| [628577] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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|  | 4 | * Copyright (C)  2013 Frederik Heber. All rights reserved. | 
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|  | 5 | * | 
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|  | 6 | * | 
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|  | 7 | *   This file is part of MoleCuilder. | 
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|  | 8 | * | 
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|  | 9 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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|  | 10 | *    it under the terms of the GNU General Public License as published by | 
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|  | 11 | *    the Free Software Foundation, either version 2 of the License, or | 
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|  | 12 | *    (at your option) any later version. | 
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|  | 13 | * | 
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|  | 14 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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|  | 15 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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|  | 16 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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|  | 17 | *    GNU General Public License for more details. | 
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|  | 18 | * | 
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|  | 19 | *    You should have received a copy of the GNU General Public License | 
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|  | 20 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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|  | 21 | */ | 
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|  | 22 |  | 
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|  | 23 | /* | 
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|  | 24 | * ActionQueue.cpp | 
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|  | 25 | * | 
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|  | 26 | *  Created on: Aug 16, 2013 | 
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|  | 27 | *      Author: heber | 
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|  | 28 | */ | 
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|  | 29 |  | 
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|  | 30 | // include config.h | 
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|  | 31 | #ifdef HAVE_CONFIG_H | 
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|  | 32 | #include <config.h> | 
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|  | 33 | #endif | 
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|  | 34 |  | 
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| [9eb71b3] | 35 | //#include "CodePatterns/MemDebug.hpp" | 
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| [628577] | 36 |  | 
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| [1d3563] | 37 | #include "Actions/ActionQueue.hpp" | 
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| [628577] | 38 |  | 
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| [690741] | 39 | #include "CodePatterns/Assert.hpp" | 
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|  | 40 | #include "CodePatterns/IteratorAdaptors.hpp" | 
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| [46b181] | 41 | #include "CodePatterns/Log.hpp" | 
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| [628577] | 42 | #include "CodePatterns/Singleton_impl.hpp" | 
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|  | 43 |  | 
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| [415ddd] | 44 | #include <boost/date_time/posix_time/posix_time.hpp> | 
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|  | 45 | #include <boost/version.hpp> | 
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| [601ef8] | 46 | #include <iterator> | 
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| [46b181] | 47 | #include <string> | 
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|  | 48 | #include <sstream> | 
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| [690741] | 49 | #include <vector> | 
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|  | 50 |  | 
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| [0d4168] | 51 | #include "Actions/ActionExceptions.hpp" | 
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| [6367dd] | 52 | #include "Actions/ActionHistory.hpp" | 
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| [ed3944] | 53 | #include "Actions/ActionRegistry.hpp" | 
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| [0d4168] | 54 | #include "World.hpp" | 
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| [ed3944] | 55 |  | 
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| [628577] | 56 | using namespace MoleCuilder; | 
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|  | 57 |  | 
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| [29b52b] | 58 | const Action* ActionQueue::_lastchangedaction = NULL; | 
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|  | 59 |  | 
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| [ed3944] | 60 | ActionQueue::ActionQueue() : | 
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| [29b52b] | 61 | Observable("ActionQueue"), | 
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| [6367dd] | 62 | AR(new ActionRegistry()), | 
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| [af5384] | 63 | history(new ActionHistory), | 
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| [f3db60] | 64 | lastActionOk(true), | 
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| [601ef8] | 65 | CurrentAction(0), | 
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| [a87d1e2] | 66 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 67 | run_thread(boost::bind(&ActionQueue::run, this)), | 
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| [f3db60] | 68 | run_thread_isIdle(true), | 
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| [74459a] | 69 | #endif | 
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| [f3db60] | 70 | dryrun_flag(false) | 
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| [29b52b] | 71 | { | 
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|  | 72 | // channels of observable | 
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|  | 73 | Channels *OurChannel = new Channels; | 
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| [574d377] | 74 | Observable::insertNotificationChannel( std::make_pair(static_cast<Observable *>(this), OurChannel) ); | 
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| [29b52b] | 75 | // add instance for each notification type | 
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|  | 76 | for (size_t type = 0; type < NotificationType_MAX; ++type) | 
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|  | 77 | OurChannel->addChannel(type); | 
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|  | 78 | } | 
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| [628577] | 79 |  | 
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|  | 80 | ActionQueue::~ActionQueue() | 
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| [ed3944] | 81 | { | 
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| [74459a] | 82 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 83 | stop(); | 
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| [601ef8] | 84 |  | 
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|  | 85 | clearTempQueue(); | 
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| [74459a] | 86 | #endif | 
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| [415ddd] | 87 |  | 
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| [7f1a1a] | 88 | clearQueue(); | 
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| [af5384] | 89 |  | 
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| [6367dd] | 90 | delete history; | 
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| [ed3944] | 91 | delete AR; | 
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|  | 92 | } | 
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| [628577] | 93 |  | 
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| [f54cda] | 94 | void ActionQueue::queueAction(const std::string &name, enum Action::QueryOptions state) | 
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| [05c989] | 95 | { | 
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| [10aee4] | 96 | const Action & registryaction = AR->getActionByName(name); | 
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|  | 97 | queueAction(®istryaction, state); | 
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| [f54cda] | 98 | } | 
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|  | 99 |  | 
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| [7f1a1a] | 100 | void ActionQueue::queueAction(const Action * const _action, enum Action::QueryOptions state) | 
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| [f54cda] | 101 | { | 
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| [af5384] | 102 | Action *newaction = _action->clone(state); | 
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|  | 103 | newaction->prepare(state); | 
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| [74459a] | 104 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 105 | mtx_queue.lock(); | 
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| [74459a] | 106 | #endif | 
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| [7fc447] | 107 | actionqueue.push_back( newaction ); | 
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| [74459a] | 108 | #ifndef HAVE_ACTION_THREAD | 
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|  | 109 | try { | 
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| [a87d1e2] | 110 | if (!isDryRun(newaction)) { | 
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|  | 111 | CurrentAction = actionqueue.size()-1; | 
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| [f3db60] | 112 | newaction->call(); | 
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| [a87d1e2] | 113 | CurrentAction = actionqueue.size(); | 
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|  | 114 | } | 
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| [a61dbb] | 115 | lastActionOk = true; | 
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| [74459a] | 116 | } catch(ActionFailureException &e) { | 
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|  | 117 | std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl; | 
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|  | 118 | World::getInstance().setExitFlag(5); | 
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| [601ef8] | 119 | clearQueue(actionqueue.size()-1); | 
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| [a61dbb] | 120 | lastActionOk = false; | 
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| [601ef8] | 121 | std::cerr << "Remaining Actions cleared from queue." << std::endl; | 
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| [11d433] | 122 | } catch (std::exception &e) { | 
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|  | 123 | pushStatus("FAIL: General exception caught, aborting."); | 
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|  | 124 | World::getInstance().setExitFlag(134); | 
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| [601ef8] | 125 | clearQueue(actionqueue.size()-1); | 
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| [11d433] | 126 | lastActionOk = false; | 
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| [601ef8] | 127 | std::cerr << "Remaining Actions cleared from queue." << std::endl; | 
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| [74459a] | 128 | } | 
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| [cfb9c5] | 129 | if (lastActionOk) { | 
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|  | 130 | OBSERVE; | 
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|  | 131 | NOTIFY(ActionQueued); | 
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|  | 132 | _lastchangedaction = newaction; | 
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|  | 133 | } | 
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| [74459a] | 134 | #else | 
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| [415ddd] | 135 | mtx_queue.unlock(); | 
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| [a87d1e2] | 136 | setRunThreadIdle(isIdle()); | 
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| [74459a] | 137 | #endif | 
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| [05c989] | 138 | } | 
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|  | 139 |  | 
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| [975b83] | 140 | void ActionQueue::insertAction(Action *_action, enum Action::QueryOptions state) | 
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|  | 141 | { | 
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| [74459a] | 142 | #ifndef HAVE_ACTION_THREAD | 
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|  | 143 | queueAction(_action, state); | 
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|  | 144 | #else | 
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| [415ddd] | 145 | Action *newaction = _action->clone(state); | 
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|  | 146 | newaction->prepare(state); | 
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|  | 147 | mtx_queue.lock(); | 
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|  | 148 | tempqueue.push_back( newaction ); | 
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| [a87d1e2] | 149 | const bool tempqueue_notempty = !tempqueue.empty(); | 
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| [415ddd] | 150 | mtx_queue.unlock(); | 
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| [a87d1e2] | 151 | setRunThreadIdle( !((!isIdle()) || tempqueue_notempty) ); | 
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|  | 152 | #endif | 
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|  | 153 | } | 
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|  | 154 |  | 
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|  | 155 | bool ActionQueue::isIdle() const | 
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|  | 156 | { | 
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|  | 157 | #ifdef HAVE_ACTION_THREAD | 
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|  | 158 | boost::unique_lock<boost::mutex> lock(mtx_queue); | 
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| [74459a] | 159 | #endif | 
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| [a87d1e2] | 160 | bool status = (CurrentAction == actionqueue.size()); | 
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|  | 161 | return status; | 
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| [415ddd] | 162 | } | 
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|  | 163 |  | 
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| [74459a] | 164 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 165 | void ActionQueue::run() | 
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|  | 166 | { | 
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|  | 167 | bool Interrupted = false; | 
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|  | 168 | do { | 
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|  | 169 | // sleep for some time and wait for queue to fill up again | 
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|  | 170 | try { | 
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|  | 171 | #if BOOST_VERSION < 105000 | 
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|  | 172 | run_thread.sleep(boost::get_system_time() + boost::posix_time::milliseconds(100)); | 
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|  | 173 | #else | 
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| [d93b4b3] | 174 | boost::this_thread::sleep_for(boost::chrono::milliseconds(100)); | 
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| [415ddd] | 175 | #endif | 
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|  | 176 | } catch(boost::thread_interrupted &e) { | 
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|  | 177 | LOG(2, "INFO: ActionQueue has received stop signal."); | 
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|  | 178 | Interrupted = true; | 
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|  | 179 | } | 
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|  | 180 | //    LOG(1, "DEBUG: Start of ActionQueue's run() loop."); | 
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|  | 181 | // call all currently present Actions | 
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|  | 182 | mtx_queue.lock(); | 
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|  | 183 | insertTempQueue(); | 
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|  | 184 | mtx_queue.unlock(); | 
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| [a87d1e2] | 185 | bool status = !isIdle(); | 
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| [415ddd] | 186 | while (status) { | 
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|  | 187 | //      boost::this_thread::disable_interruption di; | 
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|  | 188 | LOG(0, "Calling Action " << actionqueue[CurrentAction]->getName() << " ... "); | 
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|  | 189 | try { | 
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| [f3db60] | 190 | if (!isDryRun(actionqueue[CurrentAction])) | 
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|  | 191 | actionqueue[CurrentAction]->call(); | 
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| [0b6b77] | 192 | pushStatus("SUCCESS: Action "+actionqueue[CurrentAction]->getName()+" successful."); | 
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| [a61dbb] | 193 | lastActionOk = true; | 
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| [415ddd] | 194 | } catch(ActionFailureException &e) { | 
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| [0b6b77] | 195 | pushStatus("FAIL: Action "+*boost::get_error_info<ActionNameString>(e)+" has failed."); | 
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| [415ddd] | 196 | World::getInstance().setExitFlag(5); | 
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| [601ef8] | 197 | clearQueue(CurrentAction); | 
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|  | 198 | clearTempQueue(); | 
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| [a61dbb] | 199 | lastActionOk = false; | 
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| [601ef8] | 200 | std::cerr << "Remaining Actions cleared from queue." << std::endl; | 
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| [11d433] | 201 | } catch (std::exception &e) { | 
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|  | 202 | pushStatus("FAIL: General exception caught, aborting."); | 
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|  | 203 | World::getInstance().setExitFlag(134); | 
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| [601ef8] | 204 | clearQueue(CurrentAction); | 
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|  | 205 | clearTempQueue(); | 
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| [d8255b] | 206 | lastActionOk = false; | 
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| [601ef8] | 207 | std::cerr << "Remaining Actions cleared from queue." << std::endl; | 
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| [415ddd] | 208 | } | 
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| [cfb9c5] | 209 | if (lastActionOk) { | 
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|  | 210 | OBSERVE; | 
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|  | 211 | NOTIFY(ActionQueued); | 
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|  | 212 | _lastchangedaction = actionqueue[CurrentAction]; | 
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| [601ef8] | 213 | mtx_queue.lock(); | 
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|  | 214 | CurrentAction++; | 
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|  | 215 | mtx_queue.unlock(); | 
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| [cfb9c5] | 216 | } | 
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| [415ddd] | 217 | // access actionqueue, hence using mutex | 
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|  | 218 | mtx_queue.lock(); | 
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|  | 219 | // insert new actions (before [CurrentAction]) if they have been spawned | 
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|  | 220 | // we must have an extra vector for this, as we cannot change actionqueue | 
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|  | 221 | // while an action instance is "in-use" | 
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|  | 222 | insertTempQueue(); | 
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|  | 223 | mtx_queue.unlock(); | 
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| [a87d1e2] | 224 | status = !isIdle(); | 
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| [415ddd] | 225 | } | 
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| [a87d1e2] | 226 | mtx_queue.lock(); | 
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|  | 227 | const bool tempqueue_notempty = !tempqueue.empty(); | 
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|  | 228 | mtx_queue.unlock(); | 
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|  | 229 | setRunThreadIdle( !((!isIdle()) || tempqueue_notempty) ); | 
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| [415ddd] | 230 | cond_idle.notify_one(); | 
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|  | 231 | //    LOG(1, "DEBUG: End of ActionQueue's run() loop."); | 
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|  | 232 | } while (!Interrupted); | 
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|  | 233 | } | 
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|  | 234 |  | 
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|  | 235 | void ActionQueue::insertTempQueue() | 
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|  | 236 | { | 
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|  | 237 | if (!tempqueue.empty()) { | 
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|  | 238 | ActionQueue_t::iterator InsertionIter = actionqueue.begin(); | 
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|  | 239 | std::advance(InsertionIter, CurrentAction); | 
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|  | 240 | actionqueue.insert( InsertionIter, tempqueue.begin(), tempqueue.end() ); | 
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|  | 241 | tempqueue.clear(); | 
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|  | 242 | } | 
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|  | 243 | } | 
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|  | 244 |  | 
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|  | 245 | void ActionQueue::wait() | 
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|  | 246 | { | 
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|  | 247 | boost::unique_lock<boost::mutex> lock(mtx_idle); | 
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|  | 248 | while(!run_thread_isIdle) | 
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|  | 249 | { | 
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|  | 250 | cond_idle.wait(lock); | 
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|  | 251 | } | 
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|  | 252 | } | 
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| [74459a] | 253 | #endif | 
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| [415ddd] | 254 |  | 
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| [74459a] | 255 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 256 | void ActionQueue::stop() | 
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|  | 257 | { | 
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|  | 258 | // notify actionqueue thread that we wish to terminate | 
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|  | 259 | run_thread.interrupt(); | 
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|  | 260 | // wait till it ends | 
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|  | 261 | run_thread.join(); | 
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| [975b83] | 262 | } | 
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| [74459a] | 263 | #endif | 
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| [975b83] | 264 |  | 
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| [10aee4] | 265 | const Action& ActionQueue::getActionByName(const std::string &name) | 
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| [1d3563] | 266 | { | 
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| [ed3944] | 267 | return AR->getActionByName(name); | 
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| [1d3563] | 268 | } | 
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|  | 269 |  | 
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| [a6ceab] | 270 | bool ActionQueue::isActionKnownByName(const std::string &name) const | 
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| [1d3563] | 271 | { | 
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| [ed3944] | 272 | return AR->isActionPresentByName(name); | 
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| [1d3563] | 273 | } | 
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|  | 274 |  | 
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| [126867] | 275 | void ActionQueue::registerAction(Action *_action) | 
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|  | 276 | { | 
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|  | 277 | AR->registerInstance(_action); | 
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|  | 278 | } | 
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|  | 279 |  | 
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| [46b181] | 280 | void ActionQueue::outputAsCLI(std::ostream &output) const | 
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|  | 281 | { | 
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| [7fc447] | 282 | for (ActionQueue_t::const_iterator iter = actionqueue.begin(); | 
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|  | 283 | iter != actionqueue.end(); | 
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| [46b181] | 284 | ++iter) { | 
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| [bad589] | 285 | // skip store-session in printed list | 
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| [12d946] | 286 | if ( ((*iter)->getName() != std::string("store-session")) | 
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|  | 287 | && ((*iter)->getName() != std::string("load-session"))) { | 
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| [7fc447] | 288 | if (iter != actionqueue.begin()) | 
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| [bad589] | 289 | output << " "; | 
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|  | 290 | (*iter)->outputAsCLI(output); | 
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|  | 291 | } | 
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| [46b181] | 292 | } | 
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|  | 293 | output << std::endl; | 
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|  | 294 | } | 
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|  | 295 |  | 
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| [477012] | 296 | void ActionQueue::outputAsPython(std::ostream &output) const | 
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|  | 297 | { | 
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|  | 298 | const std::string prefix("pyMoleCuilder"); | 
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|  | 299 | output << "import " << prefix << std::endl; | 
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| [9e4655] | 300 | output << "# ========================== Stored Session BEGIN ==========================" << std::endl; | 
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| [7fc447] | 301 | for (ActionQueue_t::const_iterator iter = actionqueue.begin(); | 
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|  | 302 | iter != actionqueue.end(); | 
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| [477012] | 303 | ++iter) { | 
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|  | 304 | // skip store-session in printed list | 
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| [12d946] | 305 | if ( ((*iter)->getName() != std::string("store-session")) | 
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|  | 306 | && ((*iter)->getName() != std::string("load-session"))) | 
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| [477012] | 307 | (*iter)->outputAsPython(output, prefix); | 
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|  | 308 | } | 
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| [9e4655] | 309 | output << "# =========================== Stored Session END ===========================" << std::endl; | 
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| [477012] | 310 | } | 
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|  | 311 |  | 
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| [a6ceab] | 312 | const ActionTrait& ActionQueue::getActionsTrait(const std::string &name) const | 
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| [690741] | 313 | { | 
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|  | 314 | // this const_cast is just required as long as we have a non-const getActionByName | 
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| [10aee4] | 315 | const Action & action = const_cast<ActionQueue *>(this)->getActionByName(name); | 
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|  | 316 | return action.Traits; | 
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| [690741] | 317 | } | 
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|  | 318 |  | 
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| [6367dd] | 319 | void ActionQueue::addElement(Action* _Action,ActionState::ptr _state) | 
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|  | 320 | { | 
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|  | 321 | history->addElement(_Action, _state); | 
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|  | 322 | } | 
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|  | 323 |  | 
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|  | 324 | void ActionQueue::clear() | 
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|  | 325 | { | 
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|  | 326 | history->clear(); | 
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|  | 327 | } | 
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|  | 328 |  | 
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| [601ef8] | 329 | void ActionQueue::clearQueue(const size_t _fromAction) | 
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| [7f1a1a] | 330 | { | 
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| [601ef8] | 331 | #ifdef HAVE_ACTION_THREAD | 
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|  | 332 | mtx_queue.lock(); | 
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|  | 333 | #endif | 
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|  | 334 | LOG(1, "Removing all Actions from position " << _fromAction << " onward."); | 
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|  | 335 | // free all actions still to be called contained in actionqueue | 
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|  | 336 | ActionQueue_t::iterator inititer = actionqueue.begin(); | 
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|  | 337 | std::advance(inititer, _fromAction); | 
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|  | 338 | for (ActionQueue_t::iterator iter = inititer; iter != actionqueue.end(); ++iter) | 
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| [7f1a1a] | 339 | delete *iter; | 
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| [601ef8] | 340 | actionqueue.erase(inititer, actionqueue.end()); | 
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|  | 341 | LOG(1, "There are " << actionqueue.size() << " remaining Actions."); | 
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|  | 342 | #ifdef HAVE_ACTION_THREAD | 
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|  | 343 | CurrentAction = actionqueue.size(); | 
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|  | 344 | mtx_queue.unlock(); | 
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|  | 345 | #endif | 
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|  | 346 | } | 
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|  | 347 |  | 
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|  | 348 | #ifdef HAVE_ACTION_THREAD | 
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|  | 349 | void ActionQueue::clearTempQueue() | 
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|  | 350 | { | 
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| [7f1a1a] | 351 | // free all actions contained in tempqueue | 
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|  | 352 | for (ActionQueue_t::iterator iter = tempqueue.begin(); | 
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|  | 353 | !tempqueue.empty(); iter = tempqueue.begin()) { | 
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|  | 354 | delete *iter; | 
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|  | 355 | tempqueue.erase(iter); | 
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|  | 356 | } | 
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| [601ef8] | 357 | } | 
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|  | 358 |  | 
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|  | 359 | void ActionQueue::setRunThreadIdle(const bool _flag) | 
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|  | 360 | { | 
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| [06b5df] | 361 | { | 
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|  | 362 | boost::unique_lock<boost::mutex> lock(mtx_idle); | 
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| [601ef8] | 363 | run_thread_isIdle = _flag; | 
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| [06b5df] | 364 | } | 
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| [7f1a1a] | 365 | } | 
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| [601ef8] | 366 | #endif | 
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| [6367dd] | 367 |  | 
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| [690741] | 368 | const ActionQueue::ActionTokens_t ActionQueue::getListOfActions() const | 
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|  | 369 | { | 
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|  | 370 | ActionTokens_t returnlist; | 
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|  | 371 |  | 
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|  | 372 | returnlist.insert( | 
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|  | 373 | returnlist.end(), | 
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| [ed3944] | 374 | MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getBeginIter()), | 
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|  | 375 | MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getEndIter())); | 
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| [690741] | 376 |  | 
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|  | 377 | return returnlist; | 
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|  | 378 | } | 
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|  | 379 |  | 
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| [6367dd] | 380 | void ActionQueue::undoLast() | 
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|  | 381 | { | 
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|  | 382 | history->undoLast(); | 
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|  | 383 | } | 
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|  | 384 |  | 
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| [c01fec] | 385 | bool ActionQueue::canUndo() const | 
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|  | 386 | { | 
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|  | 387 | return history->hasUndo(); | 
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|  | 388 | } | 
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|  | 389 |  | 
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| [6367dd] | 390 | void ActionQueue::redoLast() | 
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|  | 391 | { | 
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|  | 392 | history->redoLast(); | 
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|  | 393 | } | 
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|  | 394 |  | 
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| [c01fec] | 395 | bool ActionQueue::canRedo() const | 
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|  | 396 | { | 
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|  | 397 | return history->hasRedo(); | 
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|  | 398 | } | 
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|  | 399 |  | 
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| [f3db60] | 400 | bool ActionQueue::isDryRun(const Action *_nextaction) const | 
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|  | 401 | { | 
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|  | 402 | bool status = dryrun_flag; | 
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|  | 403 | status &= (_nextaction->getName() != "no-dry-run"); | 
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|  | 404 | return status; | 
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|  | 405 | } | 
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| [6367dd] | 406 |  | 
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| [628577] | 407 | CONSTRUCT_SINGLETON(ActionQueue) | 
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