  2013 Frederik Heber. All rights reserved. | 
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| [fb69e9] | 6 | * | 
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|  | 7 | * | 
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|  | 8 | *   This file is part of MoleCuilder. | 
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|  | 9 | * | 
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|  | 10 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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|  | 11 | *    it under the terms of the GNU General Public License as published by | 
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|  | 12 | *    the Free Software Foundation, either version 2 of the License, or | 
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|  | 13 | *    (at your option) any later version. | 
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|  | 14 | * | 
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|  | 15 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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|  | 16 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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|  | 17 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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|  | 18 | *    GNU General Public License for more details. | 
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|  | 19 | * | 
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|  | 20 | *    You should have received a copy of the GNU General Public License | 
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|  | 21 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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|  | 22 | */ | 
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|  | 23 |  | 
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|  | 24 | /* | 
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|  | 25 | * IndexSetContainer.cpp | 
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|  | 26 | * | 
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|  | 27 | *  Created on: Aug 2, 2012 | 
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|  | 28 | *      Author: heber | 
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|  | 29 | */ | 
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|  | 30 |  | 
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|  | 31 |  | 
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|  | 32 | // include config.h | 
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|  | 33 | #ifdef HAVE_CONFIG_H | 
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|  | 34 | #include <config.h> | 
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|  | 35 | #endif | 
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|  | 36 |  | 
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|  | 37 | #include "CodePatterns/MemDebug.hpp" | 
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|  | 38 |  | 
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|  | 39 | #include "IndexSetContainer.hpp" | 
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|  | 40 |  | 
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| [8a0e78] | 41 | #include <iterator> | 
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|  | 42 |  | 
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| [fb69e9] | 43 | #include "CodePatterns/Log.hpp" | 
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|  | 44 |  | 
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|  | 45 | #include "Fragmentation/Summation/IndexSet.hpp" | 
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|  | 46 | #include "Fragmentation/KeySetsContainer.hpp" | 
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|  | 47 |  | 
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| [19c50e] | 48 | IndexSet::ptr IndexSetContainer::createSuperSet(const KeySetsContainer &_keysets) const | 
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| [fb69e9] | 49 | { | 
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|  | 50 | // create superset | 
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| [19c50e] | 51 | IndexSet::ptr _AllIndices(new IndexSet); | 
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| [fb69e9] | 52 | for (KeySetsContainer::ArrayOfIntVectors::const_iterator iter = _keysets.KeySets.begin(); | 
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|  | 53 | iter != _keysets.KeySets.end(); ++iter) | 
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|  | 54 | for(KeySetsContainer::IntVector::const_iterator keyiter = (*iter).begin(); | 
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|  | 55 | keyiter != (*iter).end(); ++keyiter) { | 
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|  | 56 | if (*keyiter != -1) | 
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| [19c50e] | 57 | _AllIndices->insert((Index_t)*keyiter); | 
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| [fb69e9] | 58 | } | 
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| [1b5a40] | 59 | LOG(2, "DEBUG: AllIndices is " << *_AllIndices << "."); | 
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| [fb69e9] | 60 |  | 
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| [19c50e] | 61 | return _AllIndices; | 
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| [fb69e9] | 62 | } | 
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|  | 63 |  | 
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| [781408] | 64 | IndexSet::ptr IndexSetContainer::createSuperSet(const std::vector<IndexSet> &_container) const | 
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|  | 65 | { | 
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|  | 66 | // create superset | 
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|  | 67 | IndexSet::ptr _AllIndices(new IndexSet); | 
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|  | 68 | for (std::vector<IndexSet>::const_iterator iter = _container.begin(); | 
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|  | 69 | iter != _container.end(); ++iter) | 
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|  | 70 | for(IndexSet::const_iterator keyiter = (*iter).begin(); | 
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|  | 71 | keyiter != (*iter).end(); ++keyiter) { | 
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|  | 72 | if (*keyiter != -1) | 
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|  | 73 | _AllIndices->insert((Index_t)*keyiter); | 
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|  | 74 | } | 
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|  | 75 | LOG(2, "DEBUG: AllIndices is " << *_AllIndices << "."); | 
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|  | 76 |  | 
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|  | 77 | return _AllIndices; | 
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|  | 78 | } | 
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|  | 79 |  | 
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|  | 80 | IndexSet::ptr IndexSetContainer::createSuperSet(const std::vector<IndexSet::ptr> &_container) const | 
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|  | 81 | { | 
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|  | 82 | // create superset | 
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|  | 83 | IndexSet::ptr _AllIndices(new IndexSet); | 
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|  | 84 | for (std::vector<IndexSet::ptr>::const_iterator iter = _container.begin(); | 
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|  | 85 | iter != _container.end(); ++iter) | 
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|  | 86 | for(IndexSet::const_iterator keyiter = (*iter)->begin(); | 
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|  | 87 | keyiter != (*iter)->end(); ++keyiter) { | 
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|  | 88 | if (*keyiter != -1) | 
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|  | 89 | _AllIndices->insert((Index_t)*keyiter); | 
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|  | 90 | } | 
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|  | 91 | LOG(2, "DEBUG: AllIndices is " << *_AllIndices << "."); | 
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|  | 92 |  | 
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|  | 93 | return _AllIndices; | 
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|  | 94 | } | 
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|  | 95 |  | 
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| [fb69e9] | 96 | IndexSetContainer::IndexSetContainer(const KeySetsContainer &_keysets) : | 
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| [19c50e] | 97 | AllIndices(createSuperSet(_keysets)) | 
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| [fb69e9] | 98 | { | 
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| [19c50e] | 99 | const size_t SupersetSize = AllIndices->size(); | 
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| [fb69e9] | 100 | // create container with all keysets | 
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|  | 101 | for (KeySetsContainer::ArrayOfIntVectors::const_iterator iter = _keysets.KeySets.begin(); | 
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|  | 102 | iter != _keysets.KeySets.end(); ++iter) { | 
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| [19c50e] | 103 | // create the IndexSets ... | 
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| [fb69e9] | 104 | IndexSet tempset; | 
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|  | 105 | for(KeySetsContainer::IntVector::const_iterator keyiter = (*iter).begin(); | 
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|  | 106 | keyiter != (*iter).end(); ++keyiter) | 
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|  | 107 | if (*keyiter != -1) | 
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|  | 108 | tempset.insert((Index_t)*keyiter); | 
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| [19c50e] | 109 | // ... and insert, making sure that super set is AllIndices when present | 
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|  | 110 | if (tempset.size() < SupersetSize) | 
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| [fb69e9] | 111 | insert(tempset); | 
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| [19c50e] | 112 | else | 
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|  | 113 | insert(AllIndices); | 
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| [fb69e9] | 114 | } | 
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|  | 115 | } | 
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| [8a0e78] | 116 |  | 
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|  | 117 | size_t IndexSetContainer::countSetsTillLevel(const size_t level) const | 
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|  | 118 | { | 
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|  | 119 | // check if any sets are present | 
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|  | 120 | if (getContainer().empty()) | 
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|  | 121 | return 0; | 
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|  | 122 | // define ends of interval | 
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|  | 123 | SortedVector<IndexSet>::Container_t::const_iterator start = getContainer().begin(); | 
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|  | 124 | SortedVector<IndexSet>::Container_t::const_iterator end = --getContainer().end(); | 
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|  | 125 | // check whether all are smaller | 
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|  | 126 | if ((*end)->size() <= level) | 
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|  | 127 | return getContainer().size(); | 
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|  | 128 | // check whether all are larger | 
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|  | 129 | if ((*start)->size() > level) | 
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|  | 130 | return 0; | 
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|  | 131 | // continue as long as interval has more than one element | 
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|  | 132 | while (std::distance(start, end) > 1) { | 
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|  | 133 | // create iterator in between | 
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|  | 134 | SortedVector<IndexSet>::Container_t::const_iterator midpoint = start; | 
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|  | 135 | std::advance( midpoint, std::distance(start, end)/2 ); | 
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|  | 136 | // check iter and half the interval | 
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|  | 137 | if ((*midpoint)->size() <= level) | 
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|  | 138 | start = midpoint; | 
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|  | 139 | else | 
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|  | 140 | end = midpoint; | 
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|  | 141 | } | 
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|  | 142 | return std::distance(getContainer().begin(), end); | 
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|  | 143 | } | 
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