source: src/Actions/Makefile.am@ cad383

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since cad383 was 867473, checked in by Frederik Heber <heber@…>, 10 years ago

Added new RemoveAction for molecules.

  • also add regression test.
  • added remove-molecule to userguide.
  • Property mode set to 100644
File size: 29.8 KB
Line 
1# PLEASE adhere to the alphabetical ordering in this Makefile!
2# Also indentation by a single tab
3
4ACTIONSSOURCE = \
5 Actions/Action.cpp \
6 Actions/ActionHistory.cpp \
7 Actions/ActionQueue.cpp \
8 Actions/ActionRegistry.cpp \
9 Actions/ActionSequence.cpp \
10 Actions/ActionStatusList.cpp \
11 Actions/ActionTrait.cpp \
12 Actions/ErrorAction.cpp \
13 Actions/MakroAction.cpp \
14 Actions/ManipulateAtomsProcess.cpp \
15 Actions/MethodAction.cpp \
16 Actions/OptionRegistry.cpp \
17 Actions/OptionTrait.cpp \
18 Actions/Process.cpp \
19 Actions/toCLIString.cpp \
20 Actions/toPythonString.cpp \
21 Actions/UndoRedoHelpers.cpp \
22 Actions/Values.cpp
23
24ACTIONSHEADER = \
25 Actions/Action.hpp \
26 Actions/ActionExceptions.hpp \
27 Actions/Action_impl_header.hpp \
28 Actions/Action_impl_pre.hpp \
29 Actions/Action_impl_undef.hpp \
30 Actions/ActionHistory.hpp \
31 Actions/ActionQueue.hpp \
32 Actions/ActionParameters.hpp \
33 Actions/ActionRegistry.hpp \
34 Actions/ActionSequence.hpp \
35 Actions/ActionState.hpp \
36 Actions/ActionStatusList.hpp \
37 Actions/ActionTrait.hpp \
38 Actions/ActionTraits.hpp \
39 Actions/AtomsCalculation.hpp \
40 Actions/AtomsCalculation_impl.hpp \
41 Actions/Calculation.hpp \
42 Actions/Calculation_impl.hpp \
43 Actions/ErrorAction.hpp \
44 Actions/GlobalListOfActions.hpp \
45 Actions/MakroAction.hpp \
46 Actions/MakroAction_impl_header.hpp \
47 Actions/MakroAction_impl_pre.hpp \
48 Actions/ManipulateAtomsProcess.hpp \
49 Actions/MethodAction.hpp \
50 Actions/OptionRegistry.hpp \
51 Actions/OptionTrait.hpp \
52 Actions/Process.hpp \
53 Actions/toCLIString.hpp \
54 Actions/toPythonString.hpp \
55 Actions/UndoRedoHelpers.hpp \
56 Actions/Values.hpp
57
58ACTIONPROTOTYPESSOURCE = \
59 ${ANALYSISACTIONSOURCE} \
60 ${ATOMACTIONSOURCE} \
61 ${BONDACTIONSOURCE} \
62 ${CMDACTIONSOURCE} \
63 ${FILLACTIONSOURCE} \
64 ${FRAGMENTATIONACTIONSOURCE} \
65 ${GRAPHACTIONSOURCE} \
66 ${MOLECULEACTIONSOURCE} \
67 ${PARSERACTIONSOURCE} \
68 ${POTENTIALACTIONSOURCE} \
69 ${RANDONNUMBERSSOURCE} \
70 ${SELECTIONATOMACTIONSOURCE} \
71 ${SELECTIONMOLECULEACTIONSOURCE} \
72 ${SELECTIONSHAPEACTIONSOURCE} \
73 ${SHAPEACTIONSOURCE} \
74 ${TESSELATIONACTIONSOURCE} \
75 $(UNDOACTIONSOURCE) \
76 ${WORLDACTIONSOURCE}
77
78ACTIONPROTOTYPESHEADER = \
79 ${ANALYSISACTIONHEADER} \
80 ${ATOMACTIONHEADER} \
81 ${BONDACTIONHEADER} \
82 ${CMDACTIONHEADER} \
83 ${FILLACTIONHEADER} \
84 ${FRAGMENTATIONACTIONHEADER} \
85 ${GRAPHACTIONHEADER} \
86 ${MOLECULEACTIONHEADER} \
87 ${PARSERACTIONHEADER} \
88 ${POTENTIALACTIONHEADER} \
89 ${RANDONNUMBERSHEADER} \
90 ${SELECTIONATOMACTIONHEADER} \
91 ${SELECTIONMOLECULEACTIONHEADER} \
92 ${SELECTIONSHAPEACTIONHEADER} \
93 ${SHAPEACTIONHEADER} \
94 ${TESSELATIONACTIONHEADER} \
95 $(UNDOACTIONHEADER) \
96 ${WORLDACTIONHEADER}
97
98ACTIONPROTOTYPESDEFS = \
99 ${ANALYSISACTIONDEFS} \
100 ${ATOMACTIONDEFS} \
101 ${BONDACTIONDEFS} \
102 ${CMDACTIONDEFS} \
103 ${FILLACTIONDEFS} \
104 ${FRAGMENTATIONACTIONDEFS} \
105 ${GRAPHACTIONDEFS} \
106 ${MOLECULEACTIONDEFS} \
107 ${PARSERACTIONDEFS} \
108 ${POTENTIALACTIONDEFS} \
109 ${RANDONNUMBERSDEFS} \
110 ${SELECTIONATOMACTIONDEFS} \
111 ${SELECTIONMOLECULEACTIONDEFS} \
112 ${SELECTIONSHAPEACTIONDEFS} \
113 ${SHAPEACTIONDEFS} \
114 ${TESSELATIONACTIONDEFS} \
115 $(UNDOACTIONDEFS) \
116 ${WORLDACTIONDEFS}
117
118ANALYSISACTIONSOURCE = \
119 Actions/AnalysisAction/AverageMoleculeForceAction.cpp \
120 Actions/AnalysisAction/DipoleAngularCorrelationAction.cpp \
121 Actions/AnalysisAction/DipoleCorrelationAction.cpp \
122 Actions/AnalysisAction/MolecularVolumeAction.cpp \
123 Actions/AnalysisAction/PairCorrelationAction.cpp \
124 Actions/AnalysisAction/PointCorrelationAction.cpp \
125 Actions/AnalysisAction/PrincipalAxisSystemAction.cpp \
126 Actions/AnalysisAction/SurfaceCorrelationAction.cpp
127ANALYSISACTIONHEADER = \
128 Actions/AnalysisAction/AverageMoleculeForceAction.hpp \
129 Actions/AnalysisAction/DipoleAngularCorrelationAction.hpp \
130 Actions/AnalysisAction/DipoleCorrelationAction.hpp \
131 Actions/AnalysisAction/MolecularVolumeAction.hpp \
132 Actions/AnalysisAction/PairCorrelationAction.hpp \
133 Actions/AnalysisAction/PointCorrelationAction.hpp \
134 Actions/AnalysisAction/PrincipalAxisSystemAction.hpp \
135 Actions/AnalysisAction/SurfaceCorrelationAction.hpp
136ANALYSISACTIONDEFS = \
137 Actions/AnalysisAction/AverageMoleculeForceAction.def \
138 Actions/AnalysisAction/DipoleAngularCorrelationAction.def \
139 Actions/AnalysisAction/DipoleCorrelationAction.def \
140 Actions/AnalysisAction/MolecularVolumeAction.def \
141 Actions/AnalysisAction/PairCorrelationAction.def \
142 Actions/AnalysisAction/PointCorrelationAction.def \
143 Actions/AnalysisAction/PrincipalAxisSystemAction.def \
144 Actions/AnalysisAction/SurfaceCorrelationAction.def
145
146ATOMACTIONSOURCE = \
147 Actions/AtomAction/AddAction.cpp \
148 Actions/AtomAction/ChangeElementAction.cpp \
149 Actions/AtomAction/MirrorAction.cpp \
150 Actions/AtomAction/RemoveAction.cpp \
151 Actions/AtomAction/RotateAroundOriginByAngleAction.cpp \
152 Actions/AtomAction/SaveSelectedAtomsAction.cpp \
153 Actions/AtomAction/TranslateAction.cpp \
154 Actions/AtomAction/TranslateToOriginAction.cpp
155ATOMACTIONHEADER = \
156 Actions/AtomAction/AddAction.hpp \
157 Actions/AtomAction/ChangeElementAction.hpp \
158 Actions/AtomAction/MirrorAction.hpp \
159 Actions/AtomAction/RemoveAction.hpp \
160 Actions/AtomAction/RotateAroundOriginByAngleAction.hpp \
161 Actions/AtomAction/SaveSelectedAtomsAction.hpp \
162 Actions/AtomAction/TranslateAction.hpp \
163 Actions/AtomAction/TranslateToOriginAction.hpp
164ATOMACTIONDEFS = \
165 Actions/AtomAction/AddAction.def \
166 Actions/AtomAction/ChangeElementAction.def \
167 Actions/AtomAction/MirrorAction.def \
168 Actions/AtomAction/RemoveAction.def \
169 Actions/AtomAction/RotateAroundOriginByAngleAction.def \
170 Actions/AtomAction/SaveSelectedAtomsAction.def \
171 Actions/AtomAction/TranslateAction.def \
172 Actions/AtomAction/TranslateToOriginAction.def
173
174BONDACTIONSOURCE = \
175 Actions/BondAction/BondAddAction.cpp \
176 Actions/BondAction/BondRemoveAction.cpp
177BONDACTIONHEADER = \
178 Actions/BondAction/BondAddAction.hpp \
179 Actions/BondAction/BondRemoveAction.hpp
180BONDACTIONDEFS = \
181 Actions/BondAction/BondAddAction.def \
182 Actions/BondAction/BondRemoveAction.def
183
184CMDACTIONSOURCE = \
185 Actions/CommandAction/BondLengthTableAction.cpp \
186 Actions/CommandAction/ElementDbAction.cpp \
187 Actions/CommandAction/FastParsingAction.cpp \
188 Actions/CommandAction/HelpAction.cpp \
189 Actions/CommandAction/HelpRedistributeAction.cpp \
190 Actions/CommandAction/StoreSessionAction.cpp \
191 Actions/CommandAction/VerboseAction.cpp \
192 Actions/CommandAction/VersionAction.cpp \
193 Actions/CommandAction/WarrantyAction.cpp
194CMDACTIONHEADER = \
195 Actions/CommandAction/BondLengthTableAction.hpp \
196 Actions/CommandAction/ElementDbAction.hpp \
197 Actions/CommandAction/FastParsingAction.hpp \
198 Actions/CommandAction/HelpAction.hpp \
199 Actions/CommandAction/HelpRedistributeAction.hpp \
200 Actions/CommandAction/StoreSessionAction.hpp \
201 Actions/CommandAction/VerboseAction.hpp \
202 Actions/CommandAction/VersionAction.hpp \
203 Actions/CommandAction/WarrantyAction.hpp
204CMDACTIONDEFS = \
205 Actions/CommandAction/BondLengthTableAction.def \
206 Actions/CommandAction/ElementDbAction.def \
207 Actions/CommandAction/FastParsingAction.def \
208 Actions/CommandAction/HelpAction.def \
209 Actions/CommandAction/HelpRedistributeAction.def \
210 Actions/CommandAction/StoreSessionAction.def \
211 Actions/CommandAction/VerboseAction.def \
212 Actions/CommandAction/VersionAction.def \
213 Actions/CommandAction/WarrantyAction.def
214
215if CONDPYTHON
216CMDACTIONSOURCE += \
217 Actions/CommandAction/LoadSessionAction.cpp
218CMDACTIONHEADER += \
219 Actions/CommandAction/LoadSessionAction.hpp
220CMDACTIONDEFS += \
221 Actions/CommandAction/LoadSessionAction.def
222endif
223
224FILLACTIONSOURCE = \
225 Actions/FillAction/FillRegularGridAction.cpp \
226 Actions/FillAction/FillSurfaceAction.cpp \
227 Actions/FillAction/SuspendInMoleculeAction.cpp \
228 Actions/FillAction/FillVolumeAction.cpp
229FILLACTIONHEADER = \
230 Actions/FillAction/FillRegularGridAction.hpp \
231 Actions/FillAction/FillSurfaceAction.hpp \
232 Actions/FillAction/SuspendInMoleculeAction.hpp \
233 Actions/FillAction/FillVolumeAction.hpp
234FILLACTIONDEFS = \
235 Actions/FillAction/FillRegularGridAction.def \
236 Actions/FillAction/FillSurfaceAction.def \
237 Actions/FillAction/SuspendInMoleculeAction.def \
238 Actions/FillAction/FillVolumeAction.def
239
240
241FRAGMENTATIONACTIONSOURCE = \
242 Actions/FragmentationAction/AnalyseFragmentationResultsAction.cpp \
243 Actions/FragmentationAction/ClearFragmentationResultsAction.cpp \
244 Actions/FragmentationAction/FragmentationAction.cpp \
245 Actions/FragmentationAction/FragmentationAutomationAction.cpp \
246 Actions/FragmentationAction/MolecularDynamicsAction.cpp \
247 Actions/FragmentationAction/ParseFragmentJobsAction.cpp \
248 Actions/FragmentationAction/StoreSaturatedFragmentAction.cpp \
249 Actions/FragmentationAction/StructuralOptimizationAction.cpp
250FRAGMENTATIONACTIONHEADER = \
251 Actions/FragmentationAction/AnalyseFragmentationResultsAction.hpp \
252 Actions/FragmentationAction/ClearFragmentationResultsAction.hpp \
253 Actions/FragmentationAction/FragmentationAction.hpp \
254 Actions/FragmentationAction/FragmentationAutomationAction.hpp \
255 Actions/FragmentationAction/MolecularDynamicsAction.hpp \
256 Actions/FragmentationAction/ParseFragmentJobsAction.hpp \
257 Actions/FragmentationAction/StoreSaturatedFragmentAction.hpp \
258 Actions/FragmentationAction/StructuralOptimizationAction.hpp
259FRAGMENTATIONACTIONDEFS = \
260 Actions/FragmentationAction/AnalyseFragmentationResultsAction.def \
261 Actions/FragmentationAction/ClearFragmentationResultsAction.def \
262 Actions/FragmentationAction/FragmentationAction.def \
263 Actions/FragmentationAction/FragmentationAutomationAction.def \
264 Actions/FragmentationAction/MolecularDynamicsAction.def \
265 Actions/FragmentationAction/ParseFragmentJobsAction.def \
266 Actions/FragmentationAction/StoreSaturatedFragmentAction.def \
267 Actions/FragmentationAction/StructuralOptimizationAction.def
268
269GRAPHACTIONSOURCE = \
270 Actions/GraphAction/CorrectBondDegreeAction.cpp \
271 Actions/GraphAction/CreateAdjacencyAction.cpp \
272 Actions/GraphAction/DepthFirstSearchAction.cpp \
273 Actions/GraphAction/DestroyAdjacencyAction.cpp \
274 Actions/GraphAction/SubgraphDissectionAction.cpp \
275 Actions/GraphAction/UpdateMoleculesAction.cpp
276GRAPHACTIONHEADER = \
277 Actions/GraphAction/CorrectBondDegreeAction.hpp \
278 Actions/GraphAction/CreateAdjacencyAction.hpp \
279 Actions/GraphAction/DepthFirstSearchAction.hpp \
280 Actions/GraphAction/DestroyAdjacencyAction.hpp \
281 Actions/GraphAction/SubgraphDissectionAction.hpp \
282 Actions/GraphAction/UpdateMoleculesAction.hpp
283GRAPHACTIONDEFS = \
284 Actions/GraphAction/CorrectBondDegreeAction.def \
285 Actions/GraphAction/CreateAdjacencyAction.def \
286 Actions/GraphAction/DepthFirstSearchAction.def \
287 Actions/GraphAction/DestroyAdjacencyAction.def \
288 Actions/GraphAction/SubgraphDissectionAction.def \
289 Actions/GraphAction/UpdateMoleculesAction.def
290
291MOLECULEACTIONSOURCE = \
292 Actions/MoleculeAction/BondFileAction.cpp \
293 Actions/MoleculeAction/ChangeBondAngleAction.cpp \
294 Actions/MoleculeAction/ChangeNameAction.cpp \
295 Actions/MoleculeAction/CopyAction.cpp \
296 Actions/MoleculeAction/ForceAnnealingAction.cpp \
297 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp \
298 Actions/MoleculeAction/LoadAction.cpp \
299 Actions/MoleculeAction/RemoveAction.cpp \
300 Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp \
301 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp \
302 Actions/MoleculeAction/SaveSelectedMoleculesAction.cpp \
303 Actions/MoleculeAction/SaveAdjacencyAction.cpp \
304 Actions/MoleculeAction/SaveBondsAction.cpp \
305 Actions/MoleculeAction/SaveTemperatureAction.cpp \
306 Actions/MoleculeAction/StretchBondAction.cpp \
307 Actions/MoleculeAction/VerletIntegrationAction.cpp
308MOLECULEACTIONHEADER = \
309 Actions/MoleculeAction/BondFileAction.hpp \
310 Actions/MoleculeAction/ChangeBondAngleAction.hpp \
311 Actions/MoleculeAction/ChangeNameAction.hpp \
312 Actions/MoleculeAction/CopyAction.hpp \
313 Actions/MoleculeAction/ForceAnnealingAction.hpp \
314 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp \
315 Actions/MoleculeAction/LoadAction.hpp \
316 Actions/MoleculeAction/RemoveAction.hpp \
317 Actions/MoleculeAction/RotateAroundSelfByAngleAction.hpp \
318 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp \
319 Actions/MoleculeAction/SaveSelectedMoleculesAction.hpp \
320 Actions/MoleculeAction/SaveAdjacencyAction.hpp \
321 Actions/MoleculeAction/SaveBondsAction.hpp \
322 Actions/MoleculeAction/SaveTemperatureAction.hpp \
323 Actions/MoleculeAction/StretchBondAction.hpp \
324 Actions/MoleculeAction/VerletIntegrationAction.hpp
325MOLECULEACTIONDEFS = \
326 Actions/MoleculeAction/BondFileAction.def \
327 Actions/MoleculeAction/ChangeBondAngleAction.def \
328 Actions/MoleculeAction/ChangeNameAction.def \
329 Actions/MoleculeAction/CopyAction.def \
330 Actions/MoleculeAction/ForceAnnealingAction.def \
331 Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.def \
332 Actions/MoleculeAction/LoadAction.def \
333 Actions/MoleculeAction/RemoveAction.def \
334 Actions/MoleculeAction/RotateAroundSelfByAngleAction.def \
335 Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.def \
336 Actions/MoleculeAction/SaveSelectedMoleculesAction.def \
337 Actions/MoleculeAction/SaveAdjacencyAction.def \
338 Actions/MoleculeAction/SaveBondsAction.def \
339 Actions/MoleculeAction/SaveTemperatureAction.def \
340 Actions/MoleculeAction/StretchBondAction.def \
341 Actions/MoleculeAction/VerletIntegrationAction.def
342
343PARSERACTIONSOURCE = \
344 Actions/ParserAction/ParseTremoloPotentialsAction.cpp \
345 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.cpp \
346 Actions/ParserAction/SetParserParametersAction.cpp \
347 Actions/ParserAction/SetOutputFormatsAction.cpp \
348 Actions/ParserAction/SetTremoloAtomdataAction.cpp
349PARSERACTIONHEADER = \
350 Actions/ParserAction/ParseTremoloPotentialsAction.hpp \
351 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.hpp \
352 Actions/ParserAction/SetParserParametersAction.hpp \
353 Actions/ParserAction/SetOutputFormatsAction.hpp \
354 Actions/ParserAction/SetTremoloAtomdataAction.hpp
355PARSERACTIONDEFS = \
356 Actions/ParserAction/ParseTremoloPotentialsAction.def \
357 Actions/ParserAction/SaveSelectedAtomsAsExtTypesAction.def \
358 Actions/ParserAction/SetParserParametersAction.def \
359 Actions/ParserAction/SetOutputFormatsAction.def \
360 Actions/ParserAction/SetTremoloAtomdataAction.def
361
362POTENTIALACTIONSOURCE = \
363 Actions/PotentialAction/FitParticleChargesAction.cpp \
364 Actions/PotentialAction/ParseHomologiesAction.cpp \
365 Actions/PotentialAction/ParsePotentialsAction.cpp \
366 Actions/PotentialAction/SaveHomologiesAction.cpp \
367 Actions/PotentialAction/SavePotentialsAction.cpp
368POTENTIALACTIONHEADER = \
369 Actions/PotentialAction/FitParticleChargesAction.hpp \
370 Actions/PotentialAction/ParseHomologiesAction.hpp \
371 Actions/PotentialAction/ParsePotentialsAction.hpp \
372 Actions/PotentialAction/SaveHomologiesAction.hpp \
373 Actions/PotentialAction/SavePotentialsAction.hpp
374POTENTIALACTIONDEFS = \
375 Actions/PotentialAction/FitParticleChargesAction.def \
376 Actions/PotentialAction/ParseHomologiesAction.def \
377 Actions/PotentialAction/ParsePotentialsAction.def \
378 Actions/PotentialAction/SaveHomologiesAction.def \
379 Actions/PotentialAction/SavePotentialsAction.def
380
381if CONDLEVMAR
382POTENTIALACTIONSOURCE += \
383 Actions/PotentialAction/FitCompoundPotentialAction.cpp \
384 Actions/PotentialAction/FitPotentialAction.cpp
385POTENTIALACTIONHEADER += \
386 Actions/PotentialAction/FitCompoundPotentialAction.hpp \
387 Actions/PotentialAction/FitPotentialAction.hpp
388POTENTIALACTIONDEFS += \
389 Actions/PotentialAction/FitCompoundPotentialAction.def \
390 Actions/PotentialAction/FitPotentialAction.def
391endif
392
393RANDONNUMBERSSOURCE =\
394 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.cpp \
395 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.cpp
396RANDONNUMBERSHEADER =\
397 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.hpp \
398 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.hpp
399RANDONNUMBERSDEFS =\
400 Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.def \
401 Actions/RandomNumbersAction/SetRandomNumbersEngineAction.def
402
403SELECTIONATOMACTIONSOURCE = \
404 Actions/SelectionAction/Atoms/AllAtomsAction.cpp \
405 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.cpp \
406 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.cpp \
407 Actions/SelectionAction/Atoms/AtomByElementAction.cpp \
408 Actions/SelectionAction/Atoms/AtomByIdAction.cpp \
409 Actions/SelectionAction/Atoms/AtomByOrderAction.cpp \
410 Actions/SelectionAction/Atoms/ClearAllAtomsAction.cpp \
411 Actions/SelectionAction/Atoms/InvertAtomsAction.cpp \
412 Actions/SelectionAction/Atoms/NotAllAtomsAction.cpp \
413 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.cpp \
414 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.cpp \
415 Actions/SelectionAction/Atoms/NotAtomByElementAction.cpp \
416 Actions/SelectionAction/Atoms/NotAtomByIdAction.cpp \
417 Actions/SelectionAction/Atoms/NotAtomByOrderAction.cpp
418SELECTIONATOMACTIONHEADER = \
419 Actions/SelectionAction/Atoms/AllAtomsAction.hpp \
420 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.hpp \
421 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.hpp \
422 Actions/SelectionAction/Atoms/AtomByElementAction.hpp \
423 Actions/SelectionAction/Atoms/AtomByIdAction.hpp \
424 Actions/SelectionAction/Atoms/AtomByOrderAction.hpp \
425 Actions/SelectionAction/Atoms/ClearAllAtomsAction.hpp \
426 Actions/SelectionAction/Atoms/InvertAtomsAction.hpp \
427 Actions/SelectionAction/Atoms/NotAllAtomsAction.hpp \
428 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.hpp \
429 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.hpp \
430 Actions/SelectionAction/Atoms/NotAtomByElementAction.hpp \
431 Actions/SelectionAction/Atoms/NotAtomByIdAction.hpp \
432 Actions/SelectionAction/Atoms/NotAtomByOrderAction.hpp
433SELECTIONATOMACTIONDEFS = \
434 Actions/SelectionAction/Atoms/AllAtomsAction.def \
435 Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.def \
436 Actions/SelectionAction/Atoms/AllAtomsOfMoleculeAction.def \
437 Actions/SelectionAction/Atoms/AtomByElementAction.def \
438 Actions/SelectionAction/Atoms/AtomByIdAction.def \
439 Actions/SelectionAction/Atoms/AtomByOrderAction.def \
440 Actions/SelectionAction/Atoms/ClearAllAtomsAction.def \
441 Actions/SelectionAction/Atoms/InvertAtomsAction.def \
442 Actions/SelectionAction/Atoms/NotAllAtomsAction.def \
443 Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.def \
444 Actions/SelectionAction/Atoms/NotAllAtomsOfMoleculeAction.def \
445 Actions/SelectionAction/Atoms/NotAtomByElementAction.def \
446 Actions/SelectionAction/Atoms/NotAtomByIdAction.def \
447 Actions/SelectionAction/Atoms/NotAtomByOrderAction.def
448
449SELECTIONMOLECULEACTIONSOURCE = \
450 Actions/SelectionAction/Molecules/AllMoleculesAction.cpp \
451 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.cpp \
452 Actions/SelectionAction/Molecules/InvertMoleculesAction.cpp \
453 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.cpp \
454 Actions/SelectionAction/Molecules/MoleculeByIdAction.cpp \
455 Actions/SelectionAction/Molecules/MoleculeByNameAction.cpp \
456 Actions/SelectionAction/Molecules/MoleculeByOrderAction.cpp \
457 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.cpp \
458 Actions/SelectionAction/Molecules/NotAllMoleculesAction.cpp \
459 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.cpp \
460 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.cpp \
461 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.cpp \
462 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.cpp \
463 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.cpp
464SELECTIONMOLECULEACTIONHEADER = \
465 Actions/SelectionAction/Molecules/AllMoleculesAction.hpp \
466 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.hpp \
467 Actions/SelectionAction/Molecules/InvertMoleculesAction.hpp \
468 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.hpp \
469 Actions/SelectionAction/Molecules/MoleculeByIdAction.hpp \
470 Actions/SelectionAction/Molecules/MoleculeByNameAction.hpp \
471 Actions/SelectionAction/Molecules/MoleculeByOrderAction.hpp \
472 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.hpp \
473 Actions/SelectionAction/Molecules/NotAllMoleculesAction.hpp \
474 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.hpp \
475 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.hpp \
476 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.hpp \
477 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.hpp \
478 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.hpp
479SELECTIONMOLECULEACTIONDEFS = \
480 Actions/SelectionAction/Molecules/AllMoleculesAction.def \
481 Actions/SelectionAction/Molecules/ClearAllMoleculesAction.def \
482 Actions/SelectionAction/Molecules/InvertMoleculesAction.def \
483 Actions/SelectionAction/Molecules/MoleculeByFormulaAction.def \
484 Actions/SelectionAction/Molecules/MoleculeByIdAction.def \
485 Actions/SelectionAction/Molecules/MoleculeByNameAction.def \
486 Actions/SelectionAction/Molecules/MoleculeByOrderAction.def \
487 Actions/SelectionAction/Molecules/MoleculeOfAtomAction.def \
488 Actions/SelectionAction/Molecules/NotAllMoleculesAction.def \
489 Actions/SelectionAction/Molecules/NotMoleculeByFormulaAction.def \
490 Actions/SelectionAction/Molecules/NotMoleculeByIdAction.def \
491 Actions/SelectionAction/Molecules/NotMoleculeByNameAction.def \
492 Actions/SelectionAction/Molecules/NotMoleculeByOrderAction.def \
493 Actions/SelectionAction/Molecules/NotMoleculeOfAtomAction.def
494
495SELECTIONSHAPEACTIONSOURCE = \
496 Actions/SelectionAction/Shapes/AllShapesAction.cpp \
497 Actions/SelectionAction/Shapes/ShapeByNameAction.cpp \
498 Actions/SelectionAction/Shapes/NotAllShapesAction.cpp \
499 Actions/SelectionAction/Shapes/NotShapeByNameAction.cpp
500SELECTIONSHAPEACTIONHEADER = \
501 Actions/SelectionAction/Shapes/AllShapesAction.hpp \
502 Actions/SelectionAction/Shapes/ShapeByNameAction.hpp \
503 Actions/SelectionAction/Shapes/NotAllShapesAction.hpp \
504 Actions/SelectionAction/Shapes/NotShapeByNameAction.hpp
505SELECTIONSHAPEACTIONDEFS = \
506 Actions/SelectionAction/Shapes/AllShapesAction.def \
507 Actions/SelectionAction/Shapes/ShapeByNameAction.def \
508 Actions/SelectionAction/Shapes/NotAllShapesAction.def \
509 Actions/SelectionAction/Shapes/NotShapeByNameAction.def
510
511SHAPEACTIONSOURCE = \
512 Actions/ShapeAction/CombineShapesAction.cpp \
513 Actions/ShapeAction/CreateShapeAction.cpp \
514 Actions/ShapeAction/RemoveShapeAction.cpp \
515 Actions/ShapeAction/RotateShapeAction.cpp \
516 Actions/ShapeAction/StretchShapeAction.cpp \
517 Actions/ShapeAction/TranslateShapeAction.cpp
518SHAPEACTIONHEADER = \
519 Actions/ShapeAction/CombineShapesAction.hpp \
520 Actions/ShapeAction/CreateShapeAction.hpp \
521 Actions/ShapeAction/RemoveShapeAction.hpp \
522 Actions/ShapeAction/RotateShapeAction.hpp \
523 Actions/ShapeAction/StretchShapeAction.hpp \
524 Actions/ShapeAction/TranslateShapeAction.hpp
525SHAPEACTIONDEFS = \
526 Actions/ShapeAction/CombineShapesAction.def \
527 Actions/ShapeAction/CreateShapeAction.def \
528 Actions/ShapeAction/RemoveShapeAction.def \
529 Actions/ShapeAction/RotateShapeAction.def \
530 Actions/ShapeAction/StretchShapeAction.def \
531 Actions/ShapeAction/TranslateShapeAction.def
532
533TESSELATIONACTIONSOURCE = \
534 Actions/TesselationAction/ConvexEnvelopeAction.cpp \
535 Actions/TesselationAction/NonConvexEnvelopeAction.cpp
536TESSELATIONACTIONHEADER = \
537 Actions/TesselationAction/ConvexEnvelopeAction.hpp \
538 Actions/TesselationAction/NonConvexEnvelopeAction.hpp
539TESSELATIONACTIONDEFS = \
540 Actions/TesselationAction/ConvexEnvelopeAction.def \
541 Actions/TesselationAction/NonConvexEnvelopeAction.def
542
543UNDOACTIONSOURCE = \
544 Actions/RedoAction.cpp \
545 Actions/UndoAction.cpp
546UNDOACTIONHEADER = \
547 Actions/RedoAction.hpp \
548 Actions/UndoAction.hpp
549UNDOACTIONDEFS = \
550 Actions/RedoAction.def \
551 Actions/UndoAction.def
552
553
554WORLDACTIONSOURCE = \
555 Actions/WorldAction/AddEmptyBoundaryAction.cpp \
556 Actions/WorldAction/BoundInBoxAction.cpp \
557 Actions/WorldAction/CenterInBoxAction.cpp \
558 Actions/WorldAction/CenterOnEdgeAction.cpp \
559 Actions/WorldAction/ChangeBoxAction.cpp \
560 Actions/WorldAction/InputAction.cpp \
561 Actions/WorldAction/OutputAction.cpp \
562 Actions/WorldAction/OutputAsAction.cpp \
563 Actions/WorldAction/RepeatBoxAction.cpp \
564 Actions/WorldAction/ScaleBoxAction.cpp \
565 Actions/WorldAction/SetBoundaryConditionsAction.cpp \
566 Actions/WorldAction/SetDefaultNameAction.cpp \
567 Actions/WorldAction/SetWorldTimeAction.cpp
568WORLDACTIONHEADER = \
569 Actions/WorldAction/AddEmptyBoundaryAction.hpp \
570 Actions/WorldAction/BoundInBoxAction.hpp \
571 Actions/WorldAction/CenterInBoxAction.hpp \
572 Actions/WorldAction/CenterOnEdgeAction.hpp \
573 Actions/WorldAction/ChangeBoxAction.hpp \
574 Actions/WorldAction/InputAction.hpp \
575 Actions/WorldAction/OutputAction.hpp \
576 Actions/WorldAction/OutputAsAction.hpp \
577 Actions/WorldAction/RepeatBoxAction.hpp \
578 Actions/WorldAction/ScaleBoxAction.hpp \
579 Actions/WorldAction/SetBoundaryConditionsAction.hpp \
580 Actions/WorldAction/SetDefaultNameAction.hpp \
581 Actions/WorldAction/SetWorldTimeAction.hpp
582WORLDACTIONDEFS = \
583 Actions/WorldAction/AddEmptyBoundaryAction.def \
584 Actions/WorldAction/BoundInBoxAction.def \
585 Actions/WorldAction/CenterInBoxAction.def \
586 Actions/WorldAction/CenterOnEdgeAction.def \
587 Actions/WorldAction/ChangeBoxAction.def \
588 Actions/WorldAction/InputAction.def \
589 Actions/WorldAction/OutputAction.def \
590 Actions/WorldAction/OutputAsAction.def \
591 Actions/WorldAction/RepeatBoxAction.def \
592 Actions/WorldAction/ScaleBoxAction.def \
593 Actions/WorldAction/SetBoundaryConditionsAction.def \
594 Actions/WorldAction/SetDefaultNameAction.def \
595 Actions/WorldAction/SetWorldTimeAction.def
596
597#ACTIONPYTHONSOURCE_WITHDIR = $(ACTIONPROTOTYPESSOURCE:Action.cpp=Action.python.cpp)
598#ACTIONPYTHONSOURCE = $(notdir $(ACTIONPYTHONSOURCE_WITHDIR))
599
600noinst_LTLIBRARIES += \
601 libMolecuilderActions.la \
602 libMolecuilderActionPrototypes.la
603# libMolecuilderActionPython.la
604libMolecuilderActionPrototypes_la_CPPFLAGS = $(AM_CPPFLAGS)
605if CONDJOBMARKET
606libMolecuilderActionPrototypes_la_CPPFLAGS += $(JobMarket_CFLAGS)
607endif
608if CONDLEVMAR
609libMolecuilderActionPrototypes_la_CPPFLAGS += $(LEVMAR_CPPFLAGS)
610endif
611libMolecuilderActions_la_includedir = $(includedir)/MoleCuilder/
612libMolecuilderActionPrototypes_la_includedir = $(includedir)/MoleCuilder/
613#libMolecuilderActionPython_la_includedir = $(includedir)/MoleCuilder/
614
615BUILT_SOURCES += AllActionHeaders.hpp
616if CONDPYTHON
617BUILT_SOURCES += AllActionPython.hpp
618endif
619#$(ACTIONPYTHONSOURCE)
620
621# UIElements/libMolecuilderUI.la
622nobase_libMolecuilderActions_la_include_HEADERS = ${ACTIONSHEADER}
623nobase_libMolecuilderActionPrototypes_la_include_HEADERS = ${ACTIONPROTOTYPESHEADER} ${ACTIONPROTOTYPESDEFS}
624nodist_libMolecuilderActionPrototypes_la_include_HEADERS = AllActionHeaders.hpp
625#nobase_libMolecuilderActionPython_la_include_HEADERS = ${ACTIONPROTOTYPESHEADER} ${ACTIONPROTOTYPESDEFS}
626#nodist_libMolecuilderActionPython_la_include_HEADERS = AllActionHeaders.hpp
627
628## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
629## target. Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
630## will therefore be treated as if it were literally part of the target name,
631## and the variable name derived from that.
632## The file extension .cc is recognized by Automake, and makes it produce
633## rules which invoke the C++ compiler to produce a libtool object file (.lo)
634## from each source file. Note that it is not necessary to list header files
635## which are already listed elsewhere in a _HEADERS variable assignment.
636libMolecuilderActions_la_SOURCES = ${ACTIONSSOURCE}
637libMolecuilderActionPrototypes_la_SOURCES = ${ACTIONPROTOTYPESSOURCE}
638#libMolecuilderActionPython_la_SOURCES = ${ACTIONPYTHONSOURCE}
639
640## Instruct libtool to include ABI version information in the generated shared
641## library file (.so). The library ABI version is defined in configure.ac, so
642## that all version information is kept in one place.
643#libMolecuilderActions_la_LDFLAGS = -version-info $(MOLECUILDER_SO_VERSION)
644
645## The generated configuration header is installed in its own subdirectory of
646## $(libdir). The reason for this is that the configuration information put
647## into this header file describes the target platform the installed library
648## has been built for. Thus the file must not be installed into a location
649## intended for architecture-independent files, as defined by the Filesystem
650## Hierarchy Standard (FHS).
651## The nodist_ prefix instructs Automake to not generate rules for including
652## the listed files in the distribution on 'make dist'. Files that are listed
653## in _HEADERS variables are normally included in the distribution, but the
654## configuration header file is generated at configure time and should not be
655## shipped with the source tarball.
656#libMolecuilderActions_libincludedir = $(libdir)/MoleCuilder/include
657#nodist_libMolecuilderActions_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h
658
659## Install the generated pkg-config file (.pc) into the expected location for
660## architecture-dependent package configuration information. Occasionally,
661## pkg-config files are also used for architecture-independent data packages,
662## in which case the correct install location would be $(datadir)/pkgconfig.
663#pkgconfigdir = $(libdir)/pkgconfig
664#pkgconfig_DATA = $(top_builddir)/MoleCuilder.pc
665
666#SUFFIXES = .pytho n.cpp
667#.python.cpp: $*.def
668# echo "#include \"$<\"" >$@; \
669# echo "#include \"Actions/Action_impl_python.hpp\"" >>$@; \
670# echo "#include \"Actions/Action_impl_undef.hpp\"" >>$@;
671
672AllActionHeaders.hpp: $(ACTIONPROTOTYPESHEADER) Actions/GlobalListOfActions.hpp
673 echo "#ifndef ALLACTIONHEADERS_HPP_" >$@; \
674 echo "#define ALLACTIONHEADERS_HPP_" >>$@; \
675 for file in $(ACTIONPROTOTYPESHEADER); do \
676 echo "#include \"$$file\"" >>$@; \
677 done; \
678 echo "#endif /* ALLACTIONHEADERS_HPP_ */" >>$@;
679
680MOSTLYCLEANFILES += \
681 AllActionHeaders.hpp
682
683if CONDPYTHON
684AllActionPython.hpp: $(ACTIONPROTOTYPESHEADER) Actions/GlobalListOfActions.hpp
685 echo "#ifndef ALLACTIONPYTHON_HPP_" >$@; \
686 echo "#define ALLACTIONPYTHON_HPP_" >>$@; \
687 for file in $(ACTIONPROTOTYPESHEADER); do \
688 if test "$$file" != "Actions/CommandAction/LoadSessionAction.hpp"; then \
689 echo "#include \"`echo $$file | sed -e 's/hpp/def/'`\"" >>$@; \
690 echo "#include \"Actions/Action_impl_python.hpp\"" >>$@; \
691 echo "#include \"Actions/Action_impl_undef.hpp\"" >>$@; \
692 fi; \
693 done; \
694 echo "#endif /* ALLACTIONPYTHON_HPP_ */" >>$@;
695
696MOSTLYCLEANFILES += \
697 AllActionPython.hpp
698
699endif
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