| [57dd40] | 1 | /*
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 | 2 |  * UndoRedoHelpers.hpp
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 | 3 |  *
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 | 4 |  *  Created on: Apr 5, 2012
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 | 5 |  *      Author: heber
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 | 6 |  */
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 | 7 | 
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 | 8 | #ifndef UNDOREDOHELPERS_HPP_
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 | 9 | #define UNDOREDOHELPERS_HPP_
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 | 10 | 
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 | 11 | 
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 | 12 | // include config.h
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 | 13 | #ifdef HAVE_CONFIG_H
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 | 14 | #include <config.h>
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 | 15 | #endif
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 | 16 | 
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 | 17 | #include <vector>
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 | 18 | 
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 | 19 | #include "Atom/AtomicInfo.hpp"
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| [af9be32] | 20 | #include "Bond/BondInfo.hpp"
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| [57dd40] | 21 | 
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 | 22 | namespace MoleCuilder {
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 | 23 | 
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 | 24 |   /** Adds removed atoms back to the world whose state is stored as AtomicInfo.
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 | 25 |    *
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 | 26 |    * @param atoms vector of atomicInfo
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 | 27 |    * @return restoral was successful, at least atom could not be restored.
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 | 28 |    */
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 | 29 |   bool AddAtomsFromAtomicInfo(std::vector<AtomicInfo> &atoms);
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 | 30 | 
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 | 31 |   /** Removes atoms whose state information is stored as AtomicInfo.
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 | 32 |    *
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 | 33 |    * @param atoms vector of atomicInfo
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 | 34 |    */
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 | 35 |   void RemoveAtomsFromAtomicInfo(std::vector<AtomicInfo> &atoms);
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 | 36 | 
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| [af9be32] | 37 |   /** Stores the required bond information in for all \a atoms in \a bonds.
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 | 38 |    *
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 | 39 |    * @param atoms atoms whose bonds to store
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 | 40 |    * @param bonds vector with bond information on return
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 | 41 |    */
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 | 42 |   void StoreBondInformationFromAtoms(
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 | 43 |       const std::vector<const atom*> &atoms,
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 | 44 |       std::vector<BondInfo> &bonds);
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 | 45 | 
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 | 46 |   /** Recreates bonds from information stored in \a bonds.
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 | 47 |    *
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 | 48 |    * @param bonds bond state information
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 | 49 |    * @return true - all bonds restored, false - at least one bond could not be restored
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 | 50 |    */
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 | 51 |   bool AddBondsFromBondInfo(const std::vector< BondInfo > &bonds);
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 | 52 | 
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| [57dd40] | 53 |   /** Sets atoms to state information stored as AtomicInfo.
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 | 54 |    *
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 | 55 |    * @param movedatoms vector of atomicInfo
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 | 56 |    */
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 | 57 |   void SetAtomsFromAtomicInfo(std::vector<AtomicInfo> &movedatoms);
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 | 58 | 
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 | 59 |   /** Selects all atoms inside the given vector
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 | 60 |    *
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 | 61 |    * @param movedatoms vector of atomicInfo
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 | 62 |    */
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 | 63 |   void SelectAtomsFromAtomicInfo(std::vector<AtomicInfo> &movedatoms);
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 | 64 | 
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 | 65 |   /** Sets the atoms whose id is stored in given AtomicInfo in \a movedatoms
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 | 66 |    *  to position in \a MovedToVector.
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 | 67 |    *
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 | 68 |    * @param movedatoms atoms whose position to change
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 | 69 |    * @param MovedToVector vector with old positions
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 | 70 |    */
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 | 71 |   void ResetAtomPosition(const std::vector<AtomicInfo> &movedatoms, const std::vector<Vector> &MovedToVector);
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| [8ea3e7] | 72 | 
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 | 73 |   /** Remove all molecules identified by their ids given in \a ids.
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 | 74 |    *
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 | 75 |    * @param ids vector of molecular ids to remove
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 | 76 |    */
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 | 77 |   void RemoveMoleculesWithAtomsByIds(const std::vector<moleculeId_t> &ids);
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| [57dd40] | 78 | }
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 | 79 | 
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 | 80 | 
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 | 81 | 
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 | 82 | #endif /* UNDOREDOHELPERS_HPP_ */
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