Action_Thermostats
        Add_AtomRandomPerturbation
        Add_FitFragmentPartialChargesAction
        Add_RotateAroundBondAction
        Add_SelectAtomByNameAction
        Added_ParseSaveFragmentResults
        AddingActions_SaveParseParticleParameters
        Adding_Graph_to_ChangeBondActions
        Adding_MD_integration_tests
        Adding_ParticleName_to_Atom
        Adding_StructOpt_integration_tests
        AtomFragments
        Automaking_mpqc_open
        AutomationFragmentation_failures
        Candidate_v1.5.4
        Candidate_v1.6.0
        Candidate_v1.6.1
        Candidate_v1.7.0
        ChangeBugEmailaddress
        ChangingTestPorts
        ChemicalSpaceEvaluator
        CombiningParticlePotentialParsing
        Combining_Subpackages
        Debian_Package_split
        Debian_package_split_molecuildergui_only
        Disabling_MemDebug
        Docu_Python_wait
        EmpiricalPotential_contain_HomologyGraph
        EmpiricalPotential_contain_HomologyGraph_documentation
        Enable_parallel_make_install
        Enhance_userguide
        Enhanced_StructuralOptimization
        Enhanced_StructuralOptimization_continued
        Example_ManyWaysToTranslateAtom
        Exclude_Hydrogens_annealWithBondGraph
        FitPartialCharges_GlobalError
        Fix_BoundInBox_CenterInBox_MoleculeActions
        Fix_ChargeSampling_PBC
        Fix_ChronosMutex
        Fix_FitPartialCharges
        Fix_FitPotential_needs_atomicnumbers
        Fix_ForceAnnealing
        Fix_IndependentFragmentGrids
        Fix_ParseParticles
        Fix_ParseParticles_split_forward_backward_Actions
        Fix_PopActions
        Fix_QtFragmentList_sorted_selection
        Fix_Restrictedkeyset_FragmentMolecule
        Fix_StatusMsg
        Fix_StepWorldTime_single_argument
        Fix_Verbose_Codepatterns
        Fix_fitting_potentials
        Fixes
        ForceAnnealing_goodresults
        ForceAnnealing_oldresults
        ForceAnnealing_tocheck
        ForceAnnealing_with_BondGraph
        ForceAnnealing_with_BondGraph_continued
        ForceAnnealing_with_BondGraph_continued_betteresults
        ForceAnnealing_with_BondGraph_contraction-expansion
        FragmentAction_writes_AtomFragments
        FragmentMolecule_checks_bonddegrees
        GeometryObjects
        Gui_Fixes
        Gui_displays_atomic_force_velocity
        ImplicitCharges
        IndependentFragmentGrids
        IndependentFragmentGrids_IndividualZeroInstances
        IndependentFragmentGrids_IntegrationTest
        IndependentFragmentGrids_Sole_NN_Calculation
        JobMarket_RobustOnKillsSegFaults
        JobMarket_StableWorkerPool
        JobMarket_unresolvable_hostname_fix
        MoreRobust_FragmentAutomation
        ODR_violation_mpqc_open
        PartialCharges_OrthogonalSummation
        PdbParser_setsAtomName
        PythonUI_with_named_parameters
        QtGui_reactivate_TimeChanged_changes
        Recreated_GuiChecks
        Rewrite_FitPartialCharges
        RotateToPrincipalAxisSystem_UndoRedo
        SaturateAtoms_findBestMatching
        SaturateAtoms_singleDegree
        StoppableMakroAction
        Subpackage_CodePatterns
        Subpackage_JobMarket
        Subpackage_LinearAlgebra
        Subpackage_levmar
        Subpackage_mpqc_open
        Subpackage_vmg
        Switchable_LogView
        ThirdParty_MPQC_rebuilt_buildsystem
        TrajectoryDependenant_MaxOrder
        TremoloParser_IncreasedPrecision
        TremoloParser_MultipleTimesteps
        TremoloParser_setsAtomName
        Ubuntu_1604_changes
        stable
      
      
      
| Rev | Line |  | 
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| [5589e7e] | 1 | /* | 
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|  | 2 | * StoreSaturatedFragmentAction.def | 
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|  | 3 | * | 
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|  | 4 | *  Created on: Feb 26, 2013 | 
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|  | 5 | *      Author: heber | 
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|  | 6 | */ | 
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|  | 7 |  | 
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|  | 8 | // all includes and forward declarations necessary for non-integral types below | 
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|  | 9 | #include <string> | 
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|  | 10 | #include <vector> | 
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|  | 11 |  | 
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|  | 12 | #include "Parameters/Validators/DummyValidator.hpp" | 
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|  | 13 | #include "Parameters/Validators/STLVectorValidator.hpp" | 
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|  | 14 | #include "Parameters/Validators/Specific/ParserTypeValidator.hpp" | 
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|  | 15 |  | 
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|  | 16 | // i.e. there is an integer with variable name Z that can be found in | 
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|  | 17 | // ValueStorage by the token "Z" -> first column: int, Z, "Z" | 
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|  | 18 | // "undefine" if no parameters are required, use (NOPARAM_DEFAULT) for each (undefined) default value | 
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|  | 19 | #define paramtypes (std::string)(bool)(std::vector<std::string>) | 
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|  | 20 | #define paramtokens ("store-saturated-fragment")("DoSaturate")("output-types") | 
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|  | 21 | #define paramdescriptions ("name of fragment file")("do saturate dangling bonds with hydrogen")("type(s) of parsers that output fragment config files") | 
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| [ac9ca4] | 22 | #define paramdefaults (NOPARAM_DEFAULT)(PARAM_DEFAULT(true))(NOPARAM_DEFAULT) | 
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| [5589e7e] | 23 | #define paramreferences (prefix)(DoSaturation)(types) | 
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|  | 24 | #define paramvalids \ | 
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|  | 25 | (DummyValidator< std::string >()) \ | 
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|  | 26 | (DummyValidator< bool >()) \ | 
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|  | 27 | (STLVectorValidator< std::vector<std::string> >(1, 10, ParserTypeValidator())) | 
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|  | 28 |  | 
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|  | 29 | #undef statetypes | 
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|  | 30 | #undef statereferences | 
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|  | 31 |  | 
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|  | 32 | // some defines for all the names, you may use ACTION, STATE and PARAMS | 
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|  | 33 | #define CATEGORY Fragmentation | 
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|  | 34 | #define MENUNAME "fragmentation" | 
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|  | 35 | #define MENUPOSITION 4 | 
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|  | 36 | #define ACTIONNAME StoreSaturatedFragment | 
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|  | 37 | #define TOKEN "store-saturated-fragment" | 
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|  | 38 |  | 
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|  | 39 |  | 
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|  | 40 | // finally the information stored in the ActionTrait specialization | 
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|  | 41 | #define DESCRIPTION "store all selected atoms as a single fragment with dangling bonds satured by hydrogen" | 
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|  | 42 | #undef SHORTFORM | 
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