| [628577] | 1 | /*
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 | 2 |  * Project: MoleCuilder
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 | 3 |  * Description: creates and alters molecular systems
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 | 4 |  * Copyright (C)  2013 Frederik Heber. All rights reserved.
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 | 5 |  * 
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 | 6 |  *
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 | 7 |  *   This file is part of MoleCuilder.
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 | 8 |  *
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 | 9 |  *    MoleCuilder is free software: you can redistribute it and/or modify
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 | 10 |  *    it under the terms of the GNU General Public License as published by
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 | 11 |  *    the Free Software Foundation, either version 2 of the License, or
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 | 12 |  *    (at your option) any later version.
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 | 13 |  *
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 | 14 |  *    MoleCuilder is distributed in the hope that it will be useful,
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 | 15 |  *    but WITHOUT ANY WARRANTY; without even the implied warranty of
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 | 16 |  *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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 | 17 |  *    GNU General Public License for more details.
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 | 18 |  *
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 | 19 |  *    You should have received a copy of the GNU General Public License
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 | 20 |  *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>.
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 | 21 |  */
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 | 22 | 
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 | 23 | /*
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 | 24 |  * ActionQueue.cpp
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 | 25 |  *
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 | 26 |  *  Created on: Aug 16, 2013
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 | 27 |  *      Author: heber
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 | 28 |  */
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 | 29 | 
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 | 30 | // include config.h
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 | 31 | #ifdef HAVE_CONFIG_H
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 | 32 | #include <config.h>
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 | 33 | #endif
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 | 34 | 
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 | 35 | #include "CodePatterns/MemDebug.hpp"
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 | 36 | 
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| [1d3563] | 37 | #include "Actions/ActionQueue.hpp"
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| [628577] | 38 | 
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| [690741] | 39 | #include "CodePatterns/Assert.hpp"
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 | 40 | #include "CodePatterns/IteratorAdaptors.hpp"
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| [46b181] | 41 | #include "CodePatterns/Log.hpp"
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| [628577] | 42 | #include "CodePatterns/Singleton_impl.hpp"
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 | 43 | 
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| [415ddd] | 44 | #include <boost/date_time/posix_time/posix_time.hpp>
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 | 45 | #include <boost/version.hpp>
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| [601ef8] | 46 | #include <iterator>
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| [46b181] | 47 | #include <string>
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 | 48 | #include <sstream>
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| [690741] | 49 | #include <vector>
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 | 50 | 
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| [0d4168] | 51 | #include "Actions/ActionExceptions.hpp"
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| [6367dd] | 52 | #include "Actions/ActionHistory.hpp"
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| [ed3944] | 53 | #include "Actions/ActionRegistry.hpp"
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| [0d4168] | 54 | #include "World.hpp"
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| [ed3944] | 55 | 
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| [628577] | 56 | using namespace MoleCuilder;
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 | 57 | 
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| [29b52b] | 58 | const Action* ActionQueue::_lastchangedaction = NULL;
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 | 59 | 
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| [ed3944] | 60 | ActionQueue::ActionQueue() :
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| [29b52b] | 61 |     Observable("ActionQueue"),
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| [6367dd] | 62 |     AR(new ActionRegistry()),
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| [af5384] | 63 |     history(new ActionHistory),
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| [74459a] | 64 | #ifndef HAVE_ACTION_THREAD
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| [a61dbb] | 65 |     lastActionOk(true)
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| [74459a] | 66 | #else
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| [601ef8] | 67 |     CurrentAction(0),
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| [a61dbb] | 68 |     lastActionOk(true),
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| [415ddd] | 69 |     run_thread(boost::bind(&ActionQueue::run, this)),
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 | 70 |     run_thread_isIdle(true)
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| [74459a] | 71 | #endif
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| [29b52b] | 72 | {
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 | 73 |   // channels of observable
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 | 74 |   Channels *OurChannel = new Channels;
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 | 75 |   NotificationChannels.insert( std::make_pair(static_cast<Observable *>(this), OurChannel) );
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 | 76 |   // add instance for each notification type
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 | 77 |   for (size_t type = 0; type < NotificationType_MAX; ++type)
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 | 78 |     OurChannel->addChannel(type);
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 | 79 | }
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| [628577] | 80 | 
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 | 81 | ActionQueue::~ActionQueue()
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| [ed3944] | 82 | {
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| [74459a] | 83 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 84 |   stop();
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| [601ef8] | 85 | 
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 | 86 |   clearTempQueue();
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| [74459a] | 87 | #endif
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| [415ddd] | 88 | 
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| [7f1a1a] | 89 |   clearQueue();
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| [af5384] | 90 | 
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| [6367dd] | 91 |   delete history;
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| [ed3944] | 92 |   delete AR;
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 | 93 | }
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| [628577] | 94 | 
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| [f54cda] | 95 | void ActionQueue::queueAction(const std::string &name, enum Action::QueryOptions state)
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| [05c989] | 96 | {
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| [7f1a1a] | 97 |   const Action * const registryaction = AR->getActionByName(name);
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 | 98 |   queueAction(registryaction, state);
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| [f54cda] | 99 | }
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 | 100 | 
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| [7f1a1a] | 101 | void ActionQueue::queueAction(const Action * const _action, enum Action::QueryOptions state)
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| [f54cda] | 102 | {
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| [af5384] | 103 |   Action *newaction = _action->clone(state);
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 | 104 |   newaction->prepare(state);
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| [74459a] | 105 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 106 |   mtx_queue.lock();
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| [74459a] | 107 | #endif
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| [7fc447] | 108 |   actionqueue.push_back( newaction );
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| [74459a] | 109 | #ifndef HAVE_ACTION_THREAD
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 | 110 |   try {
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 | 111 |     newaction->call();
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| [a61dbb] | 112 |     lastActionOk = true;
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| [74459a] | 113 |   } catch(ActionFailureException &e) {
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 | 114 |     std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl;
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 | 115 |     World::getInstance().setExitFlag(5);
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| [601ef8] | 116 |     clearQueue(actionqueue.size()-1);
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| [a61dbb] | 117 |     lastActionOk = false;
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| [601ef8] | 118 |     std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [11d433] | 119 |   } catch (std::exception &e) {
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 | 120 |     pushStatus("FAIL: General exception caught, aborting.");
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 | 121 |     World::getInstance().setExitFlag(134);
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| [601ef8] | 122 |     clearQueue(actionqueue.size()-1);
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| [11d433] | 123 |     lastActionOk = false;
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| [601ef8] | 124 |     std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [74459a] | 125 |   }
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| [cfb9c5] | 126 |   if (lastActionOk) {
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 | 127 |     OBSERVE;
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 | 128 |     NOTIFY(ActionQueued);
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 | 129 |     _lastchangedaction = newaction;
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 | 130 |   }
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| [74459a] | 131 | #else
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| [601ef8] | 132 |   setRunThreadIdle(CurrentAction == actionqueue.size());
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| [415ddd] | 133 |   mtx_queue.unlock();
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| [74459a] | 134 | #endif
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| [05c989] | 135 | }
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 | 136 | 
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| [975b83] | 137 | void ActionQueue::insertAction(Action *_action, enum Action::QueryOptions state)
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 | 138 | {
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| [74459a] | 139 | #ifndef HAVE_ACTION_THREAD
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 | 140 |   queueAction(_action, state);
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 | 141 | #else
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| [415ddd] | 142 |   Action *newaction = _action->clone(state);
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 | 143 |   newaction->prepare(state);
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 | 144 |   mtx_queue.lock();
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 | 145 |   tempqueue.push_back( newaction );
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| [601ef8] | 146 |   setRunThreadIdle( !((CurrentAction != actionqueue.size()) || !tempqueue.empty()) );
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| [415ddd] | 147 |   mtx_queue.unlock();
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| [74459a] | 148 | #endif
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| [415ddd] | 149 | }
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 | 150 | 
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| [74459a] | 151 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 152 | void ActionQueue::run()
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 | 153 | {
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 | 154 |   bool Interrupted = false;
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 | 155 |   do {
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 | 156 |     // sleep for some time and wait for queue to fill up again
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 | 157 |     try {
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 | 158 | #if BOOST_VERSION < 105000
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 | 159 |       run_thread.sleep(boost::get_system_time() + boost::posix_time::milliseconds(100));
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 | 160 | #else
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| [d93b4b3] | 161 |       boost::this_thread::sleep_for(boost::chrono::milliseconds(100));
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| [415ddd] | 162 | #endif
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 | 163 |     } catch(boost::thread_interrupted &e) {
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 | 164 |       LOG(2, "INFO: ActionQueue has received stop signal.");
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 | 165 |       Interrupted = true;
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 | 166 |     }
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 | 167 | //    LOG(1, "DEBUG: Start of ActionQueue's run() loop.");
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 | 168 |     // call all currently present Actions
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 | 169 |     mtx_queue.lock();
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 | 170 |     insertTempQueue();
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 | 171 |     bool status = (CurrentAction != actionqueue.size());
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 | 172 |     mtx_queue.unlock();
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 | 173 |     while (status) {
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 | 174 |       //      boost::this_thread::disable_interruption di;
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 | 175 |       LOG(0, "Calling Action " << actionqueue[CurrentAction]->getName() << " ... ");
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 | 176 |       try {
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 | 177 |         actionqueue[CurrentAction]->call();
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| [0b6b77] | 178 |         pushStatus("SUCCESS: Action "+actionqueue[CurrentAction]->getName()+" successful.");
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| [a61dbb] | 179 |         lastActionOk = true;
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| [415ddd] | 180 |       } catch(ActionFailureException &e) {
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| [0b6b77] | 181 |         pushStatus("FAIL: Action "+*boost::get_error_info<ActionNameString>(e)+" has failed.");
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| [415ddd] | 182 |         World::getInstance().setExitFlag(5);
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| [601ef8] | 183 |         clearQueue(CurrentAction);
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 | 184 |         clearTempQueue();
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| [a61dbb] | 185 |         lastActionOk = false;
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| [601ef8] | 186 |         std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [11d433] | 187 |       } catch (std::exception &e) {
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 | 188 |         pushStatus("FAIL: General exception caught, aborting.");
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 | 189 |         World::getInstance().setExitFlag(134);
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| [601ef8] | 190 |         clearQueue(CurrentAction);
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 | 191 |         clearTempQueue();
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 | 192 |         std::cerr << "Remaining Actions cleared from queue." << std::endl;
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| [415ddd] | 193 |       }
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| [cfb9c5] | 194 |       if (lastActionOk) {
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 | 195 |         OBSERVE;
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 | 196 |         NOTIFY(ActionQueued);
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 | 197 |         _lastchangedaction = actionqueue[CurrentAction];
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| [601ef8] | 198 |         mtx_queue.lock();
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 | 199 |         CurrentAction++;
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 | 200 |         mtx_queue.unlock();
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| [cfb9c5] | 201 |       }
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| [415ddd] | 202 |       // access actionqueue, hence using mutex
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 | 203 |       mtx_queue.lock();
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 | 204 |       // insert new actions (before [CurrentAction]) if they have been spawned
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 | 205 |       // we must have an extra vector for this, as we cannot change actionqueue
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 | 206 |       // while an action instance is "in-use"
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 | 207 |       insertTempQueue();
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 | 208 |       status = (CurrentAction != actionqueue.size());
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 | 209 |       mtx_queue.unlock();
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 | 210 |     }
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| [601ef8] | 211 |     setRunThreadIdle( !((CurrentAction != actionqueue.size()) || !tempqueue.empty()) );
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| [415ddd] | 212 |     cond_idle.notify_one();
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 | 213 | //    LOG(1, "DEBUG: End of ActionQueue's run() loop.");
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 | 214 |   } while (!Interrupted);
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 | 215 | }
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 | 216 | 
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 | 217 | void ActionQueue::insertTempQueue()
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 | 218 | {
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 | 219 |   if (!tempqueue.empty()) {
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 | 220 |     ActionQueue_t::iterator InsertionIter = actionqueue.begin();
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 | 221 |     std::advance(InsertionIter, CurrentAction);
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 | 222 |     actionqueue.insert( InsertionIter, tempqueue.begin(), tempqueue.end() );
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 | 223 |     tempqueue.clear();
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 | 224 |   }
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 | 225 | }
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 | 226 | 
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 | 227 | void ActionQueue::wait()
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 | 228 | {
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 | 229 |   boost::unique_lock<boost::mutex> lock(mtx_idle);
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 | 230 |   while(!run_thread_isIdle)
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 | 231 |   {
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 | 232 |       cond_idle.wait(lock);
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 | 233 |   }
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 | 234 | }
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| [74459a] | 235 | #endif
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| [415ddd] | 236 | 
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| [74459a] | 237 | #ifdef HAVE_ACTION_THREAD
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| [415ddd] | 238 | void ActionQueue::stop()
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 | 239 | {
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 | 240 |   // notify actionqueue thread that we wish to terminate
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 | 241 |   run_thread.interrupt();
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 | 242 |   // wait till it ends
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 | 243 |   run_thread.join();
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| [975b83] | 244 | }
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| [74459a] | 245 | #endif
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| [975b83] | 246 | 
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| [a6ceab] | 247 | Action* ActionQueue::getActionByName(const std::string &name)
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| [1d3563] | 248 | {
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| [ed3944] | 249 |   return AR->getActionByName(name);
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| [1d3563] | 250 | }
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 | 251 | 
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| [a6ceab] | 252 | bool ActionQueue::isActionKnownByName(const std::string &name) const
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| [1d3563] | 253 | {
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| [ed3944] | 254 |   return AR->isActionPresentByName(name);
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| [1d3563] | 255 | }
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 | 256 | 
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| [126867] | 257 | void ActionQueue::registerAction(Action *_action)
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 | 258 | {
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 | 259 |   AR->registerInstance(_action);
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 | 260 | }
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 | 261 | 
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| [46b181] | 262 | void ActionQueue::outputAsCLI(std::ostream &output) const
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 | 263 | {
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| [7fc447] | 264 |   for (ActionQueue_t::const_iterator iter = actionqueue.begin();
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 | 265 |       iter != actionqueue.end();
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| [46b181] | 266 |       ++iter) {
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| [bad589] | 267 |     // skip store-session in printed list
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| [12d946] | 268 |     if ( ((*iter)->getName() != std::string("store-session"))
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 | 269 |         && ((*iter)->getName() != std::string("load-session"))) {
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| [7fc447] | 270 |       if (iter != actionqueue.begin())
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| [bad589] | 271 |         output << " ";
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 | 272 |       (*iter)->outputAsCLI(output);
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 | 273 |     }
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| [46b181] | 274 |   }
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 | 275 |   output << std::endl;
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 | 276 | }
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 | 277 | 
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| [477012] | 278 | void ActionQueue::outputAsPython(std::ostream &output) const
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 | 279 | {
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 | 280 |   const std::string prefix("pyMoleCuilder");
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 | 281 |   output << "import " << prefix << std::endl;
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| [9e4655] | 282 |   output << "# ========================== Stored Session BEGIN ==========================" << std::endl;
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| [7fc447] | 283 |   for (ActionQueue_t::const_iterator iter = actionqueue.begin();
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 | 284 |       iter != actionqueue.end();
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| [477012] | 285 |       ++iter) {
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 | 286 |     // skip store-session in printed list
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| [12d946] | 287 |     if ( ((*iter)->getName() != std::string("store-session"))
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 | 288 |         && ((*iter)->getName() != std::string("load-session")))
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| [477012] | 289 |       (*iter)->outputAsPython(output, prefix);
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 | 290 |   }
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| [9e4655] | 291 |   output << "# =========================== Stored Session END ===========================" << std::endl;
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| [477012] | 292 | }
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 | 293 | 
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| [a6ceab] | 294 | const ActionTrait& ActionQueue::getActionsTrait(const std::string &name) const
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| [690741] | 295 | {
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 | 296 |   // this const_cast is just required as long as we have a non-const getActionByName
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 | 297 |   const Action * const action = const_cast<ActionQueue *>(this)->getActionByName(name);
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 | 298 |   return action->Traits;
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 | 299 | }
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 | 300 | 
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| [6367dd] | 301 | void ActionQueue::addElement(Action* _Action,ActionState::ptr _state)
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 | 302 | {
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 | 303 |   history->addElement(_Action, _state);
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 | 304 | }
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 | 305 | 
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 | 306 | void ActionQueue::clear()
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 | 307 | {
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 | 308 |   history->clear();
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 | 309 | }
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 | 310 | 
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| [601ef8] | 311 | void ActionQueue::clearQueue(const size_t _fromAction)
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| [7f1a1a] | 312 | {
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| [601ef8] | 313 | #ifdef HAVE_ACTION_THREAD
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 | 314 |   mtx_queue.lock();
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 | 315 | #endif
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 | 316 |   LOG(1, "Removing all Actions from position " << _fromAction << " onward.");
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 | 317 |   // free all actions still to be called contained in actionqueue
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 | 318 |   ActionQueue_t::iterator inititer = actionqueue.begin();
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 | 319 |   std::advance(inititer, _fromAction);
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 | 320 |   for (ActionQueue_t::iterator iter = inititer; iter != actionqueue.end(); ++iter)
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| [7f1a1a] | 321 |     delete *iter;
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| [601ef8] | 322 |   actionqueue.erase(inititer, actionqueue.end());
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 | 323 |   LOG(1, "There are " << actionqueue.size() << " remaining Actions.");
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 | 324 | #ifdef HAVE_ACTION_THREAD
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 | 325 |   CurrentAction = actionqueue.size();
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 | 326 |   mtx_queue.unlock();
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 | 327 | #endif
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 | 328 | }
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 | 329 | 
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 | 330 | #ifdef HAVE_ACTION_THREAD
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 | 331 | void ActionQueue::clearTempQueue()
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 | 332 | {
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| [7f1a1a] | 333 |   // free all actions contained in tempqueue
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 | 334 |   for (ActionQueue_t::iterator iter = tempqueue.begin();
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 | 335 |       !tempqueue.empty(); iter = tempqueue.begin()) {
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 | 336 |     delete *iter;
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 | 337 |     tempqueue.erase(iter);
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 | 338 |   }
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| [601ef8] | 339 | }
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 | 340 | 
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 | 341 | void ActionQueue::setRunThreadIdle(const bool _flag)
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 | 342 | {
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| [06b5df] | 343 |   {
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 | 344 |     boost::unique_lock<boost::mutex> lock(mtx_idle);
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| [601ef8] | 345 |     run_thread_isIdle = _flag;
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| [06b5df] | 346 |   }
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| [7f1a1a] | 347 | }
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| [601ef8] | 348 | #endif
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| [6367dd] | 349 | 
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| [690741] | 350 | const ActionQueue::ActionTokens_t ActionQueue::getListOfActions() const
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 | 351 | {
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 | 352 |   ActionTokens_t returnlist;
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 | 353 | 
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 | 354 |   returnlist.insert(
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 | 355 |       returnlist.end(),
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| [ed3944] | 356 |       MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getBeginIter()),
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 | 357 |       MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getEndIter()));
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| [690741] | 358 | 
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 | 359 |   return returnlist;
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 | 360 | }
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 | 361 | 
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| [6367dd] | 362 | void ActionQueue::undoLast()
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 | 363 | {
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 | 364 |         history->undoLast();
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 | 365 | }
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 | 366 | 
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| [c01fec] | 367 | bool ActionQueue::canUndo() const
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 | 368 | {
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 | 369 |   return history->hasUndo();
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 | 370 | }
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 | 371 | 
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| [6367dd] | 372 | void ActionQueue::redoLast()
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 | 373 | {
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 | 374 |         history->redoLast();
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 | 375 | }
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 | 376 | 
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| [c01fec] | 377 | bool ActionQueue::canRedo() const
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 | 378 | {
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 | 379 |   return history->hasRedo();
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 | 380 | }
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 | 381 | 
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| [6367dd] | 382 | 
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| [628577] | 383 | CONSTRUCT_SINGLETON(ActionQueue)
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