| [628577] | 1 | /* | 
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|  | 2 | * Project: MoleCuilder | 
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|  | 3 | * Description: creates and alters molecular systems | 
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|  | 4 | * Copyright (C)  2013 Frederik Heber. All rights reserved. | 
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|  | 5 | * | 
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|  | 6 | * | 
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|  | 7 | *   This file is part of MoleCuilder. | 
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|  | 8 | * | 
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|  | 9 | *    MoleCuilder is free software: you can redistribute it and/or modify | 
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|  | 10 | *    it under the terms of the GNU General Public License as published by | 
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|  | 11 | *    the Free Software Foundation, either version 2 of the License, or | 
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|  | 12 | *    (at your option) any later version. | 
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|  | 13 | * | 
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|  | 14 | *    MoleCuilder is distributed in the hope that it will be useful, | 
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|  | 15 | *    but WITHOUT ANY WARRANTY; without even the implied warranty of | 
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|  | 16 | *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
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|  | 17 | *    GNU General Public License for more details. | 
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|  | 18 | * | 
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|  | 19 | *    You should have received a copy of the GNU General Public License | 
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|  | 20 | *    along with MoleCuilder.  If not, see <http://www.gnu.org/licenses/>. | 
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|  | 21 | */ | 
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|  | 22 |  | 
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|  | 23 | /* | 
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|  | 24 | * ActionQueue.cpp | 
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|  | 25 | * | 
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|  | 26 | *  Created on: Aug 16, 2013 | 
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|  | 27 | *      Author: heber | 
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|  | 28 | */ | 
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|  | 29 |  | 
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|  | 30 | // include config.h | 
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|  | 31 | #ifdef HAVE_CONFIG_H | 
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|  | 32 | #include <config.h> | 
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|  | 33 | #endif | 
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|  | 34 |  | 
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|  | 35 | #include "CodePatterns/MemDebug.hpp" | 
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|  | 36 |  | 
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| [1d3563] | 37 | #include "Actions/ActionQueue.hpp" | 
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| [628577] | 38 |  | 
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| [690741] | 39 | #include "CodePatterns/Assert.hpp" | 
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|  | 40 | #include "CodePatterns/IteratorAdaptors.hpp" | 
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| [46b181] | 41 | #include "CodePatterns/Log.hpp" | 
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| [628577] | 42 | #include "CodePatterns/Singleton_impl.hpp" | 
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|  | 43 |  | 
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| [415ddd] | 44 | #include <boost/date_time/posix_time/posix_time.hpp> | 
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|  | 45 | #include <boost/version.hpp> | 
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| [46b181] | 46 | #include <string> | 
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|  | 47 | #include <sstream> | 
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| [690741] | 48 | #include <vector> | 
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|  | 49 |  | 
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| [0d4168] | 50 | #include "Actions/ActionExceptions.hpp" | 
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| [6367dd] | 51 | #include "Actions/ActionHistory.hpp" | 
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| [ed3944] | 52 | #include "Actions/ActionRegistry.hpp" | 
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| [0d4168] | 53 | #include "World.hpp" | 
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| [ed3944] | 54 |  | 
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| [628577] | 55 | using namespace MoleCuilder; | 
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|  | 56 |  | 
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| [ed3944] | 57 | ActionQueue::ActionQueue() : | 
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| [6367dd] | 58 | AR(new ActionRegistry()), | 
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| [af5384] | 59 | history(new ActionHistory), | 
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| [74459a] | 60 | #ifndef HAVE_ACTION_THREAD | 
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|  | 61 | CurrentAction(0) | 
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|  | 62 | #else | 
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| [415ddd] | 63 | CurrentAction(0), | 
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|  | 64 | run_thread(boost::bind(&ActionQueue::run, this)), | 
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|  | 65 | run_thread_isIdle(true) | 
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| [74459a] | 66 | #endif | 
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| [628577] | 67 | {} | 
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|  | 68 |  | 
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|  | 69 | ActionQueue::~ActionQueue() | 
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| [ed3944] | 70 | { | 
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| [74459a] | 71 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 72 | stop(); | 
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| [74459a] | 73 | #endif | 
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| [415ddd] | 74 |  | 
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| [7fc447] | 75 | // free all actions contained in actionqueue | 
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|  | 76 | for (ActionQueue_t::iterator iter = actionqueue.begin(); !actionqueue.empty(); iter = actionqueue.begin()) { | 
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| [af5384] | 77 | delete *iter; | 
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| [7fc447] | 78 | actionqueue.erase(iter); | 
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| [af5384] | 79 | } | 
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|  | 80 |  | 
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| [6367dd] | 81 | delete history; | 
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| [ed3944] | 82 | delete AR; | 
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|  | 83 | } | 
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| [628577] | 84 |  | 
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| [f54cda] | 85 | void ActionQueue::queueAction(const std::string &name, enum Action::QueryOptions state) | 
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| [05c989] | 86 | { | 
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| [af5384] | 87 | queueAction(AR->getActionByName(name), state); | 
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| [f54cda] | 88 | } | 
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|  | 89 |  | 
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|  | 90 | void ActionQueue::queueAction(Action *_action, enum Action::QueryOptions state) | 
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|  | 91 | { | 
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| [af5384] | 92 | Action *newaction = _action->clone(state); | 
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|  | 93 | newaction->prepare(state); | 
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| [74459a] | 94 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 95 | mtx_queue.lock(); | 
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| [74459a] | 96 | #endif | 
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| [7fc447] | 97 | actionqueue.push_back( newaction ); | 
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| [74459a] | 98 | #ifndef HAVE_ACTION_THREAD | 
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|  | 99 | try { | 
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|  | 100 | newaction->call(); | 
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|  | 101 | } catch(ActionFailureException &e) { | 
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|  | 102 | std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl; | 
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|  | 103 | World::getInstance().setExitFlag(5); | 
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|  | 104 | } | 
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|  | 105 | #else | 
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| [415ddd] | 106 | { | 
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|  | 107 | boost::lock_guard<boost::mutex> lock(mtx_idle); | 
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|  | 108 | run_thread_isIdle = (CurrentAction == actionqueue.size()); | 
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| [0d4168] | 109 | } | 
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| [415ddd] | 110 | mtx_queue.unlock(); | 
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| [74459a] | 111 | #endif | 
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| [05c989] | 112 | } | 
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|  | 113 |  | 
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| [975b83] | 114 | void ActionQueue::insertAction(Action *_action, enum Action::QueryOptions state) | 
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|  | 115 | { | 
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| [74459a] | 116 | #ifndef HAVE_ACTION_THREAD | 
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|  | 117 | queueAction(_action, state); | 
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|  | 118 | #else | 
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| [415ddd] | 119 | Action *newaction = _action->clone(state); | 
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|  | 120 | newaction->prepare(state); | 
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|  | 121 | mtx_queue.lock(); | 
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|  | 122 | tempqueue.push_back( newaction ); | 
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|  | 123 | { | 
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|  | 124 | boost::lock_guard<boost::mutex> lock(mtx_idle); | 
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|  | 125 | run_thread_isIdle = !((CurrentAction != actionqueue.size()) || !tempqueue.empty()); | 
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|  | 126 | } | 
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|  | 127 | mtx_queue.unlock(); | 
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| [74459a] | 128 | #endif | 
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| [415ddd] | 129 | } | 
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|  | 130 |  | 
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| [74459a] | 131 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 132 | void ActionQueue::run() | 
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|  | 133 | { | 
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|  | 134 | bool Interrupted = false; | 
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|  | 135 | do { | 
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|  | 136 | // sleep for some time and wait for queue to fill up again | 
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|  | 137 | try { | 
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|  | 138 | #if BOOST_VERSION < 105000 | 
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|  | 139 | run_thread.sleep(boost::get_system_time() + boost::posix_time::milliseconds(100)); | 
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|  | 140 | #else | 
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|  | 141 | run_thread.sleep_for(100); | 
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|  | 142 | #endif | 
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|  | 143 | } catch(boost::thread_interrupted &e) { | 
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|  | 144 | LOG(2, "INFO: ActionQueue has received stop signal."); | 
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|  | 145 | Interrupted = true; | 
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|  | 146 | } | 
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|  | 147 | //    LOG(1, "DEBUG: Start of ActionQueue's run() loop."); | 
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|  | 148 | // call all currently present Actions | 
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|  | 149 | mtx_queue.lock(); | 
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|  | 150 | insertTempQueue(); | 
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|  | 151 | bool status = (CurrentAction != actionqueue.size()); | 
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|  | 152 | mtx_queue.unlock(); | 
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|  | 153 | while (status) { | 
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|  | 154 | //      boost::this_thread::disable_interruption di; | 
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|  | 155 | LOG(0, "Calling Action " << actionqueue[CurrentAction]->getName() << " ... "); | 
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|  | 156 | try { | 
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|  | 157 | actionqueue[CurrentAction]->call(); | 
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|  | 158 | } catch(ActionFailureException &e) { | 
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|  | 159 | std::cerr << "Action " << *boost::get_error_info<ActionNameString>(e) << " has failed." << std::endl; | 
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|  | 160 | World::getInstance().setExitFlag(5); | 
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|  | 161 | } | 
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|  | 162 | // access actionqueue, hence using mutex | 
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|  | 163 | mtx_queue.lock(); | 
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|  | 164 | // step on to next action and check for end | 
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|  | 165 | CurrentAction++; | 
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|  | 166 | // insert new actions (before [CurrentAction]) if they have been spawned | 
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|  | 167 | // we must have an extra vector for this, as we cannot change actionqueue | 
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|  | 168 | // while an action instance is "in-use" | 
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|  | 169 | insertTempQueue(); | 
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|  | 170 | status = (CurrentAction != actionqueue.size()); | 
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|  | 171 | mtx_queue.unlock(); | 
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|  | 172 | } | 
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|  | 173 | { | 
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|  | 174 | boost::lock_guard<boost::mutex> lock(mtx_idle); | 
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|  | 175 | run_thread_isIdle = !((CurrentAction != actionqueue.size()) || !tempqueue.empty()); | 
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|  | 176 | } | 
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|  | 177 | cond_idle.notify_one(); | 
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|  | 178 | //    LOG(1, "DEBUG: End of ActionQueue's run() loop."); | 
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|  | 179 | } while (!Interrupted); | 
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|  | 180 | } | 
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| [74459a] | 181 | #endif | 
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| [415ddd] | 182 |  | 
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|  | 183 | void ActionQueue::insertTempQueue() | 
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|  | 184 | { | 
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|  | 185 | if (!tempqueue.empty()) { | 
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|  | 186 | ActionQueue_t::iterator InsertionIter = actionqueue.begin(); | 
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|  | 187 | std::advance(InsertionIter, CurrentAction); | 
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|  | 188 | actionqueue.insert( InsertionIter, tempqueue.begin(), tempqueue.end() ); | 
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|  | 189 | tempqueue.clear(); | 
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|  | 190 | } | 
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|  | 191 | } | 
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|  | 192 |  | 
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| [74459a] | 193 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 194 | void ActionQueue::wait() | 
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|  | 195 | { | 
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|  | 196 | boost::unique_lock<boost::mutex> lock(mtx_idle); | 
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|  | 197 | while(!run_thread_isIdle) | 
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|  | 198 | { | 
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|  | 199 | cond_idle.wait(lock); | 
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|  | 200 | } | 
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|  | 201 | } | 
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| [74459a] | 202 | #endif | 
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| [415ddd] | 203 |  | 
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| [74459a] | 204 | #ifdef HAVE_ACTION_THREAD | 
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| [415ddd] | 205 | void ActionQueue::stop() | 
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|  | 206 | { | 
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|  | 207 | // notify actionqueue thread that we wish to terminate | 
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|  | 208 | run_thread.interrupt(); | 
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|  | 209 | // wait till it ends | 
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|  | 210 | run_thread.join(); | 
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| [975b83] | 211 | } | 
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| [74459a] | 212 | #endif | 
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| [975b83] | 213 |  | 
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| [a6ceab] | 214 | Action* ActionQueue::getActionByName(const std::string &name) | 
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| [1d3563] | 215 | { | 
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| [ed3944] | 216 | return AR->getActionByName(name); | 
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| [1d3563] | 217 | } | 
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|  | 218 |  | 
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| [a6ceab] | 219 | bool ActionQueue::isActionKnownByName(const std::string &name) const | 
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| [1d3563] | 220 | { | 
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| [ed3944] | 221 | return AR->isActionPresentByName(name); | 
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| [1d3563] | 222 | } | 
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|  | 223 |  | 
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| [126867] | 224 | void ActionQueue::registerAction(Action *_action) | 
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|  | 225 | { | 
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|  | 226 | AR->registerInstance(_action); | 
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|  | 227 | } | 
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|  | 228 |  | 
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| [46b181] | 229 | void ActionQueue::outputAsCLI(std::ostream &output) const | 
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|  | 230 | { | 
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| [7fc447] | 231 | for (ActionQueue_t::const_iterator iter = actionqueue.begin(); | 
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|  | 232 | iter != actionqueue.end(); | 
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| [46b181] | 233 | ++iter) { | 
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| [bad589] | 234 | // skip store-session in printed list | 
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| [12d946] | 235 | if ( ((*iter)->getName() != std::string("store-session")) | 
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|  | 236 | && ((*iter)->getName() != std::string("load-session"))) { | 
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| [7fc447] | 237 | if (iter != actionqueue.begin()) | 
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| [bad589] | 238 | output << " "; | 
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|  | 239 | (*iter)->outputAsCLI(output); | 
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|  | 240 | } | 
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| [46b181] | 241 | } | 
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|  | 242 | output << std::endl; | 
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|  | 243 | } | 
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|  | 244 |  | 
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| [477012] | 245 | void ActionQueue::outputAsPython(std::ostream &output) const | 
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|  | 246 | { | 
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|  | 247 | const std::string prefix("pyMoleCuilder"); | 
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|  | 248 | output << "import " << prefix << std::endl; | 
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| [9e4655] | 249 | output << "# ========================== Stored Session BEGIN ==========================" << std::endl; | 
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| [7fc447] | 250 | for (ActionQueue_t::const_iterator iter = actionqueue.begin(); | 
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|  | 251 | iter != actionqueue.end(); | 
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| [477012] | 252 | ++iter) { | 
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|  | 253 | // skip store-session in printed list | 
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| [12d946] | 254 | if ( ((*iter)->getName() != std::string("store-session")) | 
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|  | 255 | && ((*iter)->getName() != std::string("load-session"))) | 
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| [477012] | 256 | (*iter)->outputAsPython(output, prefix); | 
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|  | 257 | } | 
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| [9e4655] | 258 | output << "# =========================== Stored Session END ===========================" << std::endl; | 
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| [477012] | 259 | } | 
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|  | 260 |  | 
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| [a6ceab] | 261 | const ActionTrait& ActionQueue::getActionsTrait(const std::string &name) const | 
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| [690741] | 262 | { | 
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|  | 263 | // this const_cast is just required as long as we have a non-const getActionByName | 
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|  | 264 | const Action * const action = const_cast<ActionQueue *>(this)->getActionByName(name); | 
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|  | 265 | return action->Traits; | 
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|  | 266 | } | 
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|  | 267 |  | 
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| [6367dd] | 268 | void ActionQueue::addElement(Action* _Action,ActionState::ptr _state) | 
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|  | 269 | { | 
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|  | 270 | history->addElement(_Action, _state); | 
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|  | 271 | } | 
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|  | 272 |  | 
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|  | 273 | void ActionQueue::clear() | 
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|  | 274 | { | 
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|  | 275 | history->clear(); | 
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|  | 276 | } | 
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|  | 277 |  | 
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|  | 278 |  | 
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| [690741] | 279 | const ActionQueue::ActionTokens_t ActionQueue::getListOfActions() const | 
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|  | 280 | { | 
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|  | 281 | ActionTokens_t returnlist; | 
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|  | 282 |  | 
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|  | 283 | returnlist.insert( | 
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|  | 284 | returnlist.end(), | 
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| [ed3944] | 285 | MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getBeginIter()), | 
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|  | 286 | MapKeyConstIterator<ActionRegistry::const_iterator>(AR->getEndIter())); | 
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| [690741] | 287 |  | 
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|  | 288 | return returnlist; | 
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|  | 289 | } | 
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|  | 290 |  | 
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| [6367dd] | 291 | void ActionQueue::undoLast() | 
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|  | 292 | { | 
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|  | 293 | history->undoLast(); | 
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|  | 294 | } | 
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|  | 295 |  | 
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|  | 296 | void ActionQueue::redoLast() | 
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|  | 297 | { | 
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|  | 298 | history->redoLast(); | 
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|  | 299 | } | 
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|  | 300 |  | 
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|  | 301 |  | 
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| [628577] | 302 | CONSTRUCT_SINGLETON(ActionQueue) | 
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