[0b990d] | 1 | //
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| 2 | // wfn.h
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| 3 | //
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| 4 | // Copyright (C) 1996 Limit Point Systems, Inc.
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| 5 | //
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| 6 | // Author: Curtis Janssen <cljanss@limitpt.com>
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| 7 | // Maintainer: LPS
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| 8 | //
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| 9 | // This file is part of the SC Toolkit.
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| 10 | //
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| 11 | // The SC Toolkit is free software; you can redistribute it and/or modify
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| 12 | // it under the terms of the GNU Library General Public License as published by
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| 13 | // the Free Software Foundation; either version 2, or (at your option)
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| 14 | // any later version.
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| 15 | //
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| 16 | // The SC Toolkit is distributed in the hope that it will be useful,
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| 17 | // but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 18 | // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 19 | // GNU Library General Public License for more details.
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| 20 | //
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| 21 | // You should have received a copy of the GNU Library General Public License
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| 22 | // along with the SC Toolkit; see the file COPYING.LIB. If not, write to
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| 23 | // the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.
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| 24 | //
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| 25 | // The U.S. Government is granted a limited license as per AL 91-7.
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| 26 | //
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| 27 |
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| 28 | #ifndef _chemistry_qc_wfn_wfn_h
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| 29 | #define _chemistry_qc_wfn_wfn_h
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| 30 |
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| 31 | #ifdef __GNUC__
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| 32 | #pragma interface
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| 33 | #endif
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| 34 |
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| 35 | #include <iostream>
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| 36 |
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| 37 | #include <util/misc/compute.h>
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| 38 | #include <math/scmat/matrix.h>
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| 39 | #include <math/scmat/vector3.h>
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| 40 | #include <chemistry/molecule/energy.h>
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| 41 | #include <chemistry/qc/basis/basis.h>
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| 42 | #include <chemistry/qc/basis/integral.h>
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| 43 | #include <chemistry/qc/basis/orthog.h>
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| 44 |
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| 45 | namespace sc {
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| 46 |
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| 47 | /** A Wavefunction is a MolecularEnergy that utilizies a GaussianBasisSet. */
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| 48 | class Wavefunction: public MolecularEnergy {
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| 49 |
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| 50 | RefSCDimension aodim_;
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| 51 | RefSCDimension sodim_;
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| 52 | Ref<SCMatrixKit> basiskit_;
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| 53 |
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| 54 | ResultRefSymmSCMatrix overlap_;
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| 55 | ResultRefSymmSCMatrix hcore_;
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| 56 | ResultRefSCMatrix natural_orbitals_;
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| 57 | ResultRefDiagSCMatrix natural_density_;
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| 58 |
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| 59 | double * bs_values;
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| 60 | double * bsg_values;
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| 61 |
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| 62 | Ref<GaussianBasisSet> gbs_;
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| 63 | Ref<Integral> integral_;
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| 64 |
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| 65 | Ref<GaussianBasisSet> atom_basis_;
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| 66 | double * atom_basis_coef_;
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| 67 |
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| 68 | double lindep_tol_;
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| 69 | OverlapOrthog::OrthogMethod orthog_method_;
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| 70 | Ref<OverlapOrthog> orthog_;
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| 71 |
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| 72 | int print_nao_;
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| 73 | int print_npa_;
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| 74 |
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| 75 | void init_orthog();
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| 76 |
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| 77 | void set_up_charge_types(std::vector<int> &q_pc,
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| 78 | std::vector<int> &q_cd,
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| 79 | std::vector<int> &n_pc,
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| 80 | std::vector<int> &n_cd);
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| 81 |
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| 82 | double nuc_rep_pc_pc(const std::vector<int>&,const std::vector<int>&,bool);
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| 83 | double nuc_rep_pc_cd(const std::vector<int>&,const std::vector<int>&);
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| 84 | double nuc_rep_cd_cd(const std::vector<int>&,const std::vector<int>&,bool);
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| 85 | void scale_atom_basis_coef();
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| 86 |
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| 87 | void nuc_rep_grad_pc_pc(double **grad,
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| 88 | const std::vector<int>&c1,
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| 89 | const std::vector<int>&c2,
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| 90 | bool uniq);
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| 91 | void nuc_rep_grad_pc_cd(double **grad,
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| 92 | const std::vector<int>&c1,
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| 93 | const std::vector<int>&c2);
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| 94 | void nuc_rep_grad_cd_cd(double **grad,
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| 95 | const std::vector<int>&c1,
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| 96 | const std::vector<int>&c2,
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| 97 | bool uniq);
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| 98 |
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| 99 | protected:
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| 100 |
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| 101 | int debug_;
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| 102 |
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| 103 | double min_orthog_res();
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| 104 | double max_orthog_res();
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| 105 |
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| 106 | void copy_orthog_info(const Ref<Wavefunction> &);
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| 107 |
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| 108 | public:
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| 109 | Wavefunction(StateIn&);
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| 110 | /** The KeyVal constructor.
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| 111 |
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| 112 | <dl>
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| 113 |
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| 114 | <dt><tt>basis</tt><dd> Specifies a GaussianBasisSet object. There
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| 115 | is no default.
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| 116 |
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| 117 | <dt><tt>integral</tt><dd> Specifies an Integral object that
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| 118 | computes the two electron integrals. The default is a IntegralV3
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| 119 | object.
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| 120 |
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| 121 | <dt><tt>orthog_method</tt><dd> This is a string that specifies the
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| 122 | orthogonalization method to be used. It can be one one canonical,
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| 123 | gramschmidt, or symmetric. The default is symmetric.
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| 124 |
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| 125 | <dt><tt>lindep_tol</tt><dd> The tolerance used to detect linearly
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| 126 | dependent basis functions. The precise meaning depends on the
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| 127 | orthogonalization method. The default value is 1e-8.
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| 128 |
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| 129 | <dt><tt>print_nao</tt><dd> This specifies a boolean value. If true
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| 130 | the natural atomic orbitals will be printed. Not all wavefunction
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| 131 | will be able to do this. The default is false.
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| 132 |
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| 133 | <dt><tt>print_npa</tt><dd> This specifies a boolean value. If true
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| 134 | the natural population analysis will be printed. Not all
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| 135 | wavefunction will be able to do this. The default is true if
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| 136 | print_nao is true, otherwise it is false.
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| 137 |
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| 138 | <dt><tt>debug</tt><dd> This integer can be used to produce output
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| 139 | for debugging. The default is 0.
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| 140 |
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| 141 | </dl> */
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| 142 | Wavefunction(const Ref<KeyVal>&);
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| 143 | virtual ~Wavefunction();
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| 144 |
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| 145 | void save_data_state(StateOut&);
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| 146 |
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| 147 | double density(const SCVector3&);
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| 148 | double density_gradient(const SCVector3&,double*);
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| 149 | double natural_orbital(const SCVector3& r, int iorb);
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| 150 | double natural_orbital_density(const SCVector3& r,
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| 151 | int orb, double* orbval = 0);
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| 152 | double orbital(const SCVector3& r, int iorb, const RefSCMatrix& orbs);
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| 153 |
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| 154 | double orbital_density(const SCVector3& r,
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| 155 | int iorb,
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| 156 | const RefSCMatrix& orbs,
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| 157 | double* orbval = 0);
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| 158 |
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| 159 | /// Returns the charge.
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| 160 | double charge();
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| 161 | /// Returns the number of electrons.
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| 162 | virtual int nelectron() = 0;
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| 163 |
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| 164 | /// Returns the SO density.
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| 165 | virtual RefSymmSCMatrix density() = 0;
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| 166 | /// Returns the AO density.
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| 167 | virtual RefSymmSCMatrix ao_density();
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| 168 | /// Returns the natural orbitals.
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| 169 | virtual RefSCMatrix natural_orbitals();
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| 170 | /// Returns the natural density (a diagonal matrix).
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| 171 | virtual RefDiagSCMatrix natural_density();
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| 172 |
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| 173 | /// Return 1 if the alpha density is not equal to the beta density.
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| 174 | virtual int spin_polarized() = 0;
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| 175 |
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| 176 | /// Return alpha electron densities in the SO basis.
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| 177 | virtual RefSymmSCMatrix alpha_density();
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| 178 | /// Return beta electron densities in the SO basis.
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| 179 | virtual RefSymmSCMatrix beta_density();
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| 180 | /// Return alpha electron densities in the AO basis.
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| 181 | virtual RefSymmSCMatrix alpha_ao_density();
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| 182 | /// Return beta electron densities in the AO basis.
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| 183 | virtual RefSymmSCMatrix beta_ao_density();
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| 184 |
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| 185 | /// returns the ao to nao transformation matrix
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| 186 | virtual RefSCMatrix nao(double *atom_charges=0);
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| 187 |
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| 188 | /// Returns the SO overlap matrix.
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| 189 | virtual RefSymmSCMatrix overlap();
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| 190 | /// Returns the SO core Hamiltonian.
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| 191 | virtual RefSymmSCMatrix core_hamiltonian();
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| 192 |
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| 193 | /** Returns the nuclear repulsion energy. This must be used instead of
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| 194 | Molecule::nuclear_repulsion_energy() since there may be diffuse
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| 195 | atomic charges. */
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| 196 | virtual double nuclear_repulsion_energy();
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| 197 | /** Computes the nuclear repulsion gradient. This must be used instead
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| 198 | of Molecule::nuclear_repulsion_1der() since there may be diffuse
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| 199 | atomic charges. The gradient, g, is zeroed and set to x_0, y_0,
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| 200 | z_0, x_1, ... . */
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| 201 | void nuclear_repulsion_energy_gradient(double *g);
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| 202 | /** Computes the nuclear repulsion gradient. This must be used instead
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| 203 | of Molecule::nuclear_repulsion_1der() since there may be diffuse
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| 204 | atomic charges. The gradient, g, is first zeroed. Its dimensions
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| 205 | are g[natom][3]. */
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| 206 | virtual void nuclear_repulsion_energy_gradient(double **g);
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| 207 |
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| 208 | /// Atomic orbital dimension.
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| 209 | RefSCDimension ao_dimension();
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| 210 | /// Symmetry adapted orbital dimension.
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| 211 | RefSCDimension so_dimension();
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| 212 | /// Orthogonalized symmetry adapted orbital dimension.
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| 213 | RefSCDimension oso_dimension();
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| 214 | /// Matrix kit for AO, SO, orthogonalized SO, and MO dimensioned matrices.
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| 215 | Ref<SCMatrixKit> basis_matrixkit();
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| 216 | /// Returns the Molecule.
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| 217 | Ref<Molecule> molecule() const;
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| 218 | /// Returns the basis set.
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| 219 | Ref<GaussianBasisSet> basis() const;
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| 220 | /// Returns the basis set describing the nuclear charge distributions
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| 221 | Ref<GaussianBasisSet> atom_basis() const;
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| 222 | /** Returns the coefficients of the nuclear charge distribution basis
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| 223 | * functions. */
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| 224 | const double *atom_basis_coef() const;
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| 225 | /// Returns the integral evaluator.
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| 226 | Ref<Integral> integral();
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| 227 |
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| 228 | // override symmetry_changed from MolecularEnergy
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| 229 | void symmetry_changed();
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| 230 |
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| 231 | /** Returns a matrix which does the default transform from SO's to
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| 232 | orthogonal SO's. This could be either the symmetric or canonical
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| 233 | orthogonalization matrix. The row dimension is SO and the column
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| 234 | dimension is ortho SO. An operator \f$O\f$ in the ortho SO basis is
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| 235 | given by \f$X O X^T\f$ where \f$X\f$ is the return value of this
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| 236 | function. */
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| 237 | RefSCMatrix so_to_orthog_so();
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| 238 |
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| 239 | /** Returns the inverse of the transformation returned by so_to_orthog_so.
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| 240 | */
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| 241 | RefSCMatrix so_to_orthog_so_inverse();
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| 242 |
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| 243 | /// Returns the orthogonalization method
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| 244 | OverlapOrthog::OrthogMethod orthog_method() const;
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| 245 | /// (Re)Sets the orthogonalization method and makes this obsolete
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| 246 | void set_orthog_method(const OverlapOrthog::OrthogMethod&);
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| 247 |
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| 248 | /// Returns the tolerance for linear dependencies.
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| 249 | double lindep_tol() const;
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| 250 | /// Re(Sets) the tolerance for linear dependencies.
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| 251 | void set_lindep_tol(double);
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| 252 |
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| 253 | void obsolete();
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| 254 |
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| 255 | void print(std::ostream& = ExEnv::out0()) const;
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| 256 | };
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| 257 |
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| 258 | }
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| 259 |
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| 260 | #endif
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| 261 |
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| 262 | // Local Variables:
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| 263 | // mode: c++
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| 264 | // c-file-style: "ETS"
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| 265 | // End:
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