| [bcf653] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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| [0aa122] | 4 |  * Copyright (C)  2010-2012 University of Bonn. All rights reserved.
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| [94d5ac6] | 5 |  * 
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 | 6 |  *
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 | 7 |  *   This file is part of MoleCuilder.
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 | 8 |  *
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 | 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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 | 10 |  *    it under the terms of the GNU General Public License as published by
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 | 11 |  *    the Free Software Foundation, either version 2 of the License, or
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 | 12 |  *    (at your option) any later version.
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 | 13 |  *
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 | 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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 | 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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 | 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 | 17 |  *    GNU General Public License for more details.
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 | 18 |  *
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 | 19 |  *    You should have received a copy of the GNU General Public License
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 | 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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| [bcf653] | 21 |  */
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 | 22 | 
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| [6b919f8] | 23 | /*
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 | 24 |  * atom_bondedparticleinfo.cpp
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 | 25 |  *
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 | 26 |  *  Created on: Oct 19, 2009
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 | 27 |  *      Author: heber
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 | 28 |  */
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 | 29 | 
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| [bf3817] | 30 | // include config.h
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 | 31 | #ifdef HAVE_CONFIG_H
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 | 32 | #include <config.h>
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 | 33 | #endif
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 | 34 | 
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| [ad011c] | 35 | #include "CodePatterns/MemDebug.hpp"
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| [112b09] | 36 | 
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| [9d83b6] | 37 | #include "CodePatterns/Assert.hpp"
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| [38c44b] | 38 | #include "CodePatterns/Log.hpp"
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| [9d83b6] | 39 | 
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 | 40 | #include "WorldTime.hpp"
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 | 41 | 
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| [6b919f8] | 42 | #include "atom_bondedparticleinfo.hpp"
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 | 43 | 
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| [5e2f80] | 44 | 
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 | 45 | BondList BondedParticleInfo::emptyList;
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 | 46 | 
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| [8cc22f] | 47 | void BondedParticleInfo::AppendTrajectoryStep(const unsigned int _step)
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| [1e6249] | 48 | {
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| [8cc22f] | 49 |   ListOfBonds.insert( std::make_pair(_step, emptyList) );
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| [38c44b] | 50 |   LOG(5,"BondedParticleInfo::AppendTrajectoryStep() called, size is " << ListOfBonds.size());
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| [1e6249] | 51 | }
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 | 52 | 
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| [8cc22f] | 53 | void BondedParticleInfo::removeTrajectoryStep(const unsigned int _step)
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| [7e51e1] | 54 | {
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| [8cc22f] | 55 |   ListOfBonds.erase(_step);
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| [7e51e1] | 56 |   LOG(5,"BondedParticleInfo::removeTrajectoryStep() called, size is " << ListOfBonds.size());
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 | 57 | }
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 | 58 | 
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| [9d83b6] | 59 | const BondList& BondedParticleInfo::getListOfBonds() const
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 | 60 | {
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| [8cc22f] | 61 |   return getListOfBondsAtStep(WorldTime::getTime());
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| [9d83b6] | 62 | }
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 | 63 | 
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| [a1c8fa] | 64 | template <class List_t>
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 | 65 | void setEntryInList(
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 | 66 |     List_t &_list,
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 | 67 |     const typename List_t::key_type _step,
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 | 68 |     const typename List_t::mapped_type &_value)
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| [6b919f8] | 69 | {
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| [a1c8fa] | 70 |   typename List_t::iterator iter =
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 | 71 |     _list.find(_step);
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 | 72 |   if (iter != _list.end())
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 | 73 |     iter->second = _value;
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 | 74 |   else
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 | 75 |     _list.insert( std::make_pair(_step, _value) );
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 | 76 | }
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 | 77 | 
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 | 78 | template <class List_t>
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 | 79 | const typename List_t::mapped_type& getEntryInList(
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 | 80 |     const List_t &_list,
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 | 81 |     const typename List_t::key_type _step,
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 | 82 |     const typename List_t::mapped_type &_empty)
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 | 83 | {
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 | 84 |   typename List_t::const_iterator iter =
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 | 85 |     _list.find(_step);
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 | 86 |   if (iter != _list.end())
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| [8cc22f] | 87 |     return iter->second;
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| [a1c8fa] | 88 |   return _empty;
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| [9d83b6] | 89 | }
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| [a1c8fa] | 90 | 
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 | 91 | const BondList& BondedParticleInfo::getListOfBondsAtStep(unsigned int _step) const
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 | 92 | {
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 | 93 |   return getEntryInList<BondTrajectory_t>(ListOfBonds, _step, emptyList);
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 | 94 | }
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 | 95 | 
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 | 96 | const unsigned char& BondedParticleInfo::getMaxOrder() const
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 | 97 | {
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 | 98 |   return getMaxOrder(WorldTime::getTime());
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 | 99 | }
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 | 100 | 
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 | 101 | const unsigned char& BondedParticleInfo::getMaxOrder(unsigned int _step) const
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 | 102 | {
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 | 103 |   static unsigned char emptyOrder=0;
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 | 104 |   return getEntryInList<OrderTrajectory_t>(MaxOrder, _step, emptyOrder);
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 | 105 | }
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 | 106 | 
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 | 107 | void BondedParticleInfo::setMaxOrder(unsigned char _value)
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 | 108 | {
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 | 109 |   setMaxOrder(WorldTime::getTime(), _value);
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 | 110 | }
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 | 111 | 
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 | 112 | void BondedParticleInfo::setMaxOrder(unsigned int _step, const unsigned char _value)
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 | 113 | {
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 | 114 |   setEntryInList<OrderTrajectory_t>(MaxOrder, _step, _value);
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 | 115 | }
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 | 116 | 
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 | 117 | const unsigned char& BondedParticleInfo::getAdaptiveOrder() const
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 | 118 | {
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 | 119 |   return getAdaptiveOrder(WorldTime::getTime());
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 | 120 | }
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 | 121 | 
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 | 122 | const unsigned char& BondedParticleInfo::getAdaptiveOrder(unsigned int _step) const
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 | 123 | {
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 | 124 |   static unsigned char emptyOrder=0;
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 | 125 |   return getEntryInList<OrderTrajectory_t>(AdaptiveOrder, _step, emptyOrder);
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 | 126 | }
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 | 127 | 
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 | 128 | void BondedParticleInfo::setAdaptiveOrder(unsigned char _value)
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 | 129 | {
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 | 130 |   setAdaptiveOrder(WorldTime::getTime(), _value);
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 | 131 | }
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 | 132 | 
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 | 133 | void BondedParticleInfo::setAdaptiveOrder(unsigned int _step, const unsigned char _value)
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 | 134 | {
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 | 135 |   setEntryInList<OrderTrajectory_t>(AdaptiveOrder, _step, _value);
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 | 136 | }
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 | 137 | 
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