| [a9b86d] | 1 | # PLEASE adhere to the alphabetical ordering in this Makefile!
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 | 2 | # Also indentation by a single tab
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 | 3 | 
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 | 4 | FRAGMENTATIONSOURCE = \
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| [ca8bea] | 5 |         Fragmentation/Exporters/ExportGraph_ToFiles.cpp \
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| [786d28] | 6 |         Fragmentation/Exporters/ExportGraph_ToJobs.cpp \
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| [ca8bea] | 7 |         Fragmentation/Exporters/ExportGraph.cpp \
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| [c3df23] | 8 |         Fragmentation/Exporters/HydrogenPool.cpp \
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| [bac32f] | 9 |         Fragmentation/Exporters/SaturatedBond.cpp \
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| [7d5fcd] | 10 |         Fragmentation/Exporters/SaturatedFragment.cpp \
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| [a1d1dd] | 11 |         Fragmentation/Exporters/SaturationDistanceMaximizer.cpp \
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| [8387e0] | 12 |         Fragmentation/Homology/FragmentEdge.cpp \
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 | 13 |         Fragmentation/Homology/FragmentNode.cpp \
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| [4694df] | 14 |         Fragmentation/Homology/HomologyContainer.cpp \
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| [7b6b21f] | 15 |         Fragmentation/Homology/HomologyGraph.cpp \
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| [730d7a] | 16 |         Fragmentation/AdaptivityMap.cpp \
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| [212c179] | 17 |         Fragmentation/BondsPerShortestPath.cpp \
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| [a9b86d] | 18 |         Fragmentation/EnergyMatrix.cpp \
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 | 19 |         Fragmentation/ForceMatrix.cpp \
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| [246e13] | 20 |         Fragmentation/Fragmentation.cpp \
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| [d9a032] | 21 |         Fragmentation/fragmentation_helpers.cpp \
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| [dadc74] | 22 |         Fragmentation/Graph.cpp \
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| [a9b86d] | 23 |         Fragmentation/helpers.cpp \
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 | 24 |         Fragmentation/HessianMatrix.cpp \
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| [0331ee] | 25 |         Fragmentation/Interfragmenter.cpp \
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| [f0674a] | 26 |         Fragmentation/KeySet.cpp \
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| [a03d25] | 27 |         Fragmentation/MatrixContainer.cpp \
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| [f67817f] | 28 |         Fragmentation/PowerSetGenerator.cpp \
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| [dcbb5d] | 29 |         Fragmentation/SortIndex.cpp \
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| [a03d25] | 30 |         Fragmentation/UniqueFragments.cpp
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| [a9b86d] | 31 | 
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 | 32 | FRAGMENTATIONHEADER = \
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| [ca8bea] | 33 |         Fragmentation/Exporters/ExportGraph_ToFiles.hpp \
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| [786d28] | 34 |         Fragmentation/Exporters/ExportGraph_ToJobs.hpp \
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| [ca8bea] | 35 |         Fragmentation/Exporters/ExportGraph.hpp \
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| [c3df23] | 36 |         Fragmentation/Exporters/HydrogenPool.hpp \
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| [bac32f] | 37 |         Fragmentation/Exporters/SaturatedBond.hpp \
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| [7d5fcd] | 38 |         Fragmentation/Exporters/SaturatedFragment.hpp \
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| [a1d1dd] | 39 |         Fragmentation/Exporters/SaturationDistanceMaximizer.hpp \
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| [8387e0] | 40 |         Fragmentation/Homology/FragmentEdge.hpp \
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 | 41 |         Fragmentation/Homology/FragmentNode.hpp \
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| [4694df] | 42 |         Fragmentation/Homology/HomologyContainer.hpp \
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| [7b6b21f] | 43 |         Fragmentation/Homology/HomologyGraph.hpp \
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| [730d7a] | 44 |         Fragmentation/AdaptivityMap.hpp \
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| [f96874] | 45 |         Fragmentation/AtomMask.hpp \
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| [212c179] | 46 |         Fragmentation/BondsPerShortestPath.hpp \
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| [a9b86d] | 47 |         Fragmentation/defs.hpp \
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 | 48 |         Fragmentation/EnergyMatrix.hpp \
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 | 49 |         Fragmentation/ForceMatrix.hpp \
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| [246e13] | 50 |         Fragmentation/Fragmentation.hpp \
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| [f67817f] | 51 |         Fragmentation/fragmentation_helpers.hpp \
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| [dadc74] | 52 |         Fragmentation/Graph.hpp \
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 | 53 |         Fragmentation/helpers.cpp \
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| [a9b86d] | 54 |         Fragmentation/helpers.hpp \
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 | 55 |         Fragmentation/HessianMatrix.hpp \
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| [262ecc] | 56 |         Fragmentation/HydrogenSaturation_enum.hpp \
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| [0331ee] | 57 |         Fragmentation/Interfragmenter.hpp \
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| [f0674a] | 58 |         Fragmentation/KeySet.hpp \
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| [a03d25] | 59 |         Fragmentation/MatrixContainer.hpp \
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| [f96874] | 60 |         Fragmentation/Mask.hpp \
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 | 61 |         Fragmentation/MoleculeMask.hpp \
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| [f67817f] | 62 |         Fragmentation/PowerSetGenerator.hpp \
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| [dcbb5d] | 63 |         Fragmentation/SortIndex.hpp \
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| [a03d25] | 64 |         Fragmentation/UniqueFragments.hpp
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| [a9b86d] | 65 | 
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| [fbf143] | 66 | lib_LTLIBRARIES += \
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 | 67 |         libMolecuilderFragmentation_KeysetsContainer.la
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| [fe0355] | 68 | noinst_LTLIBRARIES += \
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 | 69 |         libMolecuilderFragmentation.la \
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 | 70 |         libMolecuilderFragmentation_getFromKeyset.la \
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 | 71 |         libMolecuilderFragmentation_getFromKeysetStub.la
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| [214240] | 72 | libMolecuilderFragmentation_la_includedir = $(includedir)/MoleCuilder/
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 | 73 | libMolecuilderFragmentation_KeysetsContainer_la_includedir = $(includedir)/MoleCuilder/
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 | 74 | libMolecuilderFragmentation_getFromKeyset_la_includedir = $(includedir)/MoleCuilder/
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 | 75 | libMolecuilderFragmentation_getFromKeysetStub_la_includedir = $(includedir)/MoleCuilder/
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| [ac9ca4] | 76 | libMolecuilderFragmentation_la_CPPFLAGS = $(AM_CPPFLAGS)
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 | 77 | libMolecuilderFragmentation_la_LDFLAGS = $(AM_LDFLAGS)
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| [fbf143] | 78 | libMolecuilderFragmentation_KeysetsContainer_la_LIBADD = \
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 | 79 |         $(CodePatterns_LIBS)
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| [ac9ca4] | 80 | libMolecuilderFragmentation_la_LIBADD =
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 | 81 | if CONDJOBMARKET
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 | 82 | libMolecuilderFragmentation_la_CPPFLAGS += ${JobMarket_CFLAGS}
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 | 83 | libMolecuilderFragmentation_la_LDFLAGS += $(JobMarket_LDFLAGS)
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 | 84 | libMolecuilderFragmentation_la_LIBADD += $(JobMarket_LIBS)
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 | 85 | endif
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| [a9b86d] | 86 | 
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 | 87 | nobase_libMolecuilderFragmentation_la_include_HEADERS = ${FRAGMENTATIONHEADER}
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| [fbf143] | 88 | nobase_libMolecuilderFragmentation_KeysetsContainer_la_include_HEADERS = \
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 | 89 |         Fragmentation/KeySetsContainer.hpp \
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 | 90 |         Fragmentation/parseKeySetFile.hpp
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| [a9b86d] | 91 | 
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 | 92 | ## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
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 | 93 | ## target.  Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
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 | 94 | ## will therefore be treated as if it were literally part of the target name,
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 | 95 | ## and the variable name derived from that.
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 | 96 | ## The file extension .cc is recognized by Automake, and makes it produce
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 | 97 | ## rules which invoke the C++ compiler to produce a libtool object file (.lo)
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 | 98 | ## from each source file.  Note that it is not necessary to list header files
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 | 99 | ## which are already listed elsewhere in a _HEADERS variable assignment.
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 | 100 | libMolecuilderFragmentation_la_SOURCES = ${FRAGMENTATIONSOURCE}
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| [fbf143] | 101 | libMolecuilderFragmentation_KeysetsContainer_la_SOURCES = \
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 | 102 |         Fragmentation/KeySetsContainer.cpp \
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 | 103 |         Fragmentation/parseKeySetFile.cpp
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| [fe0355] | 104 | libMolecuilderFragmentation_getFromKeyset_la_SOURCES = \
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 | 105 |         Fragmentation/Homology/HomologyGraph_getFromKeyset.cpp
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 | 106 | libMolecuilderFragmentation_getFromKeysetStub_la_SOURCES = \
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 | 107 |         Fragmentation/Homology/HomologyGraph_getFromKeysetStub.cpp
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| [a9b86d] | 108 | 
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 | 109 | ## Instruct libtool to include ABI version information in the generated shared
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 | 110 | ## library file (.so).  The library ABI version is defined in configure.ac, so
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 | 111 | ## that all version information is kept in one place.
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| [fbf143] | 112 | libMolecuilderFragmentation_KeysetsContainer_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
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| [a9b86d] | 113 | 
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 | 114 | ## The generated configuration header is installed in its own subdirectory of
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 | 115 | ## $(libdir).  The reason for this is that the configuration information put
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 | 116 | ## into this header file describes the target platform the installed library
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 | 117 | ## has been built for.  Thus the file must not be installed into a location
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 | 118 | ## intended for architecture-independent files, as defined by the Filesystem
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 | 119 | ## Hierarchy Standard (FHS).
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 | 120 | ## The nodist_ prefix instructs Automake to not generate rules for including
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 | 121 | ## the listed files in the distribution on 'make dist'.  Files that are listed
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 | 122 | ## in _HEADERS variables are normally included in the distribution, but the
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 | 123 | ## configuration header file is generated at configure time and should not be
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 | 124 | ## shipped with the source tarball.
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| [fbf143] | 125 | libMolecuilderFragmentation_KeysetsContainer_libincludedir = $(libdir)/MoleCuilder/include
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 | 126 | nodist_libMolecuilderFragmentation_KeysetsContainer_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
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| [a9b86d] | 127 | 
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 | 128 | ## Install the generated pkg-config file (.pc) into the expected location for
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 | 129 | ## architecture-dependent package configuration information.  Occasionally,
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 | 130 | ## pkg-config files are also used for architecture-independent data packages,
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 | 131 | ## in which case the correct install location would be $(datadir)/pkgconfig.
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 | 132 | #pkgconfigdir = $(libdir)/pkgconfig
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 | 133 | #pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
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