| [bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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| [0aa122] | 4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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| [bcf653] | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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| [97ebf8] | 8 | /*
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| 9 | * VerletIntegrationAction.cpp
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| 10 | *
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| 11 | * Created on: May 10, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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| [bf3817] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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| [ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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| [112b09] | 21 |
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| [6f0841] | 22 | #include "Atom/atom.hpp"
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| 23 | #include "Atom/AtomSet.hpp"
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| [ad011c] | 24 | #include "CodePatterns/Log.hpp"
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| 25 | #include "CodePatterns/Verbose.hpp"
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| [435065] | 26 | #include "Dynamics/VerletForceIntegration.hpp"
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| 27 | #include "molecule.hpp"
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| [1a3c26] | 28 | #include "World.hpp"
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| [97ebf8] | 29 |
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| [435065] | 30 | #include <vector>
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| [97ebf8] | 31 | #include <iostream>
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| 32 | #include <fstream>
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| 33 | #include <string>
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| 34 |
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| [1fd675] | 35 | #include "Actions/MoleculeAction/VerletIntegrationAction.hpp"
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| [bcd16a] | 36 |
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| [ce7fdc] | 37 | using namespace MoleCuilder;
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| 38 |
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| [1fd675] | 39 | // and construct the stuff
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| 40 | #include "VerletIntegrationAction.def"
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| 41 | #include "Action_impl_pre.hpp"
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| 42 | /** =========== define the function ====================== */
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| [97ebf8] | 43 | Action::state_ptr MoleculeVerletIntegrationAction::performCall() {
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| [47d041] | 44 | LOG(1, "Parsing forces file and Verlet integrating.");
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| [435065] | 45 | // TODO: sollte besser stream nutzen, nicht filename direkt (es sei denn, ist prefix), besser fuer unit test
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| 46 | char outputname[MAXSTRINGSIZE];
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| [f10b0c] | 47 | strcpy(outputname, params.forcesfile.get().string().c_str());
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| [435065] | 48 | AtomSetMixin<std::vector<atom *> > set(World::getInstance().getSelectedAtoms());
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| [eced82] | 49 | for (unsigned int step = 0; step < params.MDSteps.get(); ++step) {
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| [f10b0c] | 50 | VerletForceIntegration<std::vector<atom *> > Verlet(set, params.Deltat.get(), step, false);
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| 51 | if (!Verlet(outputname, 1, 0, params.FixedCenterOfMass.get()))
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| 52 | LOG(2, "File " << params.forcesfile.get() << " not found.");
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| [97ebf8] | 53 | else
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| [f10b0c] | 54 | LOG(2, "File " << params.forcesfile.get() << " found and parsed.");
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| [97ebf8] | 55 | }
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| [435065] | 56 |
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| [bcd16a] | 57 | return Action::success;
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| [97ebf8] | 58 | }
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| 59 |
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| 60 | Action::state_ptr MoleculeVerletIntegrationAction::performUndo(Action::state_ptr _state) {
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| 61 | // MoleculeVerletIntegrationState *state = assert_cast<MoleculeVerletIntegrationState*>(_state.get());
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| 62 |
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| 63 | // string newName = state->mol->getName();
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| 64 | // state->mol->setName(state->lastName);
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| 65 |
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| 66 | return Action::failure;
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| 67 | }
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| 68 |
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| 69 | Action::state_ptr MoleculeVerletIntegrationAction::performRedo(Action::state_ptr _state){
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| [e69c87] | 70 | return Action::failure;
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| [97ebf8] | 71 | }
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| 72 |
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| 73 | bool MoleculeVerletIntegrationAction::canUndo() {
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| [e69c87] | 74 | return true;
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| [97ebf8] | 75 | }
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| 76 |
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| 77 | bool MoleculeVerletIntegrationAction::shouldUndo() {
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| [e69c87] | 78 | return true;
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| [97ebf8] | 79 | }
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| [1fd675] | 80 | /** =========== end of function ====================== */
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