| [628577] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2013 Frederik Heber. All rights reserved.
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 | 5 |  * 
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 | 6 |  *
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 | 7 |  *   This file is part of MoleCuilder.
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 | 8 |  *
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 | 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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 | 10 |  *    it under the terms of the GNU General Public License as published by
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 | 11 |  *    the Free Software Foundation, either version 2 of the License, or
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 | 12 |  *    (at your option) any later version.
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 | 13 |  *
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 | 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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 | 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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 | 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 | 17 |  *    GNU General Public License for more details.
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 | 18 |  *
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 | 19 |  *    You should have received a copy of the GNU General Public License
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 | 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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 | 21 |  */
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 | 22 | 
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 | 23 | /*
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 | 24 |  * ActionQueue.cpp
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 | 25 |  *
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 | 26 |  *  Created on: Aug 16, 2013
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 | 27 |  *      Author: heber
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 | 28 |  */
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 | 29 | 
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 | 30 | // include config.h
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 | 31 | #ifdef HAVE_CONFIG_H
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 | 32 | #include <config.h>
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 | 33 | #endif
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 | 34 | 
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| [9eb71b3] | 35 | //#include "CodePatterns/MemDebug.hpp"
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| [628577] | 36 | 
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| [1d3563] | 37 | #include "Actions/ActionQueue.hpp"
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| [628577] | 38 | 
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| [690741] | 39 | #include "CodePatterns/Assert.hpp"
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 | 40 | #include "CodePatterns/IteratorAdaptors.hpp"
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| [46b181] | 41 | #include "CodePatterns/Log.hpp"
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| [628577] | 42 | #include "CodePatterns/Singleton_impl.hpp"
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 | 43 | 
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| [415ddd] | 44 | #include <boost/date_time/posix_time/posix_time.hpp>
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 | 45 | #include <boost/version.hpp>
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| [601ef8] | 46 | #include <iterator>
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| [46b181] | 47 | #include <string>
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 | 48 | #include <sstream>
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| [690741] | 49 | #include <vector>
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 | 50 | 
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| [0d4168] | 51 | #include "Actions/ActionExceptions.hpp"
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| [6367dd] | 52 | #include "Actions/ActionHistory.hpp"
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| [ed3944] | 53 | #include "Actions/ActionRegistry.hpp"
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| [0d4168] | 54 | #include "World.hpp"
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| [ed3944] | 55 | 
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| [628577] | 56 | using namespace MoleCuilder;
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 | 57 | 
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| [29b52b] | 58 | const Action* ActionQueue::_lastchangedaction = NULL;
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 | 59 | 
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| [ed3944] | 60 | ActionQueue::ActionQueue() :
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| [29b52b] | 61 |     Observable("ActionQueue"),
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| [6367dd] | 62 |     AR(new ActionRegistry()),
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| [af5384] | 63 |     history(new ActionHistory),
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| [f3db60] | 64 |     lastActionOk(true),
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| [601ef8] | 65 |     CurrentAction(0),
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| [a87d1e2] | 66 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 67 |     run_thread(boost::bind(&ActionQueue::run, this)),
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| [f3db60] | 68 |     run_thread_isIdle(true),
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| [74459a] | 69 | #endif
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| [f3db60] | 70 |     dryrun_flag(false)
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| [29b52b] | 71 | {
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 | 72 |   // channels of observable
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 | 73 |   Channels *OurChannel = new Channels;
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| [574d377] | 74 |   Observable::insertNotificationChannel( std::make_pair(static_cast<Observable *>(this), OurChannel) );
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| [29b52b] | 75 |   // add instance for each notification type
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 | 76 |   for (size_t type = 0; type < NotificationType_MAX; ++type)
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 | 77 |     OurChannel->addChannel(type);
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 | 78 | }
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| [628577] | 79 | 
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 | 80 | ActionQueue::~ActionQueue()
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| [ed3944] | 81 | {
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| [74459a] | 82 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 83 |   stop();
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| [601ef8] | 84 | 
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 | 85 |   clearTempQueue();
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| [74459a] | 86 | #endif
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| [415ddd] | 87 | 
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| [7f1a1a] | 88 |   clearQueue();
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| [af5384] | 89 | 
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| [6367dd] | 90 |   delete history;
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| [ed3944] | 91 |   delete AR;
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 | 92 | }
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| [628577] | 93 | 
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| [f54cda] | 94 | void ActionQueue::queueAction(const std::string &name, enum Action::QueryOptions state)
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| [05c989] | 95 | {
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| [10aee4] | 96 |   const Action & registryaction = AR->getActionByName(name);
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 | 97 |   queueAction(®istryaction, state);
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| [f54cda] | 98 | }
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 | 99 | 
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| [7f1a1a] | 100 | void ActionQueue::queueAction(const Action * const _action, enum Action::QueryOptions state)
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| [f54cda] | 101 | {
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| [af5384] | 102 |   Action *newaction = _action->clone(state);
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 | 103 |   newaction->prepare(state);
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| [74459a] | 104 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 105 |   mtx_queue.lock();
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| [74459a] | 106 | #endif
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| [7fc447] | 107 |   actionqueue.push_back( newaction );
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| [74459a] | 108 | #ifndef HAVE_ACTION_THREAD
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 | 109 |   try {
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| [a87d1e2] | 110 |     if (!isDryRun(newaction)) {
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 | 111 |       CurrentAction = actionqueue.size()-1;
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| [f3db60] | 112 |       newaction->call();
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| [a87d1e2] | 113 |       CurrentAction = actionqueue.size();
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 | 114 |     }
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| [a61dbb] | 115 |     lastActionOk = true;
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| [74459a] | 116 |   } catch(ActionFailureException &e) {
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 | 117 |     std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl;
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 | 118 |     World::getInstance().setExitFlag(5);
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| [601ef8] | 119 |     clearQueue(actionqueue.size()-1);
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| [a61dbb] | 120 |     lastActionOk = false;
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| [601ef8] | 121 |     std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [11d433] | 122 |   } catch (std::exception &e) {
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 | 123 |     pushStatus("FAIL: General exception caught, aborting.");
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 | 124 |     World::getInstance().setExitFlag(134);
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| [601ef8] | 125 |     clearQueue(actionqueue.size()-1);
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| [11d433] | 126 |     lastActionOk = false;
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| [601ef8] | 127 |     std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [74459a] | 128 |   }
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| [cfb9c5] | 129 |   if (lastActionOk) {
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 | 130 |     OBSERVE;
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 | 131 |     NOTIFY(ActionQueued);
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 | 132 |     _lastchangedaction = newaction;
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 | 133 |   }
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| [74459a] | 134 | #else
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| [415ddd] | 135 |   mtx_queue.unlock();
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| [a87d1e2] | 136 |   setRunThreadIdle(isIdle());
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| [74459a] | 137 | #endif
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| [05c989] | 138 | }
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 | 139 | 
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| [975b83] | 140 | void ActionQueue::insertAction(Action *_action, enum Action::QueryOptions state)
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 | 141 | {
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| [74459a] | 142 | #ifndef HAVE_ACTION_THREAD
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 | 143 |   queueAction(_action, state);
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 | 144 | #else
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| [415ddd] | 145 |   Action *newaction = _action->clone(state);
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 | 146 |   newaction->prepare(state);
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 | 147 |   mtx_queue.lock();
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 | 148 |   tempqueue.push_back( newaction );
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| [a87d1e2] | 149 |   const bool tempqueue_notempty = !tempqueue.empty();
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| [415ddd] | 150 |   mtx_queue.unlock();
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| [a87d1e2] | 151 |   setRunThreadIdle( !((!isIdle()) || tempqueue_notempty) );
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 | 152 | #endif
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 | 153 | }
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 | 154 | 
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 | 155 | bool ActionQueue::isIdle() const
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 | 156 | {
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 | 157 | #ifdef HAVE_ACTION_THREAD
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 | 158 |   boost::unique_lock<boost::mutex> lock(mtx_queue);
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| [74459a] | 159 | #endif
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| [a87d1e2] | 160 |   bool status = (CurrentAction == actionqueue.size());
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 | 161 |   return status;
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| [415ddd] | 162 | }
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 | 163 | 
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| [74459a] | 164 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 165 | void ActionQueue::run()
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 | 166 | {
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 | 167 |   bool Interrupted = false;
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 | 168 |   do {
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 | 169 |     // sleep for some time and wait for queue to fill up again
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 | 170 |     try {
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 | 171 | #if BOOST_VERSION < 105000
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 | 172 |       run_thread.sleep(boost::get_system_time() + boost::posix_time::milliseconds(100));
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 | 173 | #else
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| [d93b4b3] | 174 |       boost::this_thread::sleep_for(boost::chrono::milliseconds(100));
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| [415ddd] | 175 | #endif
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 | 176 |     } catch(boost::thread_interrupted &e) {
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 | 177 |       LOG(2, "INFO: ActionQueue has received stop signal.");
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 | 178 |       Interrupted = true;
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 | 179 |     }
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 | 180 | //    LOG(1, "DEBUG: Start of ActionQueue's run() loop.");
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 | 181 |     // call all currently present Actions
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 | 182 |     mtx_queue.lock();
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 | 183 |     insertTempQueue();
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 | 184 |     mtx_queue.unlock();
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| [a87d1e2] | 185 |     bool status = !isIdle();
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| [415ddd] | 186 |     while (status) {
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 | 187 |       //      boost::this_thread::disable_interruption di;
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 | 188 |       LOG(0, "Calling Action " << actionqueue[CurrentAction]->getName() << " ... ");
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 | 189 |       try {
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| [f3db60] | 190 |         if (!isDryRun(actionqueue[CurrentAction]))
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 | 191 |           actionqueue[CurrentAction]->call();
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| [0b6b77] | 192 |         pushStatus("SUCCESS: Action "+actionqueue[CurrentAction]->getName()+" successful.");
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| [a61dbb] | 193 |         lastActionOk = true;
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| [415ddd] | 194 |       } catch(ActionFailureException &e) {
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| [0b6b77] | 195 |         pushStatus("FAIL: Action "+*boost::get_error_info<ActionNameString>(e)+" has failed.");
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| [415ddd] | 196 |         World::getInstance().setExitFlag(5);
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| [601ef8] | 197 |         clearQueue(CurrentAction);
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 | 198 |         clearTempQueue();
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| [a61dbb] | 199 |         lastActionOk = false;
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| [601ef8] | 200 |         std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [11d433] | 201 |       } catch (std::exception &e) {
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 | 202 |         pushStatus("FAIL: General exception caught, aborting.");
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 | 203 |         World::getInstance().setExitFlag(134);
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| [601ef8] | 204 |         clearQueue(CurrentAction);
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 | 205 |         clearTempQueue();
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| [d8255b] | 206 |         lastActionOk = false;
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| [601ef8] | 207 |         std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [415ddd] | 208 |       }
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| [cfb9c5] | 209 |       if (lastActionOk) {
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 | 210 |         OBSERVE;
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 | 211 |         NOTIFY(ActionQueued);
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 | 212 |         _lastchangedaction = actionqueue[CurrentAction];
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| [601ef8] | 213 |         mtx_queue.lock();
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 | 214 |         CurrentAction++;
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 | 215 |         mtx_queue.unlock();
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| [cfb9c5] | 216 |       }
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| [415ddd] | 217 |       // access actionqueue, hence using mutex
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 | 218 |       mtx_queue.lock();
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 | 219 |       // insert new actions (before [CurrentAction]) if they have been spawned
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 | 220 |       // we must have an extra vector for this, as we cannot change actionqueue
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 | 221 |       // while an action instance is "in-use"
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 | 222 |       insertTempQueue();
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 | 223 |       mtx_queue.unlock();
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| [a87d1e2] | 224 |       status = !isIdle();
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| [415ddd] | 225 |     }
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| [a87d1e2] | 226 |     mtx_queue.lock();
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 | 227 |     const bool tempqueue_notempty = !tempqueue.empty();
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 | 228 |     mtx_queue.unlock();
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 | 229 |     setRunThreadIdle( !((!isIdle()) || tempqueue_notempty) );
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| [415ddd] | 230 |     cond_idle.notify_one();
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 | 231 | //    LOG(1, "DEBUG: End of ActionQueue's run() loop.");
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 | 232 |   } while (!Interrupted);
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 | 233 | }
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 | 234 | 
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 | 235 | void ActionQueue::insertTempQueue()
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 | 236 | {
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 | 237 |   if (!tempqueue.empty()) {
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 | 238 |     ActionQueue_t::iterator InsertionIter = actionqueue.begin();
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 | 239 |     std::advance(InsertionIter, CurrentAction);
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 | 240 |     actionqueue.insert( InsertionIter, tempqueue.begin(), tempqueue.end() );
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 | 241 |     tempqueue.clear();
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 | 242 |   }
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 | 243 | }
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 | 244 | 
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 | 245 | void ActionQueue::wait()
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 | 246 | {
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 | 247 |   boost::unique_lock<boost::mutex> lock(mtx_idle);
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 | 248 |   while(!run_thread_isIdle)
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 | 249 |   {
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 | 250 |       cond_idle.wait(lock);
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 | 251 |   }
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 | 252 | }
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| [74459a] | 253 | #endif
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| [415ddd] | 254 | 
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| [74459a] | 255 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 256 | void ActionQueue::stop()
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 | 257 | {
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 | 258 |   // notify actionqueue thread that we wish to terminate
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 | 259 |   run_thread.interrupt();
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 | 260 |   // wait till it ends
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 | 261 |   run_thread.join();
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| [975b83] | 262 | }
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| [74459a] | 263 | #endif
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| [975b83] | 264 | 
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| [10aee4] | 265 | const Action& ActionQueue::getActionByName(const std::string &name)
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| [1d3563] | 266 | {
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| [ed3944] | 267 |   return AR->getActionByName(name);
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| [1d3563] | 268 | }
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 | 269 | 
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| [a6ceab] | 270 | bool ActionQueue::isActionKnownByName(const std::string &name) const
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| [1d3563] | 271 | {
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| [ed3944] | 272 |   return AR->isActionPresentByName(name);
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| [1d3563] | 273 | }
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 | 274 | 
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| [126867] | 275 | void ActionQueue::registerAction(Action *_action)
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 | 276 | {
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 | 277 |   AR->registerInstance(_action);
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 | 278 | }
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 | 279 | 
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| [46b181] | 280 | void ActionQueue::outputAsCLI(std::ostream &output) const
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 | 281 | {
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| [7fc447] | 282 |   for (ActionQueue_t::const_iterator iter = actionqueue.begin();
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 | 283 |       iter != actionqueue.end();
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| [46b181] | 284 |       ++iter) {
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| [bad589] | 285 |     // skip store-session in printed list
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| [12d946] | 286 |     if ( ((*iter)->getName() != std::string("store-session"))
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 | 287 |         && ((*iter)->getName() != std::string("load-session"))) {
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| [7fc447] | 288 |       if (iter != actionqueue.begin())
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| [bad589] | 289 |         output << " ";
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 | 290 |       (*iter)->outputAsCLI(output);
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 | 291 |     }
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| [46b181] | 292 |   }
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 | 293 |   output << std::endl;
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 | 294 | }
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 | 295 | 
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| [477012] | 296 | void ActionQueue::outputAsPython(std::ostream &output) const
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 | 297 | {
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 | 298 |   const std::string prefix("pyMoleCuilder");
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 | 299 |   output << "import " << prefix << std::endl;
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| [9e4655] | 300 |   output << "# ========================== Stored Session BEGIN ==========================" << std::endl;
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| [7fc447] | 301 |   for (ActionQueue_t::const_iterator iter = actionqueue.begin();
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 | 302 |       iter != actionqueue.end();
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| [477012] | 303 |       ++iter) {
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 | 304 |     // skip store-session in printed list
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| [12d946] | 305 |     if ( ((*iter)->getName() != std::string("store-session"))
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 | 306 |         && ((*iter)->getName() != std::string("load-session")))
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| [477012] | 307 |       (*iter)->outputAsPython(output, prefix);
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 | 308 |   }
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| [9e4655] | 309 |   output << "# =========================== Stored Session END ===========================" << std::endl;
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| [477012] | 310 | }
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 | 311 | 
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| [a6ceab] | 312 | const ActionTrait& ActionQueue::getActionsTrait(const std::string &name) const
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| [690741] | 313 | {
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 | 314 |   // this const_cast is just required as long as we have a non-const getActionByName
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| [10aee4] | 315 |   const Action & action = const_cast<ActionQueue *>(this)->getActionByName(name);
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 | 316 |   return action.Traits;
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| [690741] | 317 | }
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 | 318 | 
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| [6367dd] | 319 | void ActionQueue::addElement(Action* _Action,ActionState::ptr _state)
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 | 320 | {
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 | 321 |   history->addElement(_Action, _state);
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 | 322 | }
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 | 323 | 
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 | 324 | void ActionQueue::clear()
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 | 325 | {
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 | 326 |   history->clear();
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 | 327 | }
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 | 328 | 
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| [601ef8] | 329 | void ActionQueue::clearQueue(const size_t _fromAction)
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| [7f1a1a] | 330 | {
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| [601ef8] | 331 | #ifdef HAVE_ACTION_THREAD
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 | 332 |   mtx_queue.lock();
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 | 333 | #endif
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 | 334 |   LOG(1, "Removing all Actions from position " << _fromAction << " onward.");
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 | 335 |   // free all actions still to be called contained in actionqueue
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 | 336 |   ActionQueue_t::iterator inititer = actionqueue.begin();
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 | 337 |   std::advance(inititer, _fromAction);
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 | 338 |   for (ActionQueue_t::iterator iter = inititer; iter != actionqueue.end(); ++iter)
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| [7f1a1a] | 339 |     delete *iter;
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| [601ef8] | 340 |   actionqueue.erase(inititer, actionqueue.end());
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 | 341 |   LOG(1, "There are " << actionqueue.size() << " remaining Actions.");
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 | 342 | #ifdef HAVE_ACTION_THREAD
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 | 343 |   CurrentAction = actionqueue.size();
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 | 344 |   mtx_queue.unlock();
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 | 345 | #endif
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 | 346 | }
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 | 347 | 
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 | 348 | #ifdef HAVE_ACTION_THREAD
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 | 349 | void ActionQueue::clearTempQueue()
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 | 350 | {
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| [7f1a1a] | 351 |   // free all actions contained in tempqueue
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 | 352 |   for (ActionQueue_t::iterator iter = tempqueue.begin();
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 | 353 |       !tempqueue.empty(); iter = tempqueue.begin()) {
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 | 354 |     delete *iter;
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 | 355 |     tempqueue.erase(iter);
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 | 356 |   }
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| [601ef8] | 357 | }
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 | 358 | 
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 | 359 | void ActionQueue::setRunThreadIdle(const bool _flag)
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 | 360 | {
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| [06b5df] | 361 |   {
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 | 362 |     boost::unique_lock<boost::mutex> lock(mtx_idle);
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| [601ef8] | 363 |     run_thread_isIdle = _flag;
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| [06b5df] | 364 |   }
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| [7f1a1a] | 365 | }
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| [601ef8] | 366 | #endif
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| [6367dd] | 367 | 
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| [690741] | 368 | const ActionQueue::ActionTokens_t ActionQueue::getListOfActions() const
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 | 369 | {
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 | 370 |   ActionTokens_t returnlist;
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 | 371 | 
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 | 372 |   returnlist.insert(
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 | 373 |       returnlist.end(),
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| [ed3944] | 374 |       MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getBeginIter()),
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 | 375 |       MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getEndIter()));
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| [690741] | 376 | 
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 | 377 |   return returnlist;
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 | 378 | }
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 | 379 | 
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| [6367dd] | 380 | void ActionQueue::undoLast()
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 | 381 | {
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 | 382 |         history->undoLast();
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 | 383 | }
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 | 384 | 
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| [c01fec] | 385 | bool ActionQueue::canUndo() const
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 | 386 | {
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 | 387 |   return history->hasUndo();
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 | 388 | }
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 | 389 | 
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| [6367dd] | 390 | void ActionQueue::redoLast()
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 | 391 | {
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 | 392 |         history->redoLast();
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 | 393 | }
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 | 394 | 
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| [c01fec] | 395 | bool ActionQueue::canRedo() const
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 | 396 | {
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 | 397 |   return history->hasRedo();
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 | 398 | }
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 | 399 | 
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| [f3db60] | 400 | bool ActionQueue::isDryRun(const Action *_nextaction) const
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 | 401 | {
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 | 402 |   bool status = dryrun_flag;
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 | 403 |   status &= (_nextaction->getName() != "no-dry-run");
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 | 404 |   return status;
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 | 405 | }
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| [6367dd] | 406 | 
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| [628577] | 407 | CONSTRUCT_SINGLETON(ActionQueue)
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